Cp4.1LG09g04100 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g04100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionglycine-rich RNA-binding protein RZ1C-like
LocationCp4.1LG09: 2548124 .. 2553336 (-)
RNA-Seq ExpressionCp4.1LG09g04100
SyntenyCp4.1LG09g04100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGCTCATTCTTTGAGAATATTTCACACTACACAGCACGAACAAGGTATTCCCCTTCTCTATCTTCATAACTTCCTTCAAATTCATCGAATCAATTGTTATTTAAGGTAGGAAGCACTTGATGAATGTTGTTTCTCATCGATTTCCGTTCAACTTTGTTCTTGGATTTCCCTAATTACTCTGGATTTTGTTGTGCAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGGTTACCCTTTGTGATTTACTTTTTGATTTTTGGTTTGATCTGTGTGGCTGGAAATCGAAGAAACTGAGCACGTTGGAATGAGTAATTAATCTGTTTCTGATATGAGAAGGAAATTGAGGAGATTTTGGATTAATTCGGTTTCATTTCAGTGTTATTGATCTTATGGAAAATATAATTTCTGAATTTCCACTCCCTTCCCTCTAAATAACCTTGCCCTGTAAGATTAACTATTACTTTCAGCTTCTTTTTTTTTAACCTTTAAGTTGTCTCTGTCTTCTTCTCTTTCTGATGAATTTTTTTTCCCCTTGTGAATGAGGATGCTGTTAATGAAATTTTTGGGAAGCGGTTTTACTGTTCATGAGAAGTTGAATGCATCGAGATGCTGAAGGTCATAGGGTTGTACGTTGCTTAAGCATTATCTGTTTAAGATCTGCTGGTTAAGAAAAAGTACTATCGTCTGGAAATTTGGAATATGGTTGGCTGCAAACTCAATCTTGTTCCCTAGCTGATTGGGGTTTGGTGGGATTTTAGTTTGCGAACTCAGCGACTAACTTGTTCTGTGGGATAAAAGTACTCGTCATTCTTTTGCGACAGATAAATGATTTAATACCAGAGTAACTATTAACAAGTCATGTGCTGATACCTGCTCGAGCAGACCTTCCTGTCTTATTGTTATTTGATGCTTTTGAAGAGGAAACTGAAGTCACTAAAATGTCTCGTGTATTCGAAAAATAGAATGTTCTAGTATTTGCTCGGAGAACTTTATCTTTCTCTGGATGATTATTAAACCTTCCATCTTATCCTTGGCTTACCCTACTTTCCAATGGTATGACTAAAATTTAACGATGAAAGTTATGTGGTTGCATGAGATGATGTACCGGGGCAGATGATCTGGGCTAGATTACCATATTGACTCAGATAATTGGTTTGCTAAGTCATCTAATCACAGAAAATATCTGTAGACATATGTCATTGGATGCAAAATTTTGTTGTACAAAGATTGTTTCATACTACTAGCTGCTTTTGTAATGTTCTCCTCGTTTCCCTATCCATTACTGTAATCATTAGCAGAGTGAGAGATAGATGGCTTTTCATTTGCTAGTTTCACTGGTGTTGAGAGTTGTCAGTGTTCTAAGATGAAGAATACGTTGAATGGGTGCCCCCTTTTTGGCTAAGATTTATGATAATGTACAAGGTGCAGTGTTTGGAGATCAATGGCCATTTTATCCTTTTGAGTAGGCACCGCTTCTTTGAATTCATTTTGCTGAGGTAAAGTCAGTTCCCTATTTGTCCAGGCATAATCGGAAAGTTGTTCGTACTGGTTTCTGTTCAGCAGTTAATGTGGCTAGAAATTGTACTAGCAATTCCAGGCTTAGCTGCTCAGGTATTTTCCAAAGAATTGGCCATACTGCATTTGTAGTCTTTAGTTTGACATATTTCCTTGTACAATGACAGCTAAATTGTGAATGTCAGTTTGAGTGCCTTTTTTGATCGGTTGTTGTCATCTCTGGTGAAAATGTTAAGATACTATACAGTGGACATGGAGAATGGACGTTGACGTGGTTATTATTGCCATTTGTACCTTCCAGATCTCTAAAGGCCTCTGATGCTGGAGTTCTTTCTGTTTGACCAAGCATTATGGATATCTATTTGTTGGGTATAGACTGCAGCAAAGCAATTGGATCTGAAGCTAAATTTGAGTGTCTTTAGGTGCAGTGTTGCAGGTTGGGTTTTTTATGAGTTATTTAGAGGAATGGATTTAGGCTGTGGCAACCTGAGAAATTATGGAGCTTTAGTTTTTCATCCATTGGTTTTCAACCTTTTCCCGTTGTTTGAAGTTGTTCCTCAAGATCGGTCCAGAATTCTGCTATTTTGTTTTCCTTTTTTGTGGTGTGCTAGTTCCCTCATTTTATACTCGTTGACAGTATTTTGTGTTATCAGAGTTTGAATTCCTCGATTATTGATTCTATTTAAACTTAAGAGGGGTTGAATATGTACCTAGTTAAGTACGGTTGCCATGCAAGCTGTTGTCGTCATCAAGTTTTCTAGTACATCCTCTTGTCTACAAACTGCTGACGGGATCTCAATTACAGAATGTGCTGGCATCTCCAACTTGCCTATGTCTCCTAGAGCATTCATCTTGGAAGATGTTGCTTAAGGATTCATCTTTCAGATTTATTCCACCATCTATTTCAGATCTCATCCCAATATGGTATTGATAGCAAGATGGCTATAAAATTCTTGTGTTTCCCTTGTGTATTATTTGTTGAGGTTAACAAATCCCTTTGTTGGAGTAATACACATATCCAGTGAAGTGATTGTACTTGGTTTTTTTTAGTCAACGTTGGATTTGAGTGCCATTTTGGATGCCTGACTGCACAGAACCCATGTAGCAATTTTTTTTGTGGAGTTGTTTCTTTTGAATAAAAGGGGACTAGAGGTCTAAGATACTCCCACTTCAGAAGATAGAGATAAAGACATGCAGGTTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAACAAGTAAGTTGTCAGACTGTTTAAAATATTTTATGCTGTTATTATCAATTACTATAAGTTTAAACTTTGAACGATTTCTCTTTTAGATGTTGTACTTATTGTGCATACAGCATGTGATAGGCCGAATGTCATCACCAGCTTGTACCTGTAACTTATCTGTTACCATATTTGCTGAATGATAGTTTAATGGAGTTTTAACCTCTAACTTGTTGATCATGGCAACTGTTTGGTATTGATTTTATACCTCTTTACAATGTCACAAATGTATTTGTGGGCTTCAAGGCCAAGATTGGGTCTACTTTCCATTGCTCTTAGATTCACCTCGTTTTCAGTGACTCCAACATTCTGAGTGTTGTCACATGGGATCTTAAATACCAAAACAAAATCACCTTATATTGGTGGTTAGGGCTTAGATTTCATCATGAAACATTTTATCTTTGAATATTGAGGAGATAGGAATCCTGGGCTATTTATTTATATTTCATTATGATGTTCTTCTTCGTCTCTTGATTAATGCCAGGTTTTGTTATGTTAGACAAATTTTCTTCATAATCTAGTTTCAAACTATGCTGATGGCTTGTAGGTTTGAAGTTGTGACCTGCATTATTAGCATGAGATGTACTTTACTAGCTCTGATTTAAGTTCTATGGGCTGTTTTATTGACTGGCGTAAACTTCCTCTTTGGCGTTCCTGTAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCATGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGAGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGAAGTCGCGATCGCTATGTTAGTGACAGGTACTGACTGATATTTCTATGGATTTGAATTTTATTTTCTGTGTATAAAGTATGTTTGGGAATGGAAATGGTTATTTTTCTAGTCTTAAAATTTATCCTTTTAAAGTAATTATCACTAGAATACGATAAATTAACAGAAGAGTGATCCAATATCCTTTGTTTTGCTGAGTTAATCACATGACTTCTCAATTAATTCCTTGCAGCATTATACTTGATCAATCCTCTCATCCCTATAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGAATGTTGACTGTTAGCATAATATCAGTTTTATCTGGTAAGTACTACACGCACGATGTCGTCGAACTTTTAGTCATCTAGGATATAGTTACTGTACCATGGCCTGCCAGCAGATCGCTGCTGTTTCATCTTGCTTTCATGTATCTGATAATGGAAAGAGAACTGATTTAAGTCGACCCTGAAATGTTGAGCCGAATCTTCGAGGACTCGAAGCTCGTTCGATTCATAATCCGTTAATGAATTAGGAAATAAAAGTGTAGAAGTCAGAGGGCACCCTACATGAAAGGGGCATGAATGGCAGACCAGAAGTCTCCTCTCAGTTAAGAGTGGAAAGGTAAGAGAGGCCATTAATGGAAGAAAAATGGTATGGTTTGGCCCACAACTATTGGAATTGTTGACTTGCCTTTAATCCATCCCCACTGTCTTGACATGTACTTGCAATGGCACTATTTTCGTCGGCTCTTGTTCATGATTTACTTGACTTTAGCTTTTGTGGAAAAATTTGAGAAGAAAGTGTAGTTTTTGATTGGTTTGACTATAAAACCCACTTGCTGCAAATTGGTGTCCTCCCATCCCCTTTTTGTTTCTTTTATTAACAAATAAAGCAAAGTTAATAATATA

mRNA sequence

CTAGGGTTCTTCAGGAATCTCTAGAAGGAAACGAGGGCTCATTCTTTGAGAATATTTCACACTACACAGCACGAACAAGGAGGAGTTTTCTGAAATACGGTGTTGATATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCATGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGAGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGAAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGAATGTTGACTGTTAGCATAATATCAGTTTTATCTGGTAAGTACTACACGCACGATGTCGTCGAACTTTTAGTCATCTAGGATATAGTTACTGTACCATGGCCTGCCAGCAGATCGCTGCTGTTTCATCTTGCTTTCATGTATCTGATAATGGAAAGAGAACTGATTTAAGTCGACCCTGAAATGTTGAGCCGAATCTTCGAGGACTCGAAGCTCGTTCGATTCATAATCCGTTAATGAATTAGGAAATAAAAGTGTAGAAGTCAGAGGGCACCCTACATGAAAGGGGCATGAATGGCAGACCAGAAGTCTCCTCTCAGTTAAGAGTGGAAAGGTAAGAGAGGCCATTAATGGAAGAAAAATGGTATGGTTTGGCCCACAACTATTGGAATTGTTGACTTGCCTTTAATCCATCCCCACTGTCTTGACATGTACTTGCAATGGCACTATTTTCGTCGGCTCTTGTTCATGATTTACTTGACTTTAGCTTTTGTGGAAAAATTTGAGAAGAAAGTGTAGTTTTTGATTGGTTTGACTATAAAACCCACTTGCTGCAAATTGGTGTCCTCCCATCCCCTTTTTGTTTCTTTTATTAACAAATAAAGCAAAGTTAATAATATA

Coding sequence (CDS)

ATGGCTGGGAGAGATGAGTACCGAATATTTGTGGGTGGGTTATCGTGGGAAATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGAAAGATTATCGATTCTCAGATCATGTTGGAAAAAAATACAGGGCGCCCACGTGGCTTTGGGTTTATCACGTTTTCAGATCGACGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAGGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATGGACCATGGTTACAGGGGGGGAGGCTACTCAAGTGGTGGCAGGGATAGCAGCTATGGTGGTGGAGGAGGAGATAGATCTGCTAGGCAAGATGAATGCTTCAAATGTGGACGTCCTGGACACTGGGCCAGAGATTGTCCTGTGGGCGGTGGTCGAGGAAGGGGAGGAGACTCATTTCTTTCACGTCCTCGACTTGGGGATAGCGATTATGGGGATCGCTTTGCTGGAGATAATAATCGTTATGTGGATGATCGTTATGAAGGAGGTGGACGCCTTGGAGATAGAGATCGTTTTGATAGCAGCAGGGACAAATATGGAAGTCGCGATCGCTATGTTAGTGACAGGTACCCACCTAGCGGAGACCGCTTTGGAAGCAGTAGGTACAACAACGACTCTGGTCGATTTCCCGTAAACAGCTTTGGTAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTACGAAAGCAGCGGTCCAGCACGCAACGAGGGAAGAAGCTACAGGAACAGACCAGCTCCTTACGATCGCCCTAGCAGAGCAGCAGGGAGGCCATCATCATTTGATCGTTATTGA

Protein sequence

MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Homology
[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-73
Identity = 171/311 (54.98%), Postives = 204/311 (65.59%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MA ++  RIFVGGLS E+T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYRGG---GYSSGGRDSSYGGGGGD 120
           MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+ S  GGGGG 
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 RSARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL--GDSDYGDRFAG-----D 180
               +DECFKCGR GHWARDCP  GGGRG     F SR     G     DR+A      D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 NNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRF-GSSRYNNDSGRFP 240
             RY+DDRY+G  R G RDRFD SR+ Y  RDRY SDRY    DRF G  RY+  S R+P
Sbjct: 181 RERYIDDRYDGAARYGARDRFD-SREAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYP 240

Query: 241 VNSFGKDRGYYRDGGP-RGVDKY---ESSGPAR---NEGRSYRNRP-APYDRPSRAAG-- 285
             S+ K R + RD  P  G D+Y    + GP R    EGR +R+R  APY+RPSR+ G  
Sbjct: 241 PGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGGG 300

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.3e-70
Identity = 158/298 (53.02%), Postives = 191/298 (64.09%), Query Frame = 0 

Query: 3   GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 62
           G  E RIFVGGLSW++TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQD 122
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +            +D
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT------------ED 127

Query: 123 ECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FAGDN 182
           ECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR          + 
Sbjct: 128 ECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREF 187

Query: 183 NRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPV 242
           +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY         
Sbjct: 188 DRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLEN 247

Query: 243 NSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285
              G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R+
Sbjct: 248 EYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-34
Identity = 111/283 (39.22%), Postives = 151/283 (53.36%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMG-----EDMDHGYRGGGYSSGGRDSSYGGGGGD 120
           MD+AI  M+G +   R I+V+KA+P  G      D D G R  GY       S G GGGD
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRG-RDRGYDRDRSRPSGGRGGGD 120

Query: 121 RSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY--VD 180
                  CFKCG+PGH+AR+CP    R  GG       R    D  DR++  ++RY   D
Sbjct: 121 -------CFKCGKPGHFARECPSESSRDGGG-------RFSSKD--DRYSSKDDRYGAKD 180

Query: 181 DRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKD 240
           DRY         DR+ +  D+Y S+D    DRY    DR+G SR    S   P  S  + 
Sbjct: 181 DRYG-----AKEDRYGAKDDRYSSKD----DRYSSKDDRYG-SRDGGGSRYGPDRSGERA 240

Query: 241 RGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAG 277
            G  RDGG RG    E            R+  APYDRP RA G
Sbjct: 241 GGRSRDGGSRGAPGGE------------RHSRAPYDRP-RAGG 243

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-24
Identity = 70/152 (46.05%), Postives = 90/152 (59.21%), Query Frame = 0 

Query: 1   MAGRD-EYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRR 60
           MA  D EYR FVGGL+W  +   LENAF+ +G+I+DS+++ ++ TGR RGFGF+TFS   
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  GMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGY----RGGGYSSGGRDSSYGGGGGD 120
            M DAI  M+G+E   R I+VN+A+ + G     GY     GGGY  G RD  YGGGGG 
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYGGGGGY 120

Query: 121 RSARQDECFKC-GRPGHWARDCPVGGGRGRGG 147
              R+       G  G+  R    GGG G GG
Sbjct: 121 GGRREGGGGGYGGGGGYGGRREGGGGGYGGGG 152

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.1e-24
Identity = 70/156 (44.87%), Postives = 87/156 (55.77%), Query Frame = 0 

Query: 6   EYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAI 65
           EYR FVGGL+W   +  LE AFS+FG I DS+I+ ++ TGR RGFGF+TF D + M DAI
Sbjct: 5   EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64

Query: 66  REMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQDECFK 125
             M+GQE   R I+VN+A+ +       G  GGG    G    YGGGGG    R+     
Sbjct: 65  EGMNGQELDGRNITVNEAQSR-------GSGGGGGRREGGGGGYGGGGGYGGRREGG--- 124

Query: 126 CGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYG 162
            G  G+  R    GGG G GG  +  R   GD  YG
Sbjct: 125 -GGGGYGGRREGGGGGYGGGGGGYGGRREGGDGGYG 149

[Close]
BLAST of Cp4.1LG09g04100 vs. NCBI nr
Match: XP_023541916.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541917.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541918.1 glycine-rich RNA-binding protein RZ1C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 577 bits (1487), Expect = 8.76e-208
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120

Query: 121 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG 180
           DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG
Sbjct: 121 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG 180

Query: 181 RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG 240
           RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG
Sbjct: 181 RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG 240

Query: 241 GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]
BLAST of Cp4.1LG09g04100 vs. NCBI nr
Match: XP_022966702.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 575 bits (1483), Expect = 3.57e-207
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120

Query: 121 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG 180
           DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS+YGDRFAGDNNRYVDDRYEGGG
Sbjct: 121 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSEYGDRFAGDNNRYVDDRYEGGG 180

Query: 181 RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG 240
           RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG
Sbjct: 181 RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG 240

Query: 241 GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]
BLAST of Cp4.1LG09g04100 vs. NCBI nr
Match: XP_022945121.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 572 bits (1475), Expect = 6.14e-206
Identity = 284/285 (99.65%), Postives = 284/285 (99.65%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG-DRSAR 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG DRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 120

Query: 121 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180
           QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG
Sbjct: 121 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180

Query: 181 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 240
           GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD
Sbjct: 181 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 240

Query: 241 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285

[Close]
BLAST of Cp4.1LG09g04100 vs. NCBI nr
Match: KAG6573850.1 (Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 567 bits (1462), Expect = 4.33e-203
Identity = 284/287 (98.95%), Postives = 284/287 (98.95%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ--IMLEKNTGRPRGFGFITFSDR 60
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQ  IMLEKNTGRPRGFGFITFSDR
Sbjct: 53  MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQKQIMLEKNTGRPRGFGFITFSDR 112

Query: 61  RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG-DRS 120
           RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG DRS
Sbjct: 113 RGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRS 172

Query: 121 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 180
           ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE
Sbjct: 173 ARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYE 232

Query: 181 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240
           GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY
Sbjct: 233 GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 292

Query: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 293 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 339

[Close]
BLAST of Cp4.1LG09g04100 vs. NCBI nr
Match: XP_038892830.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida])

HSP 1 Score: 512 bits (1318), Expect = 5.64e-182
Identity = 263/288 (91.32%), Postives = 270/288 (93.75%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDS-SYGGGGGDRSAR 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR S   GGGGGDRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGGGDRSAR 120

Query: 121 QDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEG 180
           QDECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGDSD GDRFAGDNNRYVDDRYEG
Sbjct: 121 QDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARARLGDSDRGDRFAGDNNRYVDDRYEG 180

Query: 181 GGRLGDRDRFDSS-RD-KYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGY 240
           GGR GDRDRFDSS RD KYGSRDRYVS+RYPP GDRFGSSRYNNDS RFPVN +GKDRGY
Sbjct: 181 GGRFGDRDRFDSSSRDNKYGSRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGY 240

Query: 241 YRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           YRDGGPRGVDKY S GPARNEGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 YRDGGPRGVDKYGSGGPARNEGRSYRNRPAPYDRPSRG-GRPSSFDRY 287

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy TrEMBL
Match: A0A6J1HNQ1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466335 PE=4 SV=1)

HSP 1 Score: 575 bits (1483), Expect = 1.73e-207
Identity = 283/284 (99.65%), Postives = 284/284 (100.00%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120

Query: 121 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGGG 180
           DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS+YGDRFAGDNNRYVDDRYEGGG
Sbjct: 121 DECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSEYGDRFAGDNNRYVDDRYEGGG 180

Query: 181 RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG 240
           RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG
Sbjct: 181 RLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRDG 240

Query: 241 GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy TrEMBL
Match: A0A6J1FZZ1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449458 PE=4 SV=1)

HSP 1 Score: 572 bits (1475), Expect = 2.97e-206
Identity = 284/285 (99.65%), Postives = 284/285 (99.65%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG-DRSAR 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGG DRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGGDRSAR 120

Query: 121 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180
           QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG
Sbjct: 121 QDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180

Query: 181 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 240
           GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD
Sbjct: 181 GRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYYRD 240

Query: 241 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY
Sbjct: 241 GGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy TrEMBL
Match: A0A1S3BGN5 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 504 bits (1298), Expect = 2.73e-179
Identity = 260/287 (90.59%), Postives = 267/287 (93.03%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR  SYGGGGGDRSARQ
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGR-GSYGGGGGDRSARQ 120

Query: 121 DECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180
           DECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGD D GDRFAGD NRYVDDRYEGG
Sbjct: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEGG 180

Query: 181 GRLGDRDRFDSS-RD-KYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240
           GR GDRDRFDSS RD KYGSRDRYVSDRYPP GDRFGS RYNNDS RFPVN +GKDRGYY
Sbjct: 181 GRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGYY 240

Query: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           RDG PRGVDKY S GPAR+EGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 RDG-PRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRG-GRPSSFDRY 284

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy TrEMBL
Match: A0A5D3CG30 (Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002430 PE=4 SV=1)

HSP 1 Score: 504 bits (1298), Expect = 2.73e-179
Identity = 260/287 (90.59%), Postives = 267/287 (93.03%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGR+EYRIFVGGLSW+ITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYS+GGR  SYGGGGGDRSARQ
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGR-GSYGGGGGDRSARQ 120

Query: 121 DECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRYVDDRYEGG 180
           DECFKCGR GHWARDCP VGGGRGRGGDSFL+R RLGD D GDRFAGD NRYVDDRYEGG
Sbjct: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEGG 180

Query: 181 GRLGDRDRFDSS-RD-KYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKDRGYY 240
           GR GDRDRFDSS RD KYGSRDRYVSDRYPP GDRFGS RYNNDS RFPVN +GKDRGYY
Sbjct: 181 GRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGYY 240

Query: 241 RDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 284
           RDG PRGVDKY S GPAR+EGRSYRNRPAPYDRPSR  GRPSSFDRY
Sbjct: 241 RDG-PRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRG-GRPSSFDRY 284

[Close]
BLAST of Cp4.1LG09g04100 vs. ExPASy TrEMBL
Match: A0A6J1HSW0 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466335 PE=4 SV=1)

HSP 1 Score: 500 bits (1287), Expect = 3.22e-178
Identity = 245/246 (99.59%), Postives = 246/246 (100.00%), Query Frame = 0 

Query: 39  MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 98
           MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG
Sbjct: 1   MLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGG 60

Query: 99  GYSSGGRDSSYGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS 158
           GYSSGGRDSSYGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS
Sbjct: 61  GYSSGGRDSSYGGGGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDS 120

Query: 159 DYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRY 218
           +YGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRY
Sbjct: 121 EYGDRFAGDNNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRY 180

Query: 219 NNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRP 278
           NNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRP
Sbjct: 181 NNDSGRFPVNSFGKDRGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAGRP 240

Query: 279 SSFDRY 284
           SSFDRY
Sbjct: 241 SSFDRY 246

[Close]
BLAST of Cp4.1LG09g04100 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 276.6 bits (706), Expect = 2.3e-74
Identity = 171/311 (54.98%), Postives = 204/311 (65.59%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MA ++  RIFVGGLS E+T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGED--MDHGYRGG---GYSSGGRDSSYGGGGGD 120
           MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+ S  GGGGG 
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 RSARQDECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRL--GDSDYGDRFAG-----D 180
               +DECFKCGR GHWARDCP  GGGRG     F SR     G     DR+A      D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 NNRYVDDRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRF-GSSRYNNDSGRFP 240
             RY+DDRY+G  R G RDRFD SR+ Y  RDRY SDRY    DRF G  RY+  S R+P
Sbjct: 181 RERYIDDRYDGAARYGARDRFD-SREAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYP 240

Query: 241 VNSFGKDRGYYRDGGP-RGVDKY---ESSGPAR---NEGRSYRNRP-APYDRPSRAAG-- 285
             S+ K R + RD  P  G D+Y    + GP R    EGR +R+R  APY+RPSR+ G  
Sbjct: 241 PGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGGG 300

[Close]
BLAST of Cp4.1LG09g04100 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-71
Identity = 158/298 (53.02%), Postives = 191/298 (64.09%), Query Frame = 0 

Query: 3   GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 62
           G  E RIFVGGLSW++TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQD 122
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +            +D
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT------------ED 127

Query: 123 ECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FAGDN 182
           ECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR          + 
Sbjct: 128 ECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREF 187

Query: 183 NRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPV 242
           +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY         
Sbjct: 188 DRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLEN 247

Query: 243 NSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285
              G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R+
Sbjct: 248 EYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Cp4.1LG09g04100 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-71
Identity = 158/298 (53.02%), Postives = 191/298 (64.09%), Query Frame = 0 

Query: 3   GRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 62
           G  E RIFVGGLSW++TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGQEFGERIISVNKAEPKM-GEDMDHGYRGGGYSSGGRDSSYGGGGGDRSARQD 122
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYSS G+ +            +D
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT------------ED 127

Query: 123 ECFKCGRPGHWARDCP-VGGGRGRGGDSFLSRPRLGDSD-----YGDR-------FAGDN 182
           ECFKC RPGHWARDCP  G  R R       R R+GD D     YGDR          + 
Sbjct: 128 ECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREF 187

Query: 183 NRYVDDRYE-GGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPV 242
           +RY+D R +  GGR   RDRFDS  DKY  RD Y  +RY P GDRF S RY         
Sbjct: 188 DRYMDGRRDRDGGRYSYRDRFDSG-DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLEN 247

Query: 243 NSFGKDRGYYRDGGPRGV-DKYESSGPARNEGRSYRNRPAPYDRPSRAAGRPSSFDRY 285
              G++R Y RD   R   D+Y   GP R+EGR YR+RP PYDRPSR  GRPSS++R+
Sbjct: 248 EYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Cp4.1LG09g04100 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 148.3 bits (373), Expect = 9.4e-36
Identity = 111/283 (39.22%), Postives = 151/283 (53.36%), Query Frame = 0 

Query: 1   MAGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMG-----EDMDHGYRGGGYSSGGRDSSYGGGGGD 120
           MD+AI  M+G +   R I+V+KA+P  G      D D G R  GY       S G GGGD
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRG-RDRGYDRDRSRPSGGRGGGD 120

Query: 121 RSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY--VD 180
                  CFKCG+PGH+AR+CP    R  GG       R    D  DR++  ++RY   D
Sbjct: 121 -------CFKCGKPGHFARECPSESSRDGGG-------RFSSKD--DRYSSKDDRYGAKD 180

Query: 181 DRYEGGGRLGDRDRFDSSRDKYGSRDRYVSDRYPPSGDRFGSSRYNNDSGRFPVNSFGKD 240
           DRY         DR+ +  D+Y S+D    DRY    DR+G SR    S   P  S  + 
Sbjct: 181 DRYG-----AKEDRYGAKDDRYSSKD----DRYSSKDDRYG-SRDGGGSRYGPDRSGERA 240

Query: 241 RGYYRDGGPRGVDKYESSGPARNEGRSYRNRPAPYDRPSRAAG 277
            G  RDGG RG    E            R+  APYDRP RA G
Sbjct: 241 GGRSRDGGSRGAPGGE------------RHSRAPYDRP-RAGG 243

[Close]
BLAST of Cp4.1LG09g04100 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-24
Identity = 78/192 (40.62%), Postives = 98/192 (51.04%), Query Frame = 0 

Query: 2   AGRDEYRIFVGGLSWEITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGM 61
           +G  EYR FVGGL+W   +R LE AF+++G +IDS+I+ ++ TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGQEFGERIISVNKAEPK-MGEDMDH------GYR---GGGYSSGGRDSSYGG 121
            DAI  M+GQ+   R I+VN+A+ +  G    H      GYR   GGGYS GG   SYGG
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGG--GSYGG 122

Query: 122 GGGDRSARQDECFKCGRPGHWARDCPVGGGRGRGGDSFLSRPRLGDSDYGDRFAGDNNRY 181
           GGG R                      GGG   GG  + SR             G    Y
Sbjct: 123 GGGRREG--------------------GGGYSGGGGGYSSR------------GGGGGSY 160

Query: 182 VDDRYEGGGRLG 184
              R EGGG  G
Sbjct: 183 GGGRREGGGGYG 160

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g04100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWN53.2e-7354.98Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE... [more]
O227033.3e-7053.02Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE... [more]
Q9LIN31.3e-3439.22Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE... [more]
P109793.6e-2446.05Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN... [more]
Q038788.1e-2444.87Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1[more]
BLAST of Cp4.1LG09g04100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023541916.18.76e-208100.00glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022966702.13.57e-20799.65glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima][more]
XP_022945121.16.14e-20699.65glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata][more]
KAG6573850.14.33e-20398.95Glycine-rich RNA-binding protein RZ1B, partial [Cucurbita argyrosperma subsp. so... [more]
XP_038892830.15.64e-18291.32glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida][more]
BLAST of Cp4.1LG09g04100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HNQ11.73e-20799.65glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=366... [more]
A0A6J1FZZ12.97e-20699.65glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3... [more]
A0A1S3BGN52.73e-17990.59glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
A0A5D3CG302.73e-17990.59Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuw... [more]
A0A6J1HSW03.22e-17899.59glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Cucurbita maxima OX=366... [more]
BLAST of Cp4.1LG09g04100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04280.12.3e-7454.98RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.12.4e-7153.02RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.22.4e-7153.02RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT3G26420.19.4e-3639.22RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT2G21660.12.2e-2440.63cold, circadian rhythm, and rna binding 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 122..138
e-value: 7.8E-6
score: 35.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 122..137
e-value: 1.4E-8
score: 34.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 123..137
score: 11.383412
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
e-value: 2.2E-28
score: 110.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..78
e-value: 3.3E-20
score: 71.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..85
score: 19.484827
NoneNo IPR availableGENE3D4.10.60.10coord: 118..160
e-value: 1.1E-8
score: 37.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..206
NoneNo IPR availablePANTHERPTHR15241:SF294GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKEcoord: 1..244
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 1..244
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..117
e-value: 2.8E-31
score: 110.5
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 104..139
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g04100.1Cp4.1LG09g04100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding