Cp4.1LG09g04490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g04490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionGlutamate receptor 2 plant
LocationCp4.1LG09: 2921565 .. 2921780 (+)
RNA-Seq ExpressionCp4.1LG09g04490
SyntenyCp4.1LG09g04490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCGACGCCGACATCGGAGGGAGAAAAGGCGAGGAGTAGCAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAGCGCAATCGGCGGCGGAGGTAGCGGCGGGAGAACCAACGGCAGAACGACCATGGAAACCGCGACGGCGGCGAGGACGAGAACGGACACTAAATTGAAGCAACGAACCATAGTAATCGTCGGACGATCGGCGATTTGA

mRNA sequence

ATGTTTCCGACGCCGACATCGGAGGGAGAAAAGGCGAGGAGTAGCAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAGCGCAATCGGCGGCGGAGGTAGCGGCGGGAGAACCAACGGCAGAACGACCATGGAAACCGCGACGGCGGCGAGGACGAGAACGGACACTAAATTGAAGCAACGAACCATAGTAATCGTCGGACGATCGGCGATTTGA

Coding sequence (CDS)

ATGTTTCCGACGCCGACATCGGAGGGAGAAAAGGCGAGGAGTAGCAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAGCGCAATCGGCGGCGGAGGTAGCGGCGGGAGAACCAACGGCAGAACGACCATGGAAACCGCGACGGCGGCGAGGACGAGAACGGACACTAAATTGAAGCAACGAACCATAGTAATCGTCGGACGATCGGCGATTTGA

Protein sequence

MFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQRTIVIVGRSAI
Homology
BLAST of Cp4.1LG09g04490 vs. NCBI nr
Match: KAG6573795.1 (hypothetical protein SDJN03_27682, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (326), Expect = 1.69e-37
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQ 60
          MFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQ
Sbjct: 17 MFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQ 76

Query: 61 RTIVIVGRSAI 71
          RTIVIVGRSAI
Sbjct: 77 RTIVIVGRSAI 87

BLAST of Cp4.1LG09g04490 vs. NCBI nr
Match: KAE8648868.1 (hypothetical protein Csa_008159, partial [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.64e-25
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 1  MFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQ 60
          M PT TSEGEKAR  SAAMIPTGKKRS  GGGG GGRTNGRTTMETATAAR RTDTKLKQ
Sbjct: 29 MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ 88

Query: 61 RTI 63
          RTI
Sbjct: 89 RTI 91

BLAST of Cp4.1LG09g04490 vs. NCBI nr
Match: PON98760.1 (hypothetical protein TorRG33x02_053750 [Trema orientale])

HSP 1 Score: 63.2 bits (152), Expect = 4.42e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 8  EGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQRTI 63
          EGEKA + SAAMIPTGKK S  GGGG GG+ NG+ T++ A AA TRT+ KL+ R I
Sbjct: 16 EGEKASNMSAAMIPTGKKSSINGGGGRGGKINGKITIDVARAASTRTEPKLRHRLI 71

BLAST of Cp4.1LG09g04490 vs. NCBI nr
Match: KAG5066285.1 (hypothetical protein JHK86_010016 [Glycine max])

HSP 1 Score: 60.5 bits (145), Expect = 3.81e-10
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 16 SAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQR 61
          SAAMIPTGKKR   GGGGSGG  NG TT++ A+AARTRT+ K KQR
Sbjct: 2  SAAMIPTGKKRRTSGGGGSGGSINGSTTIDAASAARTRTEPKPKQR 47

BLAST of Cp4.1LG09g04490 vs. NCBI nr
Match: KAG6781627.1 (hypothetical protein POTOM_014538 [Populus tomentosa])

HSP 1 Score: 58.9 bits (141), Expect = 6.13e-09
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 7   SEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQRTIVI 65
           SEGEKA++  AA+IPTGK RS  GGGGSGG  NG T ++ A A    T   LK RTIV+
Sbjct: 56  SEGEKAKNIRAAIIPTGKNRSISGGGGSGGNNNGNTAIDAAKAVNKTTLAVLKHRTIVL 114

BLAST of Cp4.1LG09g04490 vs. ExPASy TrEMBL
Match: A0A0A0KWY2 (Glutamate receptor 2 plant OS=Cucumis sativus OX=3659 GN=Csa_5G623890 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.86e-26
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 1  MFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQ 60
          M PT TSEGEKAR  SAAMIPTGKKRS  GGGG GGRTNGRTTMETATAAR RTDTKLKQ
Sbjct: 1  MLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQ 60

Query: 61 RTI 63
          RTI
Sbjct: 61 RTI 63

BLAST of Cp4.1LG09g04490 vs. ExPASy TrEMBL
Match: A0A2P5FLV3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_053750 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.14e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 8  EGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQRTI 63
          EGEKA + SAAMIPTGKK S  GGGG GG+ NG+ T++ A AA TRT+ KL+ R I
Sbjct: 16 EGEKASNMSAAMIPTGKKSSINGGGGRGGKINGKITIDVARAASTRTEPKLRHRLI 71

BLAST of Cp4.1LG09g04490 vs. ExPASy TrEMBL
Match: A0A540KIX5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_040301 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.04e-08
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 9  GEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQRTIVI 65
          GEKAR++ AA++PTGK +S  GGGGSGG   GRTTM  A  A T TD KL   T+++
Sbjct: 7  GEKARNTRAAIMPTGKNKSMNGGGGSGGSIKGRTTMHNARTASTSTDPKLIHCTMIL 63

BLAST of Cp4.1LG09g04490 vs. ExPASy TrEMBL
Match: B9RG81 (Glutamate receptor 2 plant, putative OS=Ricinus communis OX=3988 GN=RCOM_1452030 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.08e-08
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 2   FPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQR 61
           FP   S G+KA++  AA+IPTGK RS+ GGGGSGG + G TT++ A  A T T TK K R
Sbjct: 931 FPA-VSAGDKAKNIKAAIIPTGKNRSSKGGGGSGGSSKGNTTIDAARTASTATLTKPKHR 990

Query: 62  TIVI 65
           TIV+
Sbjct: 991 TIVL 993

BLAST of Cp4.1LG09g04490 vs. ExPASy TrEMBL
Match: A0A498JFA5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015873 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.41e-08
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 9  GEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMETATAARTRTDTKLKQRTIV 64
          GEKAR+  AA++PTGK +S  GGGGSGG  NGRTT   A  A TR D KL   TI+
Sbjct: 11 GEKARNKRAAIMPTGKNKSINGGGGSGGSINGRTTKNNARHASTRADPKLIHCTII 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573795.11.69e-37100.00hypothetical protein SDJN03_27682, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8648868.12.64e-2587.30hypothetical protein Csa_008159, partial [Cucumis sativus][more]
PON98760.14.42e-1162.50hypothetical protein TorRG33x02_053750 [Trema orientale][more]
KAG5066285.13.81e-1071.74hypothetical protein JHK86_010016 [Glycine max][more]
KAG6781627.16.13e-0957.63hypothetical protein POTOM_014538 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
A0A0A0KWY25.86e-2687.30Glutamate receptor 2 plant OS=Cucumis sativus OX=3659 GN=Csa_5G623890 PE=4 SV=1[more]
A0A2P5FLV32.14e-1162.50Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_053750 PE=4 SV... [more]
A0A540KIX51.04e-0856.14Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_040301 PE=4 SV=1[more]
B9RG811.08e-0856.25Glutamate receptor 2 plant, putative OS=Ricinus communis OX=3988 GN=RCOM_1452030... [more]
A0A498JFA51.41e-0858.93Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015873 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g04490.1Cp4.1LG09g04490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005886 plasma membrane
molecular_function GO:0015276 ligand-gated ion channel activity
molecular_function GO:0038023 signaling receptor activity