Cp4.1LG09g07310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g07310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	30-kDa cleavage and polyadenylation specificity factor 30-like
Location	Cp4.1LG09: 6703501 .. 6711335 (-)
RNA-Seq Expression	Cp4.1LG09g07310
Synteny	Cp4.1LG09g07310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGTTTAACATCACAAGAGGACCTCCGAAATTGATCTTAAAAAAACTCAAAAATTGATGAATTTAATTTTGATGATGAACAAGTTCAAAAGCAGTGTCAGTTTGAAAGCCCACCTCATATGGTCAGAAAATCCGACGGCAAATTTCTTCTTCACTCTCTGATGCAAAACCCATTTCTGCAACTCCCTTCATTGCTCTTCTGCTTCTTGTTTTGAGCTATGATCTGCTGCACAACCCTAATTCAGTAACGCTTTACCTTTCCTAATGGAGGATTCGGAGGGTGGTCTCAGCTTCGATTTCGAGGGCGGTCTTGATGCCGGTCCCACCAACCCCGCCGCCGCCTCCTTGCCCCTCATCCACTCTGACTCTTCTGCTCCTCCTGCCGCCTCCGCCGTCTCCAACTCTGGCGCCGGTGCCGGCGGTCCTCCTGTTACTGCTGACGCTTCTGGCGCCGCAACTGGCAACGTTGGCAGCCGGAGGAGCTTCCGGCAGACGGTTTGTCGGCATTGGCTCCGCAGCCTGTGTATGAAGGGCGACGCTTGTGGCTTCCTTCACCAGTATGATAAATCTCGGATGCCCATTTGCCGATTCTTCCGTCTCTATGGCGAGTGCCGTGAACAGGATTGCGTGTATAAACATACCAACGAAGATATCAAGGAGTGTAATATGTAAGTTTTGGAATTCGGAATTGAGTTTTAGTCTATTGTTTCTTGGCTGTTCGTTTGATTTATACTTTTTTGTTGTTTAATTTCGTTATACGCTTGTTTTTATGGAAGGCGATCATGTCTGCTCTCATCTGTTATGCCATTTTTCTTTACCCCTAGTTGTTGAATGTGCAGTTCATAGATTGCAGAGTGGATTTTCAGTTTCTTGATTATATGAGAATTCACGAACAGATTCTAATCTAATTTCTCCCATTAGGGGTTTACAAAAGAGTACTGAATTGCAAAGAGAAAACAATGAGATACATTCATGGTGATAGATCATATGGAGTCCTCATTCAAATTTTTACAAAATGATTCCCTGGTTTGACTTAGATTGTTGCATTTGCACGGATTTGTAAGATGATTTCTGCAGTTCATCTTTTTGGACCTATTTTTGTTCTTTGAACAACAATGGATGTTAAACACCTGATGTCTAAACACTGTAACTGCAGGTACAAGTTTGGTTTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCTAAGTTGCCGGGACCTCCACCTCCGGTGGAAGAAATCCTTCAGAAAATTCAGCATTTGGGTCCATACAATTATGGCACCTCGAACAAATTCTTTTCACAACGTGGAGTTGGCTTATCTCAACAGAACGAAAAATCTCAGTTTCCTCCGGGTCCAGCCACCGTTACTCAAGGAGTGATAGGAAAACCTTCTGTAGCAGAATCTGCTAATGTTCAACAACAGCAAGCCCAACAGTCTGCACAACAAACCAGCCAGGCTCCAATACAAACTGCTTCTAATGGTCAGGTCAATCAATTAAACAGAAATTCAACGTCTTTGCCTCCCGGAATATCTAGGTGTGTCTAAGGAGACCTGAAGTCTTTTTACTTCAAAACCTAGTTTTTTTTTTTCGTATCATATGGAATCATTGTTGCAGAGATATGTTATTTAAATTTCAGTATTTTATCATATTTGTGCTGTTGAACAGTTACGTTAATCCCGAGTAGTTAGCAATGTTTTTCTTCATATCAATTTGTAGTCCTTCGACCACAAGAATCTTTAGTTAGATTGAGATTTCAACTCGGTACCTTTGTAGATTTTGAGAAAAATGGCTCCTAGAAAGACATGAATCAACATCGTAGGGTATTAGTTATTTTACATATTCTGTATCAAGCTATTAAATTCTATGCTGAAGCTTCATTATCATACTCTCATGTTCCATTTGAATTAGTATCTCATGTCAATTACCAATAGTCAAGAGAATATTTTTTTTCCCGCACGTTGATGATTCCATAACTGATTGGCTAGAATCTGTTGGCTCATAGCTCATACTCTGTTATATTAGAATCTGATTGAATCTATTTTCTGACACTTCTTGTGGACTTTTATCGATTTAGTTTGCTCCGAATACTTGAAATTGTTGTAGTCTGTCGAGCTTCTTTAGTTATACTACCTTTGTGAGTGATGCCAAGTGGACTTTTTTTCGGTAAAACACAATCAGCAAGGGGTACCCCTTTTTGGTTCTGTAACTTTCTCCATTCATCTTCTGATAAAGACATTCAGCTACCCATTTTCATATAATTTTGCAAAAAAGAAAAGATAAAAAGCTTACTTTTACATGAACCTTATAAATACTCTTTATGTCCTAATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGTGTCAATCTTTCTCTATTATATTTGTGTATGATGTTACTTCGCCATTGAGGACGGAAGTACGTTTGTTTGAGATAACCATACTGATTTAGTATTGGCTGATTAGGGTTGTGCAAAGATGATGACTAGGATTGGTGGATCTGTCAGCGGGGGCAATTGGAAGTATGCACATGGAACTGCGCATTACGGGCAAAACTTTTCACTCAAATGGCTGAAGGTTTATATTTTATTTCTTAGATCTTTTCATAGTTTTATGCAGAAATTTATCACAACAGATCTTTCCATGCTGTTGCATTTTATTAACTTGCATTACTGCTGATGCTTGTGCTCTCTCTGTTTCTCTCTCTCACCCTCTTAAAAGTATGCACATTTACTTTCAAAGATCATCAATGCAGTGCTCATTAAAGTCGAAACTGTAATAATTTTTTAAAAAATTTGTGTTATTGAACATTTTTTTTCTTGCCATCATTCAAAGACGCCTGAGAATGAGGAACACAAAGGTTCAATTGTATGCATAGAAAGACTGAAAGAGGAAGAAAACTTGATCAATTTCTCCATCTAAACCCTAAAACCTTAGAGGTACATCGAATGGAAAAAAGATCGATGCCTCTCATGGGTTTGAGTGCATCGAACTTCATGACTCAGCTTGTTATTCTTATATATATATATTGAAGTAAATTAAATTATTATTGTTATTTCTACCATTTTTTTCCAGTTTCATTGAGAATTTTCTGTTTTTTGAGATGAAAGTTGATGAAAAATTACAATATGCATTTTCTGTGATATCTGGAAGCTAGTTAAATCTGAATTTGACAGATCCATGATAAAGCTCAAAGTTCAAGCTAACTAATGTTGCTAACAATGATTTCGTTGCTGTCAATTTGAATCTTGTATGATGCAATAAATAATTTGACTTTGTTACTTGCAGTTATGTGAACTATCCTTCCAGAAAACTCGCCATTTGAGAAATCCTTATAATGAAAACTTACCAGTAAAGGTATGGTATCTCAAGCTTGATTAAGAACGATTTCTATTTATACTTCTATCTGCGGATGTCTTTGTCACACTTCTCCTTTTATATGTGTTGTGAACTCTTGAAACTATTTCCAGCTTCTTCTATATTTTATTTGTATGATTATTGTCTCGATTTGCTCTATCTGGTGAGACATATAGCTGGTTTTGTTGAAGTCAAGTTGTCTGAAAACATACATAAGAACCTGCAAGCTTGTGAATGAAAATTTATGCTTCTTCTTTTGTGGGGTATATGGAAGCTTTTCGTAGAATTAGTTTCATGGAAGTTACTAGAAATTACACTGCCACTGCGTGATATATATATATAGAGAGATAGATAGATAGATAGATAGATAGATAGATATATACTTATCTAAGTGCTAACATTATCGATACAATCATGAGGGATGGAAAATCCCAATCAACTTTACTCTATNTTTTTTTTTTTTTTTTTTTTCTATAATTCGAGAGAAACACAGTAGGTTCTCATATAATAGCAATAAACTAACATTTGACTATCAGAACCATTGCTAGTAATGCAGGCTTCATTTTCGTGCTAAGATAACCACCATTATTTCCTTGACTGCAATTAAAATGTTGGCCCAAACATGGTAGACTTAAAAAAAAGGTTTAGATCTAACAAAAGCATGAAAGACTTCTAATGGAGTCTTGAACATGTATAGTGATCCATCTAGGAAGCAGAACAGCGGTCACATTTCTAAGCTGAGACATTGAATTCCAGATTTGTCACATCCGGGTAAAGTTGTGGATGACATTTGAATAACTGACTCTCATATCTCCCTTTCTTGCACAATGCTTGAATACCTTTTCAAGTAGTTGAATGTTCGAATTTTGAGAAAAGCTTAATGATGATGATTGGAAGAATGTAAAGAGCTTAGTATGTTAATTTTGGATGGCTTTCGTTTTCCTTTTCAAATGGATAGGATAAGAGATTATGTAAAGGAGGTTCTCGTTAACCATGGAATTGTGTGGAGCCGGGCTTTATGAAAATTTTATAACCTACGTAAGCTATAAGTTATTTTCCTGGTCAGTCTTCCTAGGTATCAGTAGCACTACCGAGAAGAAACTTCTTAAGGCCTTGGTCTTCAACATACTTCGGGTTTATTACTGAAGCAGTTTCCTCAAAGCCCTCTTCGAGAACATTACCTCAACTCCTCTTTGGTATTGATGAAAGTTCTTTACAGATATACTAAAGGTAACCGCCCAAGCTGGCTAGCAGATATTGTCCTCTTTGGGCTTTCCACTTCAGGCTTCTCTTCAAGGTTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACACCCTTATAAAAAATGTTTTGTTCTCCTCCCCAACCGATGTGGGATCTAACAATCCATTCCCCTTCGGGGCCCAGCGTCGTCGTTGGCACTCATTCTCTTCTCCAATCGATGTGGGACCTCCCAATCCACCCCCCTCCGGGGCCTAGCCTCCTCGTTAGCATATCGCCCGATATCTGACTCTGATACTATTTGTAACAGTCCAAGTCCACCGCTAGCAAACATTGCCCCCTTTGGATTTTTCCTTTCAGGTTTCCCTTCAAGGTTTTTAAAACGCGTCTGTTGGGGAGAGGTTTCCACACCATCGTAAAGAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTAACACTAAGTTTGTCTGCTAGTCCCTTCAAAGCTAGGACAAGTACATTTCAAGAGTTTATGGGTGATAGTGCTCCAAGTTGTTTGCTAGAATAGTCAGCCTTATCATTTTATTAATAATATTTTTGAAAAATGAACATTGTAGACTAATAAATAGAGTGGGGACAGATTAAAAATTCCCTATGGAGCTGTAAATAAGAACTGCTCACCCTAGTTTATCTTGATGCCATCCCTACTCATTGCAATATGTTTCTTACTTGTTCGGGTTGGGTGGGAGTCTGCATACTAAAGTTAGATCCATGATGTAAGAAATAGAAAAGAAACATATGCTATATATTGCAAATGAAAAATAGGAATCCATGGTGAGATAGAATGAAATTTATAACTGGGCATAACTAAGCTTGTAGAAAAATTACTTTGATCCTATGTACTCTCACGAGTTAATAAATGGAAATGGAAATGGAAAATATTTAGTCAAAGGTATTCCAGAAGATTTCCCCTTTCCAAAACGCAACAAAAAGGCTTGCATCTTCACAGATAAGAGTCACAATGTAAATTATTTTCATGTGTTTTAGCTATTACTTGAAGCAAATTGTCCCCTCCCTTTTGTAACTACAGTTCATCTACCCTCGCTAGTCCGTGAAGAATGTTTCGGTACCTATTCAAATTGCTTGCTTGACTGATTTTCATCTAATACGAACTTCACGTGTGTTTCATTTCATCATATCAATGAATGGTTTCTGTTTCCTTGAAGGAAAAAAAAAAAAACAACAAAAAGGCTGTAATGAAAAACTTTAAAAAGGTGATCAAGGAAATCATCTGATAGTAGTTAGATTGAGACGAAACAAGATGATTTTCTGAAACATTGATGATGATGCTGGTTGTGTATCAGATGGGATTTTGCTTTGATGGCTTCACTTTGCTTCAACTTTGAAGGAGTTCAAAGCCATCCCGATTATCGTTTAATCCGTTCAATTGATGCTCATTTTGCTTTAAACTGCTCATTGTCTTGGTTTGCTTCCGTCAACCATCCACATGTCCATAGAGGATGATTGTTGAAAAAGTTAACCTTTTCCTCCATATCCTGTTCTGCAATCAGAGGAAGCATTAGATACTAATTGAGCCATCATTCTTCTTTTTGTAGATTAGTAGAGATTGCCAAGAGCTAGAACCTTCTATTGGTGAGCAGCTGGCTTCTTTGCTTTATCTTGAGCCCGATGGTGACCTCATGGTATGCTTGCTTTGTTCATTTTGAACGAAGAATCTGAAATCTTTGAAATATGTTCATAATGAAGTTTGAGGGAGTGGATTATGGCAGTTTCAGGATTTATTATTGTGTAATTGTTTGGGATAGCTTTAGCGAATTTCGTAAGTGTGTTTTTCTTATTTTTATGATCAGGCTGTCTCGATAGCAGCGGAATCAAAACGAGAAGAGGAGAAAGCAAAGGGAGTTAATCCTGATATCAGAAATGAGAATCCAGATATCGTCCCGTTTGAGGATAACGAAGAAGAGGAAGAAGAAGAAAGCGAAGAGGAGGAGGAGGAGAGCTTTGGCCAGTCCGTTGGTCCACCAGCTCAGGGCAGAGGAAGGGGCCGGGGAATGATGTGGCCTCCACACATGCCGATGGGGCGTGGTGCGAGGCCTTTCCATGGAATGCAAGGTTTTCCACCTGGGATGATGGGTCCAGATGGGATGTCATATGGACCTGTTACACCTGATGGGTTTCCCATGCCTGACATTTTCGGTATGGCTCCTCGTGGTTTCAATCCGTACGGTGCTAGATTTTCCGGTGAGTTTATGAATCCCCAGTCTGCTATGATGTTTCGTGGACGACCTTCTCAACCTGGCGCCATGTTTCCTCCTGGTGGGTTTGGGATGATGATGGGTCAAGGACGTGGTCCCTTTATGGGTGGGATGGGGGTTACTGGTACTAACCCAGCTCGAGCTGGTCGGCCTGTAGGACCTCCATTGTATCCACCTCCTGCAGTACCTTCATCTCAGAACATGAACCGAGCTATGAAGAGGGATCAAAGGGGACCAGGTAGTGATAGGAATGATAGATATATTGCAGGTTCAGACCAAAACAGAGGCCAGGAGATACCGGGTAGCGGACACGACGACGAAATGCAATATAAACAAGGATCAAAAGCTTATCCTGATGAGCAATATGGGATGGGAACCGCCATTAGGAACGAAGAGAGCGAAAGTGAGGACGAGGCACCTCGACGATCAAGGCACGGAGAGGGGAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCCACTGCAATCTCTGATCAGTGATTGCTTGTAGTTTCTTCCTCTGATCACTGCAAAGTTTGGAGTATTTAAGCTTCATCTCATTTTTTTTCTTCCTCTTTTCATTTTATACCTTGCTTTTTAGGTGAATTCTTGTGACGTAAACTTATAAATTTCCTAGCAGAGCCATAATTCATACATTATTTTACAAATTTGTAAAAGAACTTTCATTTGAAGGGAGGAATCTCATAAAAAAGTCGATATTTGATAACGTAGAGATGTTACAAACTTTTTAATGCATCATCCAAGATCCGTTATGTTTATGTGATTCGATGTCATTTTGTTTGCATATCTATTAGACCTTTTCATTGTCATGTCAATTGTTTACTCA

mRNA sequence

CGCGTTTAACATCACAAGAGGACCTCCGAAATTGATCTTAAAAAAACTCAAAAATTGATGAATTTAATTTTGATGATGAACAAGTTCAAAAGCAGTGTCAGTTTGAAAGCCCACCTCATATGGTCAGAAAATCCGACGGCAAATTTCTTCTTCACTCTCTGATGCAAAACCCATTTCTGCAACTCCCTTCATTGCTCTTCTGCTTCTTGTTTTGAGCTATGATCTGCTGCACAACCCTAATTCAGTAACGCTTTACCTTTCCTAATGGAGGATTCGGAGGGTGGTCTCAGCTTCGATTTCGAGGGCGGTCTTGATGCCGGTCCCACCAACCCCGCCGCCGCCTCCTTGCCCCTCATCCACTCTGACTCTTCTGCTCCTCCTGCCGCCTCCGCCGTCTCCAACTCTGGCGCCGGTGCCGGCGGTCCTCCTGTTACTGCTGACGCTTCTGGCGCCGCAACTGGCAACGTTGGCAGCCGGAGGAGCTTCCGGCAGACGGTTTGTCGGCATTGGCTCCGCAGCCTGTGTATGAAGGGCGACGCTTGTGGCTTCCTTCACCAGTATGATAAATCTCGGATGCCCATTTGCCGATTCTTCCGTCTCTATGGCGAGTGCCGTGAACAGGATTGCGTGTATAAACATACCAACGAAGATATCAAGGAGTGTAATATGTACAAGTTTGGTTTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCTAAGTTGCCGGGACCTCCACCTCCGGTGGAAGAAATCCTTCAGAAAATTCAGCATTTGGGTCCATACAATTATGGCACCTCGAACAAATTCTTTTCACAACGTGGAGTTGGCTTATCTCAACAGAACGAAAAATCTCAGTTTCCTCCGGGTCCAGCCACCGTTACTCAAGGAGTGATAGGAAAACCTTCTGTAGCAGAATCTGCTAATGTTCAACAACAGCAAGCCCAACAGTCTGCACAACAAACCAGCCAGGCTCCAATACAAACTGCTTCTAATGGTCAGGTCAATCAATTAAACAGAAATTCAACGTCTTTGCCTCCCGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGACTAGGATTGGTGGATCTGTCAGCGGGGGCAATTGGAAGTATGCACATGGAACTGCGCATTACGGGCAAAACTTTTCACTCAAATGGCTGAAGTTATGTGAACTATCCTTCCAGAAAACTCGCCATTTGAGAAATCCTTATAATGAAAACTTACCAGTAAAGATTAGTAGAGATTGCCAAGAGCTAGAACCTTCTATTGGTGAGCAGCTGGCTTCTTTGCTTTATCTTGAGCCCGATGGTGACCTCATGGCTGTCTCGATAGCAGCGGAATCAAAACGAGAAGAGGAGAAAGCAAAGGGAGTTAATCCTGATATCAGAAATGAGAATCCAGATATCGTCCCGTTTGAGGATAACGAAGAAGAGGAAGAAGAAGAAAGCGAAGAGGAGGAGGAGGAGAGCTTTGGCCAGTCCGTTGGTCCACCAGCTCAGGGCAGAGGAAGGGGCCGGGGAATGATGTGGCCTCCACACATGCCGATGGGGCGTGGTGCGAGGCCTTTCCATGGAATGCAAGGTTTTCCACCTGGGATGATGGGTCCAGATGGGATGTCATATGGACCTGTTACACCTGATGGGTTTCCCATGCCTGACATTTTCGGTATGGCTCCTCGTGGTTTCAATCCGTACGGTGCTAGATTTTCCGGTGAGTTTATGAATCCCCAGTCTGCTATGATGTTTCGTGGACGACCTTCTCAACCTGGCGCCATGTTTCCTCCTGGTGGGTTTGGGATGATGATGGGTCAAGGACGTGGTCCCTTTATGGGTGGGATGGGGGTTACTGGTACTAACCCAGCTCGAGCTGGTCGGCCTGTAGGACCTCCATTGTATCCACCTCCTGCAGTACCTTCATCTCAGAACATGAACCGAGCTATGAAGAGGGATCAAAGGGGACCAGGTAGTGATAGGAATGATAGATATATTGCAGGTTCAGACCAAAACAGAGGCCAGGAGATACCGGGTAGCGGACACGACGACGAAATGCAATATAAACAAGGATCAAAAGCTTATCCTGATGAGCAATATGGGATGGGAACCGCCATTAGGAACGAAGAGAGCGAAAGTGAGGACGAGGCACCTCGACGATCAAGGCACGGAGAGGGGAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCCACTGCAATCTCTGATCAGTGATTGCTTGTAGTTTCTTCCTCTGATCACTGCAAAGTTTGGAGTATTTAAGCTTCATCTCATTTTTTTTCTTCCTCTTTTCATTTTATACCTTGCTTTTTAGGTGAATTCTTGTGACGTAAACTTATAAATTTCCTAGCAGAGCCATAATTCATACATTATTTTACAAATTTGTAAAAGAACTTTCATTTGAAGGGAGGAATCTCATAAAAAAGTCGATATTTGATAACGTAGAGATGTTACAAACTTTTTAATGCATCATCCAAGATCCGTTATGTTTATGTGATTCGATGTCATTTTGTTTGCATATCTATTAGACCTTTTCATTGTCATGTCAATTGTTTACTCA

Coding sequence (CDS)

ATGGAGGATTCGGAGGGTGGTCTCAGCTTCGATTTCGAGGGCGGTCTTGATGCCGGTCCCACCAACCCCGCCGCCGCCTCCTTGCCCCTCATCCACTCTGACTCTTCTGCTCCTCCTGCCGCCTCCGCCGTCTCCAACTCTGGCGCCGGTGCCGGCGGTCCTCCTGTTACTGCTGACGCTTCTGGCGCCGCAACTGGCAACGTTGGCAGCCGGAGGAGCTTCCGGCAGACGGTTTGTCGGCATTGGCTCCGCAGCCTGTGTATGAAGGGCGACGCTTGTGGCTTCCTTCACCAGTATGATAAATCTCGGATGCCCATTTGCCGATTCTTCCGTCTCTATGGCGAGTGCCGTGAACAGGATTGCGTGTATAAACATACCAACGAAGATATCAAGGAGTGTAATATGTACAAGTTTGGTTTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCTAAGTTGCCGGGACCTCCACCTCCGGTGGAAGAAATCCTTCAGAAAATTCAGCATTTGGGTCCATACAATTATGGCACCTCGAACAAATTCTTTTCACAACGTGGAGTTGGCTTATCTCAACAGAACGAAAAATCTCAGTTTCCTCCGGGTCCAGCCACCGTTACTCAAGGAGTGATAGGAAAACCTTCTGTAGCAGAATCTGCTAATGTTCAACAACAGCAAGCCCAACAGTCTGCACAACAAACCAGCCAGGCTCCAATACAAACTGCTTCTAATGGTCAGGTCAATCAATTAAACAGAAATTCAACGTCTTTGCCTCCCGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAACCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGACTAGGATTGGTGGATCTGTCAGCGGGGGCAATTGGAAGTATGCACATGGAACTGCGCATTACGGGCAAAACTTTTCACTCAAATGGCTGAAGTTATGTGAACTATCCTTCCAGAAAACTCGCCATTTGAGAAATCCTTATAATGAAAACTTACCAGTAAAGATTAGTAGAGATTGCCAAGAGCTAGAACCTTCTATTGGTGAGCAGCTGGCTTCTTTGCTTTATCTTGAGCCCGATGGTGACCTCATGGCTGTCTCGATAGCAGCGGAATCAAAACGAGAAGAGGAGAAAGCAAAGGGAGTTAATCCTGATATCAGAAATGAGAATCCAGATATCGTCCCGTTTGAGGATAACGAAGAAGAGGAAGAAGAAGAAAGCGAAGAGGAGGAGGAGGAGAGCTTTGGCCAGTCCGTTGGTCCACCAGCTCAGGGCAGAGGAAGGGGCCGGGGAATGATGTGGCCTCCACACATGCCGATGGGGCGTGGTGCGAGGCCTTTCCATGGAATGCAAGGTTTTCCACCTGGGATGATGGGTCCAGATGGGATGTCATATGGACCTGTTACACCTGATGGGTTTCCCATGCCTGACATTTTCGGTATGGCTCCTCGTGGTTTCAATCCGTACGGTGCTAGATTTTCCGGTGAGTTTATGAATCCCCAGTCTGCTATGATGTTTCGTGGACGACCTTCTCAACCTGGCGCCATGTTTCCTCCTGGTGGGTTTGGGATGATGATGGGTCAAGGACGTGGTCCCTTTATGGGTGGGATGGGGGTTACTGGTACTAACCCAGCTCGAGCTGGTCGGCCTGTAGGACCTCCATTGTATCCACCTCCTGCAGTACCTTCATCTCAGAACATGAACCGAGCTATGAAGAGGGATCAAAGGGGACCAGGTAGTGATAGGAATGATAGATATATTGCAGGTTCAGACCAAAACAGAGGCCAGGAGATACCGGGTAGCGGACACGACGACGAAATGCAATATAAACAAGGATCAAAAGCTTATCCTGATGAGCAATATGGGATGGGAACCGCCATTAGGAACGAAGAGAGCGAAAGTGAGGACGAGGCACCTCGACGATCAAGGCACGGAGAGGGGAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCCACTGCAATCTCTGATCAGTGA

Protein sequence

MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADASGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSNKFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFMNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ

Homology

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 767.3 bits (1980), Expect = 1.5e-220
Identity = 442/696 (63.51%), Postives = 497/696 (71.41%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MED++ GLSFDFEGGLD+GP     AS+P+      APP      NS + A     T D 
Sbjct: 1   MEDAD-GLSFDFEGGLDSGPVQ-NTASVPV------APP-----ENSSSAAVNVAPTYDH 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           S A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQD
Sbjct: 61  SSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPPPVEE+LQKIQ L  YNYGT N
Sbjct: 121 CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYGT-N 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           + +  R V    Q+     P G   +     G+P   ES N+QQQQ QQ  QQ+     Q
Sbjct: 181 RLYQARNVAPQLQDR----PQGQVPMQ----GQPQ--ESGNLQQQQ-QQQPQQSQHQVSQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           T      +Q NR S  LP G++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 TLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
            +NVILIFSVNRTRHFQGCAKM +RIGG + GGNWK+ HGTA YG+NFS+KWLKLCELSF
Sbjct: 301 VENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
            KTR+LRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPD +LMA+SIAAE+KREEEK
Sbjct: 361 HKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNP+ R ENPDIVPFEDNEEEEEEE E EEEE   +S+    QGRGRGRG+MWPP M
Sbjct: 421 AKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGP-DGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEF 540
           P+GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR F PYG RF G+F
Sbjct: 481 PLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGPRFGGDF 540

Query: 541 MNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYP 600
             P   MMF GRP Q    FP GG+G MMG GRGP MGGMG    N  R GR    P+Y 
Sbjct: 541 RGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMG----NAPRGGR----PMYY 600

Query: 601 PPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYP 660
           PPA  S++      K  +R      ++R ++G  QN+      + HD             
Sbjct: 601 PPATSSARPGPSNRKTPERS-----DERGVSGDQQNQ-----DASHD------------- 631

Query: 661 DEQYGMGTAIRNEESES--EDEAPRRSRHGEGKKKR 694
            EQ+ +G ++RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 661 MEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 3.4e-204
Identity = 411/704 (58.38%), Postives = 483/704 (68.61%), Query Frame = 0


Query: 5   EGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADASGAA 64
           +G LSFDFEGGLD  P        P     SS P         G G GGP       G  
Sbjct: 3   DGDLSFDFEGGLDQPPAGGGGGPAP----HSSDPGGV----GGGGGGGGP-----GDGGG 62

Query: 65  TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYK 124
            G    R S+RQTVCRHWLR LCMKG+ACGFLHQ+DK+RMP+CRFFR +GECRE DC YK
Sbjct: 63  HGRGRGRGSYRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYK 122

Query: 125 HTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSNKFFS 184
           H+ +D+KECNMYK GFCPNGP+CRY+H KLPGPPPPVEE+LQKI  +  +     NKF  
Sbjct: 123 HSYDDVKECNMYKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSF-----NKFNQ 182

Query: 185 QRGVGLSQQNEKSQFPPGPATVTQGVI-------GKPSVAESANV------QQQQAQQSA 244
            R    +QQ E+ Q P G     Q  I        +P+V + A        QQQQ QQ  
Sbjct: 183 HRHNNYNQQGERPQHPQGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQ 242

Query: 245 QQTSQAP-----IQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWAT 304
           QQ  Q P     +Q+  NG  NQ  R +T LP G SRYFIVKSCNRENLE+SVQQG+WAT
Sbjct: 243 QQQQQKPNTNDQVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWAT 302

Query: 305 QRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQ 364
           QRSNEAKLNEAF+S +NVILIFS+NRTR+FQGCAKM +RIGG + GGNWK AHGTAHYG+
Sbjct: 303 QRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGR 362

Query: 365 NFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLM 424
           NFS++WLKLCELSFQKT HLRNPYN+NLPVKISRDCQELEP IGEQLASLLYLEPD +L 
Sbjct: 363 NFSIQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELT 422

Query: 425 AVSIAAESKREEEKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQ 484
           A+ IAAE+K+EEEKAKGV+ D   +N DIV F+DNEEEEEEESEEEEE +     G  +Q
Sbjct: 423 AILIAAEAKKEEEKAKGVSADEAADNQDIVLFDDNEEEEEEESEEEEEGN-----GQESQ 482

Query: 485 GRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPR 544
           GRGRGRGMMWPP MPM RG  P  G +GFPP M+G DG  +G     GF MPD FG+ PR
Sbjct: 483 GRGRGRGMMWPPQMPMLRGVGPMMGGRGFPPNMIG-DGFGFG----GGFGMPDPFGV-PR 542

Query: 545 GFNPYGARFSGEFM--NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGT 604
           GF P+G RF G+F    P   M+F GRP QPG MFP  G  MMMG GRGP MGG+G+ G 
Sbjct: 543 GFPPFGPRFPGDFARGGPMPGMVFPGRPPQPGGMFPM-GLEMMMGPGRGPLMGGLGMGG- 602

Query: 605 NPARAGRPVG-PPLYPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQ-NRGQEIPG 664
            P R  RPVG  P  PPP  P+    NR  KR+QR PG +R DRY   SDQ +RG +  G
Sbjct: 603 -PGRPNRPVGMAPFMPPPPPPN----NRGTKREQRRPGGERGDRYETTSDQGSRGHDATG 662

Query: 665 SGHDDEMQYKQGSKAYPDEQYGMGTAIRNEESESEDE-APRRSR 686
           +         +G+++   ++YG  +A+R+++SES++E APRRSR
Sbjct: 663 NSG------AEGARSQSGDRYGR-SALRDDDSESDEEAAPRRSR 663

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy Swiss-Prot
Match: B2RR83 (3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-25
Identity = 72/181 (39.78%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 224  QQQAQQSAQQTSQAPIQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGV 283
            Q   + +   +  +P  + S     + +++ +  P    RYFI+KS N  NLE+S Q+G+
Sbjct: 1265 QSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGI 1324

Query: 284  WATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAH 343
            W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M + IG   S  +W    G+A 
Sbjct: 1325 WSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS-QDW----GSAG 1384

Query: 344  YGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG 403
             G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQL  L    P G
Sbjct: 1385 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLG 1440

Query: 404  D 405
            +
Sbjct: 1445 E 1440

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy Swiss-Prot
Match: Q5R746 (3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-25
Identity = 72/181 (39.78%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 224  QQQAQQSAQQTSQAPIQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGV 283
            Q   + +   +  +P  + S     + +++ +  P    RYFI+KS N  NLE+S Q+G+
Sbjct: 1250 QSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGI 1309

Query: 284  WATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAH 343
            W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M + IG   S  +W    G+A 
Sbjct: 1310 WSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS-QDW----GSAG 1369

Query: 344  YGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG 403
             G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQL  L    P G
Sbjct: 1370 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLG 1425

Query: 404  D 405
            +
Sbjct: 1430 E 1425

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy Swiss-Prot
Match: Q9H6S0 (3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-24
Identity = 72/181 (39.78%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 224  QQQAQQSAQQTSQAPIQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGV 283
            Q   + +   +  +P  + S     + +++ +  P    RYFI+KS N  NLE+S Q+G+
Sbjct: 1250 QSSLKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGI 1309

Query: 284  WATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAH 343
            W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M + IG   S  +W    G+A 
Sbjct: 1310 WSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKS-QDW----GSAG 1369

Query: 344  YGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG 403
             G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQL  L    P G
Sbjct: 1370 LGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQLLQLWERLPLG 1425

Query: 404  D 405
            +
Sbjct: 1430 E 1425

[Close]

BLAST of Cp4.1LG09g07310 vs. NCBI nr
Match: XP_023541976.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1401 bits (3626), Expect = 0.0
Identity = 706/706 (100.00%), Postives = 706/706 (100.00%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
Sbjct: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM
Sbjct: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600
           NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
Sbjct: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600

Query: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660
           PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
Sbjct: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660

Query: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]

BLAST of Cp4.1LG09g07310 vs. NCBI nr
Match: XP_022955036.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita moschata])

HSP 1 Score: 1398 bits (3619), Expect = 0.0
Identity = 704/706 (99.72%), Postives = 705/706 (99.86%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSS PPAASAVSN+GAGAGGPPVTADA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNTGAGAGGPPVTADA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
Sbjct: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM
Sbjct: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600
           NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
Sbjct: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600

Query: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660
           PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
Sbjct: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660

Query: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]

BLAST of Cp4.1LG09g07310 vs. NCBI nr
Match: KAG6573397.1 (30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012560.1 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1397 bits (3615), Expect = 0.0
Identity = 703/706 (99.58%), Postives = 704/706 (99.72%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSS PPAASAVSN+GAGAGGPPVTADA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNTGAGAGGPPVTADA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
Sbjct: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM
Sbjct: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600
           NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
Sbjct: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600

Query: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660
           PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
Sbjct: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660

Query: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           EQYGMGT IRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 EQYGMGTTIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]

BLAST of Cp4.1LG09g07310 vs. NCBI nr
Match: XP_022994747.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita maxima])

HSP 1 Score: 1394 bits (3609), Expect = 0.0
Identity = 701/706 (99.29%), Postives = 704/706 (99.72%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSS PPAASAVSNSGAGAGGPPVTADA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNSGAGAGGPPVTADA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRGVGLSQQNEKSQFPPGP T+TQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
Sbjct: 181 KFFSQRGVGLSQQNEKSQFPPGPVTITQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           +ASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 SASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRG+MWPPHM
Sbjct: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGIMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600
           NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
Sbjct: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600

Query: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660
           PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
Sbjct: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660

Query: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]

BLAST of Cp4.1LG09g07310 vs. NCBI nr
Match: XP_022140120.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia])

HSP 1 Score: 1265 bits (3274), Expect = 0.0
Identity = 641/707 (90.66%), Postives = 660/707 (93.35%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MED EG LSFDFEGGLDAGPTNPAA SLPLI SD SAPPAASAVS+SG GA G  VT +A
Sbjct: 1   MEDPEGVLSFDFEGGLDAGPTNPAATSLPLIQSDPSAPPAASAVSSSGPGAVGHAVTVEA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
            GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  GGAVTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHL  YNYG SN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYNYGPSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRG GLS Q EK QFP GPATV QGV+GKPS AESANVQQ QAQQSAQQTSQ  IQ
Sbjct: 181 KFFSQRGAGLSHQIEKPQFPQGPATVNQGVVGKPSTAESANVQQPQAQQSAQQTSQTQIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           + SNGQ NQLNR +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 SLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVS+AAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDI +ENPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRG+MWPPHM
Sbjct: 421 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG RFSG+FM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVG-PPLYP 600
            P SAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTG NPAR GRPV    LYP
Sbjct: 541 GPPSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQLYP 600

Query: 601 PPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYP 660
           PPAVP SQNMNR +KRDQRGPG+DRNDRYIAG DQ++GQE+PGSGHDDEMQYKQGSKAYP
Sbjct: 601 PPAVPPSQNMNRVVKRDQRGPGNDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKAYP 660

Query: 661 DEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           DEQYG+GT  RNEESESEDEAPRRSRHGEGKKKRRGSEGDAT +SDQ
Sbjct: 661 DEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATVVSDQ 707

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy TrEMBL
Match: A0A6J1GSL5 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita moschata OX=3662 GN=LOC111457116 PE=4 SV=1)

HSP 1 Score: 1398 bits (3619), Expect = 0.0
Identity = 704/706 (99.72%), Postives = 705/706 (99.86%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSS PPAASAVSN+GAGAGGPPVTADA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNTGAGAGGPPVTADA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
Sbjct: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM
Sbjct: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600
           NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
Sbjct: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600

Query: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660
           PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
Sbjct: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660

Query: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy TrEMBL
Match: A0A6J1JWQ9 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxima OX=3661 GN=LOC111490386 PE=4 SV=1)

HSP 1 Score: 1394 bits (3609), Expect = 0.0
Identity = 701/706 (99.29%), Postives = 704/706 (99.72%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSS PPAASAVSNSGAGAGGPPVTADA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSVPPAASAVSNSGAGAGGPPVTADA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRGVGLSQQNEKSQFPPGP T+TQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
Sbjct: 181 KFFSQRGVGLSQQNEKSQFPPGPVTITQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           +ASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 SASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRG+MWPPHM
Sbjct: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGIMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600
           NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
Sbjct: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP 600

Query: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660
           PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
Sbjct: 601 PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD 660

Query: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy TrEMBL
Match: A0A6J1CE78 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia OX=3673 GN=LOC111010855 PE=4 SV=1)

HSP 1 Score: 1265 bits (3274), Expect = 0.0
Identity = 641/707 (90.66%), Postives = 660/707 (93.35%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MED EG LSFDFEGGLDAGPTNPAA SLPLI SD SAPPAASAVS+SG GA G  VT +A
Sbjct: 1   MEDPEGVLSFDFEGGLDAGPTNPAATSLPLIQSDPSAPPAASAVSSSGPGAVGHAVTVEA 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
            GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
Sbjct: 61  GGAVTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHL  YNYG SN
Sbjct: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYNYGPSN 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           KFFSQRG GLS Q EK QFP GPATV QGV+GKPS AESANVQQ QAQQSAQQTSQ  IQ
Sbjct: 181 KFFSQRGAGLSHQIEKPQFPQGPATVNQGVVGKPSTAESANVQQPQAQQSAQQTSQTQIQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           + SNGQ NQLNR +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 SLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
           ADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
Sbjct: 301 ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
           QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVS+AAESKREEEK
Sbjct: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNPDI +ENPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRG+MWPPHM
Sbjct: 421 AKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM 540
           PMGRGARPFHGMQGFPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG RFSG+FM
Sbjct: 481 PMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFM 540

Query: 541 NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVG-PPLYP 600
            P SAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTG NPAR GRPV    LYP
Sbjct: 541 GPPSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQLYP 600

Query: 601 PPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYP 660
           PPAVP SQNMNR +KRDQRGPG+DRNDRYIAG DQ++GQE+PGSGHDDEMQYKQGSKAYP
Sbjct: 601 PPAVPPSQNMNRVVKRDQRGPGNDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKAYP 660

Query: 661 DEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           DEQYG+GT  RNEESESEDEAPRRSRHGEGKKKRRGSEGDAT +SDQ
Sbjct: 661 DEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATVVSDQ 707

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 1240 bits (3209), Expect = 0.0
Identity = 637/713 (89.34%), Postives = 657/713 (92.15%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAA------SLPLIHSDSSAPPAASAVSNSGAGAGGP 60
           MEDSEG LSFDFEGGLDA PTNPAAA      SLPLI SDSSAPP    +SNS  G+ GP
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPPP---LSNSLPGSLGP 60

Query: 61  PVTADASGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120
            +  +  GA T NVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG
Sbjct: 61  TLAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120

Query: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPY 180
           ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLG Y
Sbjct: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSY 180

Query: 181 NYGTSNKFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQT 240
           NYG+SNKFFSQRGVGL QQNEKSQFP GPA VTQGVIGKPS AESANVQQQQ QQ AQQT
Sbjct: 181 NYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQT 240

Query: 241 SQAPIQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300
           SQ  IQ+ SNGQ NQLNR +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL
Sbjct: 241 SQTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300

Query: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360
           NEAFDSADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLK
Sbjct: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360

Query: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAES 420
           LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVSIAAES
Sbjct: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAES 420

Query: 421 KREEEKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGM 480
           KREEEKAKGVNPDI NENPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRG+
Sbjct: 421 KREEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGI 480

Query: 481 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGAR 540
           MWPPHMPMGRGARPFHGMQ FPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG R
Sbjct: 481 MWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPR 540

Query: 541 FSGEFMNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVG 600
           FSG+FM P SAMMFRGRPSQPGAMF PGGFGMMMGQGRGPFMGGMGVTGT+PAR GRPVG
Sbjct: 541 FSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVG 600

Query: 601 -PPLYPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQ 660
             PLYPPPAVPS+QN+NRA+KRDQRGP SDRNDRYI G DQN+GQE+  SGHD+ MQYKQ
Sbjct: 601 VSPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQ 660

Query: 661 GSKAYPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           GSKAYPDEQYGMGT  RNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 GSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of Cp4.1LG09g07310 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 1240 bits (3209), Expect = 0.0
Identity = 637/713 (89.34%), Postives = 657/713 (92.15%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAA------SLPLIHSDSSAPPAASAVSNSGAGAGGP 60
           MEDSEG LSFDFEGGLDA PTNPAAA      SLPLI SDSSAPP    +SNS  G+ GP
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPPP---LSNSLPGSLGP 60

Query: 61  PVTADASGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120
            +  +  GA T NVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG
Sbjct: 61  TLAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120

Query: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPY 180
           ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLG Y
Sbjct: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSY 180

Query: 181 NYGTSNKFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQT 240
           NYG+SNKFFSQRGVGL QQNEKSQFP GPA VTQGVIGKPS AESANVQQQQ QQ AQQT
Sbjct: 181 NYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQT 240

Query: 241 SQAPIQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300
           SQ  IQ+ SNGQ NQLNR +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL
Sbjct: 241 SQTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300

Query: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360
           NEAFDSADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLK
Sbjct: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360

Query: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAES 420
           LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVSIAAES
Sbjct: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAES 420

Query: 421 KREEEKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGM 480
           KREEEKAKGVNPDI NENPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRG+
Sbjct: 421 KREEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGI 480

Query: 481 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGAR 540
           MWPPHMPMGRGARPFHGMQ FPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG R
Sbjct: 481 MWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPR 540

Query: 541 FSGEFMNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVG 600
           FSG+FM P SAMMFRGRPSQPGAMF PGGFGMMMGQGRGPFMGGMGVTGT+PAR GRPVG
Sbjct: 541 FSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVG 600

Query: 601 -PPLYPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQ 660
             PLYPPPAVPS+QN+NRA+KRDQRGP SDRNDRYI G DQN+GQE+  SGHD+ MQYKQ
Sbjct: 601 VSPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQ 660

Query: 661 GSKAYPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706
           GSKAYPDEQYGMGT  RNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
Sbjct: 661 GSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of Cp4.1LG09g07310 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 767.3 bits (1980), Expect = 1.1e-221
Identity = 442/696 (63.51%), Postives = 497/696 (71.41%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MED++ GLSFDFEGGLD+GP     AS+P+      APP      NS + A     T D 
Sbjct: 1   MEDAD-GLSFDFEGGLDSGPVQ-NTASVPV------APP-----ENSSSAAVNVAPTYDH 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           S A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQD
Sbjct: 61  SSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPPPVEE+LQKIQ L  YNYGT N
Sbjct: 121 CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYGT-N 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           + +  R V    Q+     P G   +     G+P   ES N+QQQQ QQ  QQ+     Q
Sbjct: 181 RLYQARNVAPQLQDR----PQGQVPMQ----GQPQ--ESGNLQQQQ-QQQPQQSQHQVSQ 240

Query: 241 TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS 300
           T      +Q NR S  LP G++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFDS
Sbjct: 241 TLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDS 300

Query: 301 ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF 360
            +NVILIFSVNRTRHFQGCAKM +RIGG + GGNWK+ HGTA YG+NFS+KWLKLCELSF
Sbjct: 301 VENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSF 360

Query: 361 QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK 420
            KTR+LRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPD +LMA+SIAAE+KREEEK
Sbjct: 361 HKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEK 420

Query: 421 AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM 480
           AKGVNP+ R ENPDIVPFEDNEEEEEEE E EEEE   +S+    QGRGRGRG+MWPP M
Sbjct: 421 AKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQM 480

Query: 481 PMGRGARPFHGMQGFPPGMMGP-DGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEF 540
           P+GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR F PYG RF G+F
Sbjct: 481 PLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGPRFGGDF 540

Query: 541 MNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYP 600
             P   MMF GRP Q    FP GG+G MMG GRGP MGGMG    N  R GR    P+Y 
Sbjct: 541 RGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMG----NAPRGGR----PMYY 600

Query: 601 PPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYP 660
           PPA  S++      K  +R      ++R ++G  QN+      + HD             
Sbjct: 601 PPATSSARPGPSNRKTPERS-----DERGVSGDQQNQ-----DASHD------------- 631

Query: 661 DEQYGMGTAIRNEESES--EDEAPRRSRHGEGKKKR 694
            EQ+ +G ++RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 661 MEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of Cp4.1LG09g07310 vs. TAIR 10
Match: AT1G30460.2 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 277.7 bits (709), Expect = 2.6e-74
Identity = 158/263 (60.08%), Postives = 177/263 (67.30%), Query Frame = 0


Query: 1   MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA 60
           MED++ GLSFDFEGGLD+GP     AS+P+      APP      NS + A     T D 
Sbjct: 1   MEDAD-GLSFDFEGGLDSGPVQ-NTASVPV------APP-----ENSSSAAVNVAPTYDH 60

Query: 61  SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD 120
           S A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQD
Sbjct: 61  SSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQD 120

Query: 121 CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN 180
           CVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPPPVEE+LQKIQ L  YNYGT N
Sbjct: 121 CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYGT-N 180

Query: 181 KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ 240
           + +  R V    Q+     P G   +     G+P   ES N+QQQQ QQ  QQ+     Q
Sbjct: 181 RLYQARNVAPQLQDR----PQGQVPMQ----GQPQ--ESGNLQQQQ-QQQPQQSQHQVSQ 238

Query: 241 TASNGQVNQLNRNSTSLPPGISR 264
           T      +Q NR S  LP G++R
Sbjct: 241 TLIPNPADQTNRTSHPLPQGVNR 238

[Close]

BLAST of Cp4.1LG09g07310 vs. TAIR 10
Match: AT4G11970.1 (YTH family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-32
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 246 QVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVI 305
           Q+     N  S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  VI
Sbjct: 56  QLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVI 115

Query: 306 LIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQKTR 365
           LIFSVN +  FQG A+M++ +G       W    G  + +G++F +KWL+L EL FQKT 
Sbjct: 116 LIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTL 175

Query: 366 HLRNPYNENLPVKISRDCQELEPSIGEQLASLL 398
           HL+NP N+  PVKISRDCQEL   IGE L  LL
Sbjct: 176 HLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]

BLAST of Cp4.1LG09g07310 vs. TAIR 10
Match: AT4G11970.2 (YTH family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-32
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 246 QVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVI 305
           Q+     N  S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  VI
Sbjct: 56  QLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVI 115

Query: 306 LIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQKTR 365
           LIFSVN +  FQG A+M++ +G       W    G  + +G++F +KWL+L EL FQKT 
Sbjct: 116 LIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTL 175

Query: 366 HLRNPYNENLPVKISRDCQELEPSIGEQLASLL 398
           HL+NP N+  PVKISRDCQEL   IGE L  LL
Sbjct: 176 HLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]

BLAST of Cp4.1LG09g07310 vs. TAIR 10
Match: AT4G11970.3 (YTH family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-32
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 246 QVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVI 305
           Q+     N  S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  VI
Sbjct: 56  QLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVI 115

Query: 306 LIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQKTR 365
           LIFSVN +  FQG A+M++ +G       W    G  + +G++F +KWL+L EL FQKT 
Sbjct: 116 LIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQKTL 175

Query: 366 HLRNPYNENLPVKISRDCQELEPSIGEQLASLL 398
           HL+NP N+  PVKISRDCQEL   IGE L  LL
Sbjct: 176 HLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g07310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LNK9	1.5e-220	63.51	30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian...	[more]
Q0DA50	3.4e-204	58.38	Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX...	[more]
B2RR83	3.7e-25	39.78	3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1	[more]
Q5R746	3.7e-25	39.78	3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2	[more]
Q9H6S0	1.1e-24	39.78	3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2	[more]

BLAST of Cp4.1LG09g07310 vs. NCBI nr


Match Name	Identity	Description
XP_023541976.1	100.00	30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita pepo s...	[more]
XP_022955036.1	99.72	30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita moscha...	[more]
KAG6573397.1	99.58	30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita ar...	[more]
XP_022994747.1	99.29	30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita maxima...	[more]
XP_022140120.1	90.66	30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]	[more]

BLAST of Cp4.1LG09g07310 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1GSL5	99.72	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita mosc...	[more]
A0A6J1JWQ9	99.29	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxi...	[more]
A0A6J1CE78	90.66	30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia...	[more]
A0A5D3C2W1	89.34	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m...	[more]
A0A1S3BC28	89.34	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365...	[more]

BLAST of Cp4.1LG09g07310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30460.1	1.1e-221	63.51	cleavage and polyadenylation specificity factor 30	[more]
AT1G30460.2	2.6e-74	60.08	cleavage and polyadenylation specificity factor 30	[more]
AT4G11970.1	2.4e-32	48.37	YTH family protein	[more]
AT4G11970.2	2.4e-32	48.37	YTH family protein	[more]
AT4G11970.3	2.4e-32	48.37	YTH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 435..455
None	No IPR available	GENE3D	3.10.590.10	ph1033 like domains	coord: 240..400 e-value: 3.6E-53 score: 181.3
None	No IPR available	GENE3D	4.10.1000.10		coord: 67..131 e-value: 1.4E-15 score: 59.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 580..706
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 671..700
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 640..654
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..457
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..495
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..68
None	No IPR available	PANTHER	PTHR12357:SF106	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45	coord: 1..704
None	No IPR available	PANTHER	PTHR12357	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	coord: 1..704
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 129..153 e-value: 0.052 score: 22.7 coord: 73..99 e-value: 3.5E-4 score: 29.9 coord: 101..127 e-value: 0.051 score: 22.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 73..100 score: 12.83077
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 127..154 score: 12.089031
IPR007275	YTH domain	PFAM	PF04146	YTH	coord: 262..396 e-value: 1.2E-44 score: 152.7
IPR007275	YTH domain	PROSITE	PS50882	YTH	coord: 262..397 score: 58.534847
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 75..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g07310.1	Cp4.1LG09g07310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:1990247	N6-methyladenosine-containing RNA binding
molecular_function	GO:0003723	RNA binding