Cp4.1LG09g05460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g05460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Poly(A)-specific ribonuclease
Location	Cp4.1LG09: 4767914 .. 4768759 (-)
RNA-Seq Expression	Cp4.1LG09g05460
Synteny	Cp4.1LG09g05460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTAGGCACCGATGATAGTCGATTCATTTGGGAGTTCAACTTCATGGATTTCGATCTAGCGCGTGACATATACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGCGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGGGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTGTTGTATGGATTGGAGGCATTCTGA

mRNA sequence

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTAGGCACCGATGATAGTCGATTCATTTGGGAGTTCAACTTCATGGATTTCGATCTAGCGCGTGACATATACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGCGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGGGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTGTTGTATGGATTGGAGGCATTCTGA

Coding sequence (CDS)

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTAGGCACCGATGATAGTCGATTCATTTGGGAGTTCAACTTCATGGATTTCGATCTAGCGCGTGACATATACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGCGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGGGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTGTTGTATGGATTGGAGGCATTCTGA

Protein sequence

MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

Homology

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BLAST of Cp4.1LG09g05460 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 7.6e-107
Identity = 186/270 (68.89%), Postives = 225/270 (83.33%), Query Frame = 0


Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++    A  + L R + +  Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIY---KADLDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.9e-105
Identity = 185/271 (68.27%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +       L  ++  D Y 
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD------LRFTNPDDLYT 75

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLL 132
           LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LL
Sbjct: 76  LLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELL 135

Query: 133 RRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPN 192
           RRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP 
Sbjct: 136 RRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPG 195

Query: 193 RLDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLL 252
            L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLL
Sbjct: 196 ALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLL 255

Query: 253 TWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           TWHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 TWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 7.9e-80
Identity = 149/266 (56.02%), Postives = 199/266 (74.81%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV   P   F    ++++  HY+
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTF----KTNTEYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR
Sbjct: 69  TLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N   GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP  
Sbjct: 129 QSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPET 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
              F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT 
Sbjct: 189 QTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 CTFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.8e-77
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV   P   F    +S++  HY+
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTF----KSNADYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FDL  DI+A DSI+LL+
Sbjct: 69  TLKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLK 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GID  +N ++GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+ 
Sbjct: 129 QSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDS 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT 
Sbjct: 189 QTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FFV   + K++GVLYGL
Sbjct: 249 CTFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.8e-74
Identity = 143/266 (53.76%), Postives = 189/266 (71.05%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F    + ++  +Y+
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVL-KPVATF----KYNNDLNYR 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF +F++  DIYA +SI+LLR
Sbjct: 69  TLKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP +
Sbjct: 129 QCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLK 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT 
Sbjct: 189 QADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTL 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
            +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 GSFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]

BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: XP_023541056.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 569 bits (1467), Expect = 7.77e-205
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281

[Close]

BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 560 bits (1443), Expect = 3.42e-201
Identity = 279/281 (99.29%), Postives = 279/281 (99.29%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           ALNRSSS DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  ALNRSSS-DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: XP_022967098.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 556 bits (1432), Expect = 1.62e-199
Identity = 276/281 (98.22%), Postives = 278/281 (98.93%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           +LNRSSS DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  SLNRSSS-DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQK LPNR+DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: KAG7012717.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 556 bits (1432), Expect = 1.62e-199
Identity = 277/281 (98.58%), Postives = 278/281 (98.93%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           ALNRSSS DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  ALNRSSS-DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: XP_038877224.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 489 bits (1260), Expect = 2.48e-173
Identity = 241/281 (85.77%), Postives = 262/281 (93.24%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MV HDLN N+ KSIKIREVWASNLESEFQLIRDLID FPCVSMDTEFPGIVF  P  PFN
Sbjct: 1   MVIHDLNINN-KSIKIREVWASNLESEFQLIRDLIDQFPCVSMDTEFPGIVFADPARPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
              +S  SDHY+LLKSNVDAL+LIQIGITLSDSDGNLPDLGTDD+RFIWEFNFMDFD+AR
Sbjct: 61  F--QSQPSDHYRLLKSNVDALHLIQIGITLSDSDGNLPDLGTDDTRFIWEFNFMDFDVAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           D++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL
Sbjct: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNNSVSWVTFHSAYDFGYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           +KILTQ+ LP+R+DEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGK
Sbjct: 181 VKILTQRRLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDT+FVQNE++KHAGVLYGLE F
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTYFVQNEMQKHAGVLYGLEVF 278

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy TrEMBL
Match: A0A6J1G223 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3 SV=1)

HSP 1 Score: 560 bits (1443), Expect = 1.65e-201
Identity = 279/281 (99.29%), Postives = 279/281 (99.29%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           ALNRSSS DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  ALNRSSS-DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy TrEMBL
Match: A0A6J1HU54 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 SV=1)

HSP 1 Score: 556 bits (1432), Expect = 7.87e-200
Identity = 276/281 (98.22%), Postives = 278/281 (98.93%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
           +LNRSSS DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR
Sbjct: 61  SLNRSSS-DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           DIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           IKILTQK LPNR+DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK
Sbjct: 181 IKILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy TrEMBL
Match: A0A6J1CN71 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=3 SV=1)

HSP 1 Score: 479 bits (1234), Expect = 1.10e-169
Identity = 237/279 (84.95%), Postives = 256/279 (91.76%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           MV  DL NN  K I+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG+VFT P  P++
Sbjct: 1   MVVQDLKNNS-KPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYH 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
             NR S  DHY+LLKSNVDALNLIQIGITLSDSDGNLPDLGT  SRFIWEFNFMDFD+AR
Sbjct: 61  RQNRPS--DHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           D++APDSI+LLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL
Sbjct: 121 DVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           +K+LT++SLP+RL+EFLGVLRV FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGK
Sbjct: 181 VKVLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 279
           CHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE 276

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy TrEMBL
Match: A0A0A0LYC8 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV=1)

HSP 1 Score: 455 bits (1171), Expect = 4.19e-160
Identity = 222/281 (79.00%), Postives = 249/281 (88.61%), Query Frame = 0


Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
               +  S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+AR
Sbjct: 61  P---NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           D++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL
Sbjct: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           +KILT + LP  L++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGK
Sbjct: 181 VKILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           CHQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]

BLAST of Cp4.1LG09g05460 vs. ExPASy TrEMBL
Match: A0A5A7T1W0 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001920 PE=3 SV=1)

HSP 1 Score: 452 bits (1164), Expect = 5.64e-159
Identity = 223/284 (78.52%), Postives = 249/284 (87.68%), Query Frame = 0


Query: 1   MVSHDLNNNH---YKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTA 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI DLID FPCVSMDTEFPG++F   T 
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFD 120
           P      +  S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD
Sbjct: 61  PKFP---NHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFD 120

Query: 121 LARDIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDF 180
           +ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF
Sbjct: 121 VARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDF 180

Query: 181 AYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRA 240
            YL+KILTQ+ LP  L+EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRA
Sbjct: 181 GYLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRA 240

Query: 241 VGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           VGKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 VGKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]

BLAST of Cp4.1LG09g05460 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 388.3 bits (996), Expect = 5.4e-108
Identity = 186/270 (68.89%), Postives = 225/270 (83.33%), Query Frame = 0


Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++    A  + L R + +  Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIY---KADLDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Cp4.1LG09g05460 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 383.6 bits (984), Expect = 1.3e-106
Identity = 185/271 (68.27%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +       L  ++  D Y 
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD------LRFTNPDDLYT 75

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLL 132
           LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LL
Sbjct: 76  LLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELL 135

Query: 133 RRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPN 192
           RRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP 
Sbjct: 136 RRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPG 195

Query: 193 RLDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLL 252
            L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLL
Sbjct: 196 ALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLL 255

Query: 253 TWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           TWHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 TWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Cp4.1LG09g05460 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 298.5 bits (763), Expect = 5.6e-81
Identity = 149/266 (56.02%), Postives = 199/266 (74.81%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV   P   F    ++++  HY+
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTF----KTNTEYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR
Sbjct: 69  TLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N   GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP  
Sbjct: 129 QSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPET 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
              F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT 
Sbjct: 189 QTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 CTFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]

BLAST of Cp4.1LG09g05460 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 290.0 bits (741), Expect = 2.0e-78
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV   P   F    +S++  HY+
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTF----KSNADYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FDL  DI+A DSI+LL+
Sbjct: 69  TLKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLK 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GID  +N ++GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+ 
Sbjct: 129 QSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDS 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT 
Sbjct: 189 QTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FFV   + K++GVLYGL
Sbjct: 249 CTFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]

BLAST of Cp4.1LG09g05460 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 290.0 bits (741), Expect = 2.0e-78
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 0


Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV   P   F    +S++  HY+
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTF----KSNADYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FDL  DI+A DSI+LL+
Sbjct: 69  TLKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLK 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GID  +N ++GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+ 
Sbjct: 129 QSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDS 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT 
Sbjct: 189 QTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FFV   + K++GVLYGL
Sbjct: 249 CTFRKLKENFFV-GPLHKYSGVLYGL 265

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g05460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	7.6e-107	68.89	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	1.9e-105	68.27	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	7.9e-80	56.02	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	2.8e-77	54.51	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	3.8e-74	53.76	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Cp4.1LG09g05460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541056.1	7.77e-205	100.00	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]	[more]
XP_022945861.1	3.42e-201	99.29	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 ...	[more]
XP_022967098.1	1.62e-199	98.22	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]
KAG7012717.1	1.62e-199	98.58	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_038877224.1	2.48e-173	85.77	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]

BLAST of Cp4.1LG09g05460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G223	1.65e-201	99.29	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3...	[more]
A0A6J1HU54	7.87e-200	98.22	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 S...	[more]
A0A6J1CN71	1.10e-169	84.95	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=...	[more]
A0A0A0LYC8	4.19e-160	79.00	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV...	[more]
A0A5A7T1W0	5.64e-159	78.52	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Cp4.1LG09g05460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	5.4e-108	68.89	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	1.3e-106	68.27	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	5.6e-81	56.02	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	2.0e-78	54.51	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.0e-78	54.51	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..280 e-value: 1.1E-97 score: 328.4
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 169..251 e-value: 2.3E-6 score: 27.1
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 19..146 e-value: 2.8E-10 score: 40.0
None	No IPR available	PANTHER	PTHR10797:SF48	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 9..281
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 9..281
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 16..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g05460.1	Cp4.1LG09g05460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity