Cp4.1LG09g06060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g06060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ELMO/CED-12 family protein
Location	Cp4.1LG09: 4071814 .. 4078281 (+)
RNA-Seq Expression	Cp4.1LG09g06060
Synteny	Cp4.1LG09g06060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGCGCGAGGGATGAGGAATCAGAGAACTACGGAGATTGTTCGGCGCTGCTCACACATTTCCTTCGCCGTCTCTGGTAATGCTTCTCTCAACGCTTCTTCTCTATTTGCCTGTTCTTAGACGCATTTGAATTAGCTTTCTTTAGGAATTACTGCAAGTTTCAGTCAGATGCAGGCCATACAAACTCACTTGATATGGTGATTTAGCCTGTAAAAGACTTGCGGTTAGTATCATTTTTCTCAGCCTCCGCAGGAGTGAATTAGAAAAGGAAAAACGAGGTAGAATAGGGAAAGATCTGGTCGGGTACTATTTTTCTATGTTGTTCAGTGATATAATGGCTGATTTAGTGGGAATAGTTTCAAGTTTAAGCTTAAATTTGAACCTGATCATGTGATGTGTGGAACGCCAACTTGGATTGGCAAGGGAATCACTTGCATTTGCTTCAAGCTGAACGGAAATTATGACCGATTTCGTTCTACCTGACTCCTGCACAAATTAATCACGTTCTGTACGAACAAGACGCTTCCTCCATATGGATACTTTTCAAATTTTCAAATAGTTTTGGTAATGATTCTTGTCATCTATGTATGTACTGTCTTTTTAACTTGATGAAAATCGTTGTATGGCTGATTGCCTCAGAATAACATTTGCATTTTTGATCTCAGGAAGATAGGTTAAGAACATTAAAGCACCGATCAAGAACAGACCGACAAGTTTCCATATATTTTCAAATTTCATGCCTAAGTTTAGTGCTTAGACGATTCTCAAAGCACAGAAACTTTATTTCATATGTGGAGTAACTTCTCAACCATCAATAACGTTTGCTTCTAATGTCACTGTACAACAATCTTTATGTTATTAGTTGTATGTGCACACCTTGCTTTTTAGGATGCTTATTATGAAATTTTCACCAAGGACAGGATGCTCTAAGAGCTCTGTGGTATGCTGCTTATCCTGATCAAGAGCTTCAGGCGTGGTATCAGATCAATGGAAAGAAATGGGATGGCAGGGAAGAAACCCATCGACTGATTTTAGGTCGTCAATTTGCTGCATGAGTTGAGGGCTCCTTTCATTGCTCTGAAAAGCTTTTACCTAATCCAAAGGATCTGGATTTATCTCTTTGGAGAATCTGCTGTTCTTAAGATCCTAAACTTCATTTGATACCTGACATAAATTTTCAGATTCTTTTCACCTGAATGGGCCAACAAATTTATGAAATTAAGTTCAAAACTCCCAATAGATGACCGAGTATAGCATGCTATTATGCCTTTACTAATCCTTGTTGCCTTTTTTATTGTTTCAAACATCTTTCCAACGTCTGTTAAGAAAACAAGGAAGAAACCCAGCTGCTTAGGAATACCACTTTGCTTTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTCGATCTAGATGGTTGTGAGTTGAAAATCCATTTCTGCGTAGTGACAGTTCACCAATGGAGCTTCATTGCTTAATATTTTCTAAGTAGAGCACTGCCGTTTTGATATTTTATAGAAACTTGTATATTTTTTGAAAGAGAACTAAGGCAGCTCACCTTTTCAAATGCAGCAAACCAAGGACTTCTATCAGATCAGTGTTCCTTCAGATGTTGTCAGGTACATATCTAAACTTAATCCAGGAACATATCAAATATGAAGTTGTGCATGAATGCAAGAAACACAATTTTCTGATAACAGAGAATAATTTCATGTTGGAATGCCTAAGCTACGTGATGTTCTTTGTACCATTACAAATTTATCAGTACAGGTAGGTGATTCAATGTTGTGGCATTGTTCGTGTAGATACTATTATGGATTTTAGTACTGGGAAATAGGATCTGAAGAAATTAGTTTTATAATTGCTTCTACATTTCACTTCCCCTCACGATCACAAGTTCATTCTTCAGCACGAGAATGGACCAATATTTTCCTATTGTTGAGAAGTTTGATTCAAATCTGAAGATTTCTTGCTTGATTTTCTATGGTTAACAATTATTATTTTGCCAACATAAATATCTCATTGGTTAAATTAGTATTCCTACCTATTTTCTTTAAGATGTGAGATGCTATATTACAAAATGGCAATTATTGTCATTTTAATTTGGTGTAAATCCTATTTTGGTTTCAAAGTTTATTCTATTTTGGTTCTCAAATTTTCAAAATATTCATTTTGGTCGTTAGAACTTTTAGATTTATTCTCTGTTGGTCCGTGAGCTTTTAAAATGTTTTCAAAAAAGATAGGTTTGAGTATGTATACATGTTAATATAAACATAATTTCAAGTCATATGAGTCAGGAACAAGTATTTGACAAGTCGAGATTAGATGGAAAGATAATACGGTTATGACTAAAATAAACATTTTGAAAGTTTGACCAAAATGGAATGAACTTGAAAGTTTACTAACTAAAATAGTATTTAACCCATCTAAAATTTTCCAAATTTTGAATCTTATTAAAAAAGTTAAAAAATTATTTTGATTAAAGTACTTTTGAACTTATTTTATTTTAGTCATTAAACTTAGTTTGAATTTAATTTTTGCCCAACTTGACAGCAAAAAAAAAAAACAGTAATAATATATCTCCATTTAAGAAAAGATACGATATGAATATCATTTGAACATTTGTAGAGGAAAGATTAATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTAACCATAGACCAATTTAAAGATTTAGTCAAAGTATATGAACTAAAATATCACCAAAAAAAAAAAAAAAACAATAGGTCTGAGCATCTACTTTTAAACGCTTTTTTTTCTCCTAAAGGCTAAAGATATTTATTAAATAAAAATTTGAAGGGCATGCGGTTTCAAGTGCTTTTGTTACTGTGTACAAAGTAAAGCTTCTTTTGTCTCTTTTCCCTCTCTACTTTTTTCTTCTTGAATAATCCTGATGGTAGTCAATTAGCTGGAGGCTGTACTTGAATAGGATGCACTACTTTCTGTTTATATTTTTTCTGGTGGGAGTTCGTCTGCAACTTACTTCCTGTCCTGCTAGTGATTTAAACTGTGATGATTGGTTCTAGTTTTGTTGTGTCCCCGCTCCTTTATGTGCCTATTATGAACAAGATTTTGCCTTAGATCCTTGCAAAAATTACTCTGTTCCTAGCAATGTGGGGTTATTGCTGCATATCCTGCAAGGAAAGATTTGATTTCAATATCTGCCGGATTCTTTTTGTGCGATTATGATTTGAAAACATATTGTTTGTCATAGATTCCTTCATTTGAAGACTTGGTGTATAATTAACTGAACGTTATTCTTATTCCTAAGATTGCTTCTGATTACTTTACATATACGATTTGAGAAAAAAAAACAGTTCCATATGCTTCAAAATGCATACCTTTTGGGCGTATCTAGATGCATGATTAGAGATTTAATAAAGAAAAAGTGGTAAAGAGAAACTTATTGGCTATTAAGCAGTGGCCATTAAGCTTGCACTACATGAAATAAGTTCTGGATTAAGCAACCTTTTTAATTTATTAAATACTTTGTTTCTTTATTCTGGGTGGCCCCGTACATATGGCTGCCACTTTTTGATGTTCTTATCCTAAGAAAGCAACATTTTTCCACAACAGTTCTTAATTTGACTGTATTTTACATTATACGAAGGTAGAGGAACTTTATCACTCGCCCAACCATGCATGTTCTTATCATAGCTAGCCTTTAGCCTTTCCCTATACAGCAGGATTAGGTTGTCTGGTGAGTTTAAGTTTAGTTAAAGGCTGGTGTGTTGGTTGGGGATGTTGAGGATTATTGAGAAGAGTAGTCTCGCATTGGCTAATTAAGAGGAAGATCATGAAAACACTATCTCCATTTGTACGAGGCCTTTTGGAGAAACTAAAAGCAAATCCATGAAAGTTTATGCTTAAAGTAGACAATATTATACCATTATGGAGGTTTGTGGTTTCTAACATGGTATCAGAGTCATGTCCTTAACTTAGTCATCTCAATAGAATCCTCAAGTGTCGAACAAAGAAGTTGTGAATCTCGAAAGTGTAGTCAAATGTGACTCAAGTGTCGAACAAATGGTATATTTTGTTCGAGGGCTCCAGAGAAGGACTAATCTCGCTTAAGGGGAGACTGTTTGAGAGGTCTAGAGAAAGAGACCTCAATGGAGGCTCTATAGTGTACTTTGTTCAAGGGGAAAATTGTTAAGGATTATTGAGAGAAGCAGTCTCACACTGGCTAATTAAAGATCATGAGAACACTATTTTCATTAGTATGAGGTCTTTTAGAGAAACTGAAAGCGAATCCATAAGTGCTTATGCTCAAAGTGGACAATATCATACTATCACGAAGGTTCGTGGTTTCTAATAGAAGACACCTTGATATTAGTAGTGTCGATGGCCACCTTGGTATTAGTGGTGCCGATGAAGAAGATCTTGAACACACCTTGCTACTAGTGGAAAGAAGCCTCATGGGAAGAAAGCAACAGATAACAGTCACGGGGGGTGGTCCAGCGACTGGGTTAGTGGATATAAAAAAGATTAGAATAGGGATATTATTCAAATGTAAAAGCTAGCCAGCATTCCGAATTCTGTTGCAGGGGGAAAATTCTTGATTCCTGTTAGTCGAGTTCTAATTGGTGGTCTTTGTCCCAAAATTATAATCACCAGCCTGGGAAAACCACAGGTCATTTAGCACGCCAGCGAATATGCGAGTAAGTGGGAGATTTTATATTCCCTGCTTTGAGCAAAGTAGAATCGTCATCCTCCCAAATTGAGAGATCCATTTTATATTATACAACCCAAGTAGAGGAAGCCACGCGTCTTGTTTGGCACATCCCAAGCTTGTACATATATTGGTATTGGAGCTCTTTTGTTGTAATAATATGATATGCAGTGTGGATCATAGGCCCCAATAATGGGGGGATGCTTTGTGGATGGACTGCTGGCGATTATAATATAGTGGGTGCTCCTGTCGGCTAGACTCTTCTTTTGTGCTGATTTATATGTATTACTTATATGAGTGAGTGGGGTAAAAAGGGGCACTGCCACACAACATTTGTACGAGATGATGTAGTAACTGTGGGGCAGGGTGGCATCAAGCGGTGACATAATCATATGGATTTGACGGTTATTAGTGAATTGGCCCTTGTAAAATATATTGAACCTCAGCCCTTCACTGCTAACTTATCTTATGCTCTTCTCATTAGTATTGAATCCTGCACTAATGGATGTCATTGTGGTTCCACCAAATGAGTTGCTGTTATATACGTCGCTCGTACCTCTAATTTTTTAGTTGAGAGTATATATTGTATCTGGTCAGCGTGGGATCTATGAACGTAAGTATTCTAATTGCTCGTTGCCTATTTTAAGTGAAAGTGGACTTTCCATTAGTTATTGGTCGAATTCTCTCATTTTCATGATATTATCTTCCTACTAATATTAATTTTTCTTGTTTTAAATAGATGAAAGATCATTGGAGCCGTCATCGGCCCTTTATATCAGGCAGCCATACACCAATCCATGTGCACAGAGGTACGAATCCTAGACATTTATTAATATATATAGAGATTTAGAGAAGTCACCATAACTCGTGAATGAGAGGGCATGTACTAAAAAGTTCTCCACTATTAATTATTATTATTATTTGTTCTACAAATTTATTACCATAGTACATATTCAAAAATATAGTTCAACTTATTAAAACATTAGACATTTAAATTGTTAGAAACCACAACTCTGTGTAATGATATGATTTTGTCTACTTTGAGAATAAGTTCTCATGGCTTTACTTTTGATTTTCCCAAAATACTTCATACCAATGGAGATATATTCCTTACTTATAAACTCATGATCAACCCCTTAATTAGCCGATATGAGACTTTTCTCCCAACAATCCTCCCCTCGAACAAAGTACGTTATAAAGCTTCTCCTGAAGCCTATGAAATCCTCGAACAACCTCCCCTTAATTGAGATTCGACTCCTTCTCTAGAGCCCTCAAACAAAATACATTTTTTCTTCAACACTTAGAGGCACTTTTGACTACACTTTCAAGGCTCACAATTTCTTTGTTCAACATTTGAAAATTTTATTGACATTGCTAAGTTAAGGGCATGACTTTGATACCATGTTAGAAACCACGACTCCCCACAATCGTATAATATTGTCAATTTTAAACATAAGCTCTCATGACTTTATTTTTTGTTTCTCCATAAAACCTCATACCCATGAAGATACATTCCTTACTAATCCACGATCAACCCCTAAATTAGCCGATGTGAGACTCTTCTCCTAACAATCCTCAACATAATTCTCCAACGATTCATTCCTATAAATGTTATTAATTCCTTTAATAATAAAATTATCTTCAAGTTGGTGAGGCAAATAATCTTTCTTGCAAGAATTAGAAATGACCGTTTGGTTTACAAAGTGAACTAACTCGTCAGCTTAACAATAAGAATGGAGGGCA

mRNA sequence

ATGATGAGCGCGAGGGATGAGGAATCAGAGAACTACGGAGATTGTTCGGCGCTGCTCACACATTTCCTTCGCCGTCTCTGGAATTACTGCAAGTTTCAGTCAGATGCAGGCCATACAAACTCACTTGATATGGATGCTCTAAGAGCTCTGTGGTATGCTGCTTATCCTGATCAAGAGCTTCAGGCGTGGTATCAGATCAATGGAAAGAAATGGGATGGCAGGGAAGAAACCCATCGACTGATTTTAGATGAAAGATCATTGGAGCCGTCATCGGCCCTTTATATCAGGCAGCCATACACCAATCCATGTGCACAGAGGTACGAATCCTAGACATTTATTAATATATATAGAGATTTAGAGAAGTCACCATAACTCGTGAATGAGAGGGCATGTACTAAAAAGTTCTCCACTATTAATTATTATTATTATTTGTTCTACAAATTTATTACCATAGTACATATTCAAAAATATAGTTCAACTTATTAAAACATTAGACATTTAAATTGTTAGAAACCACAACTCTGTGTAATGATATGATTTTGTCTACTTTGAGAATAAGTTCTCATGGCTTTACTTTTGATTTTCCCAAAATACTTCATACCAATGGAGATATATTCCTTACTTATAAACTCATGATCAACCCCTTAATTAGCCGATATGAGACTTTTCTCCCAACAATCCTCCCCTCGAACAAAGTACGTTATAAAGCTTCTCCTGAAGCCTATGAAATCCTCGAACAACCTCCCCTTAATTGAGATTCGACTCCTTCTCTAGAGCCCTCAAACAAAATACATTTTTTCTTCAACACTTAGAGGCACTTTTGACTACACTTTCAAGGCTCACAATTTCTTTGTTCAACATTTGAAAATTTTATTGACATTGCTAAGTTAAGGGCATGACTTTGATACCATGTTAGAAACCACGACTCCCCACAATCGTATAATATTGTCAATTTTAAACATAAGCTCTCATGACTTTATTTTTTGTTTCTCCATAAAACCTCATACCCATGAAGATACATTCCTTACTAATCCACGATCAACCCCTAAATTAGCCGATGTGAGACTCTTCTCCTAACAATCCTCAACATAATTCTCCAACGATTCATTCCTATAAATGTTATTAATTCCTTTAATAATAAAATTATCTTCAAGTTGGTGAGGCAAATAATCTTTCTTGCAAGAATTAGAAATGACCGTTTGGTTTACAAAGTGAACTAACTCGTCAGCTTAACAATAAGAATGGAGGGCA

Coding sequence (CDS)

ATGATGAGCGCGAGGGATGAGGAATCAGAGAACTACGGAGATTGTTCGGCGCTGCTCACACATTTCCTTCGCCGTCTCTGGAATTACTGCAAGTTTCAGTCAGATGCAGGCCATACAAACTCACTTGATATGGATGCTCTAAGAGCTCTGTGGTATGCTGCTTATCCTGATCAAGAGCTTCAGGCGTGGTATCAGATCAATGGAAAGAAATGGGATGGCAGGGAAGAAACCCATCGACTGATTTTAGATGAAAGATCATTGGAGCCGTCATCGGCCCTTTATATCAGGCAGCCATACACCAATCCATGTGCACAGAGGTACGAATCCTAG

Protein sequence

MMSARDEESENYGDCSALLTHFLRRLWNYCKFQSDAGHTNSLDMDALRALWYAAYPDQELQAWYQINGKKWDGREETHRLILDERSLEPSSALYIRQPYTNPCAQRYES

Homology

[Close]

BLAST of Cp4.1LG09g06060 vs. NCBI nr
Match: KAG6573643.1 (hypothetical protein SDJN03_27530, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 8.36e-17
Identity = 44/65 (67.69%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 20 THFLRRLWNYCKFQSDAGHT-NSLDMDALRALWYAAYPDQELQAWYQINGKKWDGREETH 79
          T  LRRL+        A HT  S  +DALR+LWYAAYPDQE QAWYQINGKK DG EETH
Sbjct: 7  TRELRRLFG-------AAHTFPSPSLDALRSLWYAAYPDQERQAWYQINGKKLDGSEETH 64

Query: 80 RLILD 83
          RLILD
Sbjct: 67 RLILD 64

[Close]

BLAST of Cp4.1LG09g06060 vs. NCBI nr
Match: KAG7012734.1 (hypothetical protein SDJN02_25487, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.9 bits (141), Expect = 1.84e-08
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 55 YPDQELQAWYQINGKKWDGREETHRLILD 83
          YPDQE QAWYQINGKK DG EETHRLILD
Sbjct: 1  YPDQERQAWYQINGKKLDGSEETHRLILD 29

[Close]

BLAST of Cp4.1LG09g06060 vs. NCBI nr
Match: BBN68484.1 (ELMO/CED-12 family protein [Prunus dulcis])

HSP 1 Score: 56.6 bits (135), Expect = 3.68e-07
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 23 LRRLWNYCKFQSDAGHTNSLDMDALRALWYAAYPDQELQAWYQINGKKWDGREETHRLI 81
          +RRL    K   DA   +    +ALRALWYA YP QELQ       K+WDGREE H LI
Sbjct: 7  MRRLKRRMKVYFDAARADH--QEALRALWYATYPGQELQGLISDQWKRWDGREEIHLLI 63

[Close]

BLAST of Cp4.1LG09g06060 vs. ExPASy TrEMBL
Match: A0A5H2XMX5 (ELMO/CED-12 family protein OS=Prunus dulcis OX=3755 GN=Prudu_445S000700 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.78e-07
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 23 LRRLWNYCKFQSDAGHTNSLDMDALRALWYAAYPDQELQAWYQINGKKWDGREETHRLI 81
          +RRL    K   DA   +    +ALRALWYA YP QELQ       K+WDGREE H LI
Sbjct: 7  MRRLKRRMKVYFDAARADH--QEALRALWYATYPGQELQGLISDQWKRWDGREEIHLLI 63

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g06060 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g06060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573643.1	8.36e-17	67.69	hypothetical protein SDJN03_27530, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012734.1	1.84e-08	89.66	hypothetical protein SDJN02_25487, partial [Cucurbita argyrosperma subsp. argyro...	[more]
BBN68484.1	3.68e-07	50.85	ELMO/CED-12 family protein [Prunus dulcis]	[more]

BLAST of Cp4.1LG09g06060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5H2XMX5	1.78e-07	50.85	ELMO/CED-12 family protein OS=Prunus dulcis OX=3755 GN=Prudu_445S000700 PE=4 SV=...	[more]

BLAST of Cp4.1LG09g06060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g06060.1	Cp4.1LG09g06060.1	mRNA