Cp4.1LG09g06440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g06440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG09: 4852057 .. 4852353 (-)
RNA-Seq Expression	Cp4.1LG09g06440
Synteny	Cp4.1LG09g06440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

mRNA sequence

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ

Homology

[Close]

BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (471), Expect = 5.49e-59
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60
          MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
          FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ
Sbjct: 61 FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (468), Expect = 1.58e-58
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60
          MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
          FGGGFQVGTEVHGE+AGERILDYVAGRPEYAEYQYKYQ
Sbjct: 61 FGGGFQVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 2.68e-45
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (378), Expect = 7.67e-45
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (274), Expect = 1.55e-27
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAM-TAFGGG 65
           +QTKVLQ+KDQ+TVVAAVSVV+SLF          LAFFWPLF STA LLV M  AF GG
Sbjct: 134 VQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFRGG 193

Query: 66  FQVGTEVHGERA-GERILDYVAGRPEYAEYQYKYQ 98
           FQVGT++HG RA GE ILDYVAGRPEY +  YKY+
Sbjct: 194 FQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

[Close]

BLAST of Cp4.1LG09g06440 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.30e-45
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cp4.1LG09g06440 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 3.72e-45
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cp4.1LG09g06440 vs. ExPASy TrEMBL
Match: A0A396J444 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.50e-24
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 2   DIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAF 61
           D  V+  K+L+++ Q+T+   +S+V SL +Y AP FL++LA+FWPLF ST V LVA+ AF
Sbjct: 66  DTMVLSQKLLKYRYQITIAILISLVFSLLIYGAPHFLTMLAYFWPLFASTTVFLVAIIAF 125

Query: 62  GGGFQVGTEVHGERAGERILDYVAGRPEYA-EYQYKY 97
           GG  +  TE HGE+AGE +LDYVAG+PE+  E QY +
Sbjct: 126 GGVSKFSTESHGEKAGEGLLDYVAGKPEHTQESQYNF 162

[Close]

BLAST of Cp4.1LG09g06440 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.25e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  LT+ A V +V+SL +YAAPR ++ILAFFWPLF STAVLL+A+ AFGG  
Sbjct: 3  IPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGGLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEY 90
          Q  TE HG +AG+ IL+YV G+PE+
Sbjct: 63 QFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of Cp4.1LG09g06440 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 2.64e-24
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Cp4.1LG09g06440 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-14
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLF STA  L AM    GGF
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFL-AMAITFGGF 183

Query: 66  QVGTEVHGERAGERILDYVAGRPE 90
           Q   ++  E  GER++DYVAGRPE
Sbjct: 184 Q---QLSEEATGERLMDYVAGRPE 203

[Close]

BLAST of Cp4.1LG09g06440 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.8e-06
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 9  KVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQV- 68
          K+L+ K Q+     +S++    V  +P FL++L++FWPLFLSTA+ L A+  F     + 
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 --GTEVHGERAG-----ERILDYVAG 87
             T + GE AG     E ILDYV G
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06440 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012637.1	5.49e-59	100.00	hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573520.1	1.58e-58	98.98	hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN64996.1	2.68e-45	86.02	hypothetical protein Csa_022896 [Cucumis sativus]	[more]
KAA0042343.1	7.67e-45	83.87	hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546...	[more]
KAG6583721.1	1.55e-27	68.42	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG09g06440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8	1.30e-45	86.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
A0A5D3CU44	3.72e-45	83.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A396J444	1.50e-24	52.58	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 ...	[more]
A0A2N9EZM9	2.25e-24	58.82	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]
A0A061GGG1	2.64e-24	51.61	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g06440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	2.1e-14	52.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	7.8e-06	39.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125:SF7	TRANSMEMBRANE PROTEIN	coord: 6..92
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 6..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g06440.1	Cp4.1LG09g06440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane