Cp4.1LG09g05620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g05620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ferredoxin
Location	Cp4.1LG09: 4590420 .. 4590890 (+)
RNA-Seq Expression	Cp4.1LG09g05620
Synteny	Cp4.1LG09g05620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACACGTCGGCGCCATGTAAAAACCAATTCAGAAGCAGCATTATCAAGTGTCCATCTTCGATCGGATCCACAAGCAACATATCGAAATCATTCGGCTTGAAATCATCGTCCTCATCCAGAACCACTGCAATGGCAGTCTACAAGATCAAACTTATCGAACCATGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGCTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAAGAAGGAGAACTGATCTGA

mRNA sequence

ATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACACGTCGGCGCCATGTAAAAACCAATTCAGAAGCAGCATTATCAAGTGTCCATCTTCGATCGGATCCACAAGCAACATATCGAAATCATTCGGCTTGAAATCATCGTCCTCATCCAGAACCACTGCAATGGCAGTCTACAAGATCAAACTTATCGAACCATGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGCTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAAGAAGGAGAACTGATCTGA

Coding sequence (CDS)

ATGTCAACCATGTCAACTGCAAAGCTTCCTTCCCGCACCATGTTCAACACGTCGGCGCCATGTAAAAACCAATTCAGAAGCAGCATTATCAAGTGTCCATCTTCGATCGGATCCACAAGCAACATATCGAAATCATTCGGCTTGAAATCATCGTCCTCATCCAGAACCACTGCAATGGCAGTCTACAAGATCAAACTTATCGAACCATGTGGGAAAGAGCACGAGTTTGAGGCATCTGATGATACCTACATTCTTGATGCAGCTGAAGAAGCAGGAATTGACCTTCCATATTCTTGCAGGGCAGGGGCGTGCTCTACGTGCGCTGGGAAATTCGTTTCGGGTTCAGTCGATCAGTCGGACGGGTCGTTCCTGGACGATAGTCAAATGGAAGAGGGGTATTTGTTAACCTGTATTTCACACCCAACTTCAGACTGTGTGATTCTCACACACAAAGAAGGAGAACTGATCTGA

Protein sequence

MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI

Homology

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-44
Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 24  QFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMAVYKIKLIEPCGKEHEFEASDDTY 83
           Q   + +K PSS+   S ++K   LK+S     +AMAVYK+KL+ P G+EHEF+A DD Y
Sbjct: 20  QASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAY 79

Query: 84  ILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTS 143
           ILDAAE AG++LPYSCRAGACSTCAGK  SGSVDQSDGSFLDD Q EEGY+LTC+S+P S
Sbjct: 80  ILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKS 139

Query: 144 DCVILTHKEGEL 156
           DCVI THKEG+L
Sbjct: 140 DCVIHTHKEGDL 151

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.6e-44
Identity = 94/156 (60.26%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   MSTAKLPSRTMFNTSAPCKNQFRSSIIKCPS---SIGSTSNISKSFGLK-SSSSSRTTAM 63
           M+T ++ S +M  T A  ++Q  + +I   S   S+GST  +S+SFGLK S++S   T  
Sbjct: 1   MATVRISSTSM--TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMS 60

Query: 64  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 123
           AVYK+KL+ P G+E EFE  DD YILDAAEEAG+DLPYSCRAGACSTCAG+ VSG+VDQS
Sbjct: 61  AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQS 120

Query: 124 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFL+DS +E+GY+LTC+++P SDCVI THKE EL
Sbjct: 121 DGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-36
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 40  SNISKSFGLKSSSS--SRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPY 99
           +N    FGLKSS++   R TAMA YK+K I P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 100 SCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKE 153
           SCRAG+CS+CAGK VSGS+DQSD SFLDD QM EGY+LTC+++PTSD VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-36
Identity = 85/152 (55.92%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 5   STAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSS-SRTTAMAVYK 64
           +TA L   TM    AP      +++   P+++G        FGLKSS+S  R TAMA YK
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAAL---PTNVGRA-----LFGLKSSASRGRVTAMAAYK 63

Query: 65  IKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSF 124
           + L+ P GK+ E E  DD YILDAAEEAGIDLPYSCRAG+CS+CAGK  SGSV+Q DGSF
Sbjct: 64  VTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSF 123

Query: 125 LDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           LDD Q++EG++LTC+++PT D  I THKE EL
Sbjct: 124 LDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 60  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 119
           AVYK+KLI P G+E+EFE  DD +ILDAAEEAG+DLPYSCRAGACSTCAG+ V G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 120 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           +GSFL+D   E+G++LTC+++P SDCVI THKE EL
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: XP_023541284.1 (ferredoxin-3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309 bits (791), Expect = 2.53e-105
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA
Sbjct: 41  MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 100

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 101 VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 160

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 161 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 196

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: XP_022944833.1 (uncharacterized protein LOC111449248 isoform X2 [Cucurbita moschata])

HSP 1 Score: 306 bits (783), Expect = 1.05e-104
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFNTSAPCKNQFRS+IIKCPSSIGSTSNISKSFGLKSS SSRTTAMA
Sbjct: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: XP_022944832.1 (uncharacterized protein LOC111449248 isoform X1 [Cucurbita moschata])

HSP 1 Score: 306 bits (783), Expect = 9.27e-104
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFNTSAPCKNQFRS+IIKCPSSIGSTSNISKSFGLKSS SSRTTAMA
Sbjct: 64  MSTMSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAMA 123

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 124 VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 183

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 184 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 219

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: XP_022967109.1 (uncharacterized protein LOC111466612 [Cucurbita maxima] >XP_022967110.1 uncharacterized protein LOC111466612 [Cucurbita maxima])

HSP 1 Score: 302 bits (774), Expect = 2.47e-103
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFN SAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKS  SSRTTAMA
Sbjct: 1   MSTMSTAKLPSRTMFNRSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSLHSSRTTAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156

[Close]

BLAST of Cp4.1LG09g05620 vs. NCBI nr
Match: KAG6573622.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301 bits (771), Expect = 6.38e-103
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 4   MSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMAVYK 63
           MSTAKLPSRTMFNTSAPCKNQFRS+IIKCPSSIGSTSNISKSFGLKSS SSRTTAMAVYK
Sbjct: 1   MSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAMAVYK 60

Query: 64  IKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSF 123
           IKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSF
Sbjct: 61  IKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSF 120

Query: 124 LDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           LDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 121 LDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 153

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy TrEMBL
Match: A0A6J1FZ54 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1)

HSP 1 Score: 306 bits (783), Expect = 5.07e-105
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFNTSAPCKNQFRS+IIKCPSSIGSTSNISKSFGLKSS SSRTTAMA
Sbjct: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy TrEMBL
Match: A0A6J1FZ83 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1)

HSP 1 Score: 306 bits (783), Expect = 4.49e-104
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFNTSAPCKNQFRS+IIKCPSSIGSTSNISKSFGLKSS SSRTTAMA
Sbjct: 64  MSTMSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAMA 123

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 124 VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 183

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 184 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 219

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy TrEMBL
Match: A0A6J1HTH8 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111466612 PE=3 SV=1)

HSP 1 Score: 302 bits (774), Expect = 1.19e-103
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLPSRTMFN SAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKS  SSRTTAMA
Sbjct: 1   MSTMSTAKLPSRTMFNRSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSLHSSRTTAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD
Sbjct: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI
Sbjct: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy TrEMBL
Match: A0A6J1CLH4 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111012698 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 1.62e-87
Identity = 132/156 (84.62%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTA LPSR  F  +APCKN++R +IIKCPSSIGS SNIS+SFGLKSS S RT+AMA
Sbjct: 1   MSTMSTATLPSR--FTLNAPCKNRYRITIIKCPSSIGSASNISRSFGLKSSPSFRTSAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
           VYKIKL+EPCGKEHEFEASDDTYILDAAEEAG+DLPYSCRAGACSTCAGK VSGSVDQSD
Sbjct: 61  VYKIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDD+QM EGYLLTC+S PT+DCVI THKEGELI
Sbjct: 121 GSFLDDTQMAEGYLLTCVSLPTADCVIHTHKEGELI 154

[Close]

BLAST of Cp4.1LG09g05620 vs. ExPASy TrEMBL
Match: A0A0A0LY90 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_1G163160 PE=3 SV=1)

HSP 1 Score: 246 bits (627), Expect = 2.87e-81
Identity = 127/156 (81.41%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 1   MSTMSTAKLPSRTMFNTSAPCKNQFRSSIIKCPSSIGSTSNISKSFGLKSSSSSRTTAMA 60
           MSTMSTAKLP+  M+NT +  KNQ  S+IIKCPSSIGST NI KSFGL S  S R  AMA
Sbjct: 1   MSTMSTAKLPTHFMYNTQS--KNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMA 60

Query: 61  VYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSD 120
            +KIKL+EPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGK VSGSVDQSD
Sbjct: 61  AFKIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSD 120

Query: 121 GSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 156
           GSFLDD QM  GYLLTCIS PT+DCVI THKEGELI
Sbjct: 121 GSFLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-45
Identity = 94/156 (60.26%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 4   MSTAKLPSRTMFNTSAPCKNQFRSSIIKCPS---SIGSTSNISKSFGLK-SSSSSRTTAM 63
           M+T ++ S +M  T A  ++Q  + +I   S   S+GST  +S+SFGLK S++S   T  
Sbjct: 1   MATVRISSTSM--TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMS 60

Query: 64  AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 123
           AVYK+KL+ P G+E EFE  DD YILDAAEEAG+DLPYSCRAGACSTCAG+ VSG+VDQS
Sbjct: 61  AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQS 120

Query: 124 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGEL 156
           DGSFL+DS +E+GY+LTC+++P SDCVI THKE EL
Sbjct: 121 DGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 154.5 bits (389), Expect = 7.2e-38
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 40  SNISKSFGLKSSSS--SRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPY 99
           +N    FGLKSS++   R TAMA YK+K I P G E E E  +D Y+LDAAEEAG+DLPY
Sbjct: 31  ANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPY 90

Query: 100 SCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKE 153
           SCRAG+CS+CAGK VSGS+DQSD SFLDD QM EGY+LTC+++PTSD VI THKE
Sbjct: 91  SCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 76/120 (63.33%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 39  TSNISKSFGLKSSSS--SRTTAMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLP 98
           ++N    FGLKS ++   R TAMA YK+K I P G E E E  DD Y+LDAAEEAGIDLP
Sbjct: 30  SANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG-ELEVECDDDVYVLDAAEEAGIDLP 89

Query: 99  YSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 157
           YSCRAG+CS+CAGK VSGSVDQSD SFLDD Q+ EG++LTC ++PTSD  I THKE +++
Sbjct: 90  YSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 127.5 bits (319), Expect = 9.5e-30
Identity = 67/143 (46.85%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 25  FRSSIIKCP---------SSIGSTSNISKSFGLKSSSSS--RTTAMAVYKIKLIEPCGKE 84
           + S IIK P         + + +  N +  FGL SS  +  +  A    K+KLI P G+E
Sbjct: 6   YSSYIIKIPVISRISPSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEE 65

Query: 85  HEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGY 144
            E E ++D  IL++AE AG++LPYSCR+G C TC GK VSG VDQS GSFL++ Q+++GY
Sbjct: 66  QEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGY 125

Query: 145 LLTCISHPTSDCVILTHKEGELI 157
           +LTCI+ P  DCV+ THK+ +LI
Sbjct: 126 ILTCIALPLEDCVVYTHKQSDLI 148

[Close]

BLAST of Cp4.1LG09g05620 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 43  SKSFGLKSSSSSRTT-----------AMAVYKIKLIEPCGKEHEFEASDDTYILDAAEEA 102
           S SF L++++ S TT               YK+ ++E  GK  E E   D  IL  A ++
Sbjct: 23  SFSFPLRNATLSTTTNRRNFLTTGRIIARAYKV-VVEHDGKTTELEVEPDETILSKALDS 82

Query: 103 GIDLPYSCRAGACSTCAGKFVSGSVDQSDGSFLDDSQMEEGYLLTCISHPTSDCVILTHK 157
           G+D+PY C  G C TC  K V+G+VDQS G  L D  +E GY L C S+PTSDC I    
Sbjct: 83  GLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIP 142

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g05620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	3.0e-44	65.91	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	6.6e-44	60.26	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
O04090	1.0e-36	66.96	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
O04683	3.0e-36	55.92	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
P14937	1.1e-35	70.83	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]

BLAST of Cp4.1LG09g05620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541284.1	2.53e-105	100.00	ferredoxin-3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022944833.1	1.05e-104	98.72	uncharacterized protein LOC111449248 isoform X2 [Cucurbita moschata]	[more]
XP_022944832.1	9.27e-104	98.72	uncharacterized protein LOC111449248 isoform X1 [Cucurbita moschata]	[more]
XP_022967109.1	2.47e-103	98.08	uncharacterized protein LOC111466612 [Cucurbita maxima] >XP_022967110.1 uncharac...	[more]
KAG6573622.1	6.38e-103	98.69	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG09g05620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ54	5.07e-105	98.72	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1	[more]
A0A6J1FZ83	4.49e-104	98.72	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1	[more]
A0A6J1HTH8	1.19e-103	98.08	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111466612 PE=3 SV=1	[more]
A0A6J1CLH4	1.62e-87	84.62	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111012698 PE=3 SV=1	[more]
A0A0A0LY90	2.87e-81	81.41	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_1G163160 PE=3 SV=1	[more]

BLAST of Cp4.1LG09g05620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	4.7e-45	60.26	ferredoxin 3	[more]
AT1G10960.1	7.2e-38	66.96	ferredoxin 1	[more]
AT1G60950.1	1.8e-36	63.33	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	9.5e-30	46.85	ferredoxin 4	[more]
AT4G14890.1	1.1e-17	41.60	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 59..156 e-value: 1.7E-34 score: 119.6
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 60..155 e-value: 3.8E-46 score: 152.8
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 67..142 e-value: 6.3E-21 score: 74.1
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 62..153 score: 12.647208
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 67..147 e-value: 9.69715E-32 score: 107.096
None	No IPR available	PANTHER	PTHR43112:SF30	FERREDOXIN-3, CHLOROPLASTIC	coord: 4..155
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 4..155
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 99..107
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 56..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g05620.1	Cp4.1LG09g05620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding