Cp4.1LG09g04000 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g04000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	thioredoxin-like 3-2, chloroplastic isoform X1
Location	Cp4.1LG09: 2572650 .. 2574713 (+)
RNA-Seq Expression	Cp4.1LG09g04000
Synteny	Cp4.1LG09g04000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCACGACTTGAGTTTTAATTAATTAATTAATTTATTTATTTATTTATTTTTATTTTATTCGGTTTTTTCGTTTCTTCTTCCACAAAACGGCGTTTTGTTGAAGGTTTTACAGCTTGGGAGATCGATCGGGAACAATCCTTCAACTGACTCTGAATCTCCCGGTGGGACCCCACCGGAACCCTCTTCAACCGGCCGCCGCCGCCACCCTCCGACCACTTCTTTTTCCGTTTCCCAATTCTTCATCCTTCCGAAATGGTGAAAGTTTTGCCTGTTCACTTCGGAACCGTGAAATCTATCCCCAAATTAGACGCTCGTTTTGATCTTCCGGCGGCCAAGCTCACCGTCTCTGGTTTCAACAGGCTTCCTCTGTCCCAAAAGTTTCCGCCGCTTTCCTTGAAAGTTTCTGCGACTGGTGAGAAGATTTCGGTGCTTGGGGATTGGACCCAAGAGAGTTCCCTGCAGTTTCGCGATGAATCTCCTGTGTCGATCGAGCTTAAGTCCATTTGTAGTGAACTTGAGTTCGATAAGGCTATTACGGATGCAGAGAAACGAAACGAGCCCGTGATTATTGTATGGTATGTATGCATTTCTTGTCGGATTTTCTGGGAAATGTTCACTTAATTATGAAGGTTTCTTCCAGAGCAGAGAAAGAAATCTAAACGATGTGAATGCATTTGAGCTTGACTGGATAGTGTTTGATAAAAAATTTATCTGTTTATCAGGAAAAATTGTCCTCAATTGCTTGATTTTCCCTTGCAATTTCATTGATTGTGATCATTTTGAATTGAACGATTTGATATATTTTGTCCAGTTTTCATTACCAGCATTTCAAGCAGTATTTTATATTCTTTTGTTGAAAAATGCGTTCGTGTGGATCTGTAGGATGGCAAACTGGTGCAGAAATTATATATATCTAAAGCCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTCTTAGCTCATTTCTAATCAACTGAATGTAAAATATGAATTGTACCATATCATCATTTTCCAAGCGCTGGATAATGCTTAGAAGACCTGTGTGCTAAGTACTTACTGAAATTGTGCATGTGCTTGATCAATTTTAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCTCACAAGCTAGTTGTTCGTGCAGGATTAGCTGTAAGTTCTTTCCAAAGCCTTTTGATGTTTCTTCCATTTTGTTTGTGTTGCCATAAATCTTTATAAGGGAGTTGAGTTCTGATAAATCCAATGGATATTGTTCTTGAGGTCTTGTTTACAATTGAAGTTAGACACGTGTTTCGTTGCATTCTCGAACATATACAATTTACGGTTCGATCATAGACATGTTGATACTTTGTTACTTTGATGAATTTGCATCTGTTTTGATGTTTATTAACATTCAATCTTTCCATTCATGGGTCTACAAGTTCTAATAGTTTCAAATTTTCACTTTTCTTCATGTATCTCTACTGTTCGTCTTTAAATCTACCAGAAGATGCCAGCCATACAGGTGAGTTTCTTCACGATCAGATACGATCAGATATCTTACAACTGGAATCCCTCCTCTCTACTAATGTCAAGGTCTTGACTATGTATGTTTGCAGCTATGGAAGGATAGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATTGAGCGTGAGCTTACAGGCGAGTAACTTATGATTCATTCTTACCCGCATCGTCTTATCCACTTTGTGGTATTAGAATTGATTTGACAGCATCTCACAGAAATTCCTTTCTGCTTATATTCATCAACATAAAGAAGAAGGCCTGGCTTGCCCTCTTGCCAAGTTTTTTTCATTACAGATATCATTTCTTTGTTGTCATAAGGTGGATGATCTAACATGTATGTCCAATTCTTAACAATATATGTATTCGTTGTCACATCATGAGGATGTCTTATTTGAAAGGCTTTACCAGCGTTTTTACACCATTCATTTACATTATATCTGATATGCAGATTCTCCTGTTCTGTGTTGGTAGATTAATTTAATTG

mRNA sequence

CACCCACGACTTGAGTTTTAATTAATTAATTAATTTATTTATTTATTTATTTTTATTTTATTCGGTTTTTTCGTTTCTTCTTCCACAAAACGGCGTTTTGTTGAAGGTTTTACAGCTTGGGAGATCGATCGGGAACAATCCTTCAACTGACTCTGAATCTCCCGGTGGGACCCCACCGGAACCCTCTTCAACCGGCCGCCGCCGCCACCCTCCGACCACTTCTTTTTCCGTTTCCCAATTCTTCATCCTTCCGAAATGGTGAAAGTTTTGCCTGTTCACTTCGGAACCGTGAAATCTATCCCCAAATTAGACGCTCGTTTTGATCTTCCGGCGGCCAAGCTCACCGTCTCTGGTTTCAACAGGCTTCCTCTGTCCCAAAAGTTTCCGCCGCTTTCCTTGAAAGTTTCTGCGACTGGTGAGAAGATTTCGGTGCTTGGGGATTGGACCCAAGAGAGTTCCCTGCAGTTTCGCGATGAATCTCCTGTGTCGATCGAGCTTAAGTCCATTTGTAGTGAACTTGAGTTCGATAAGGCTATTACGGATGCAGAGAAACGAAACGAGCCCGTGATTATTGTATGGATGGCAAACTGGTGCAGAAATTATATATATCTAAAGCCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCTCACAAGCTAGTTGTTCGTGCAGGATTAGCTAAGATGCCAGCCATACAGCTATGGAAGGATAGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATTGAGCGTGAGCTTACAGGCGAGTAACTTATGATTCATTCTTACCCGCATCGTCTTATCCACTTTGTGGTATTAGAATTGATTTGACAGCATCTCACAGAAATTCCTTTCTGCTTATATTCATCAACATAAAGAAGAAGGCCTGGCTTGCCCTCTTGCCAAGTTTTTTTCATTACAGATATCATTTCTTTGTTGTCATAAGGTGGATGATCTAACATGTATGTCCAATTCTTAACAATATATGTATTCGTTGTCACATCATGAGGATGTCTTATTTGAAAGGCTTTACCAGCGTTTTTACACCATTCATTTACATTATATCTGATATGCAGATTCTCCTGTTCTGTGTTGGTAGATTAATTTAATTG

Coding sequence (CDS)

ATGGTGAAAGTTTTGCCTGTTCACTTCGGAACCGTGAAATCTATCCCCAAATTAGACGCTCGTTTTGATCTTCCGGCGGCCAAGCTCACCGTCTCTGGTTTCAACAGGCTTCCTCTGTCCCAAAAGTTTCCGCCGCTTTCCTTGAAAGTTTCTGCGACTGGTGAGAAGATTTCGGTGCTTGGGGATTGGACCCAAGAGAGTTCCCTGCAGTTTCGCGATGAATCTCCTGTGTCGATCGAGCTTAAGTCCATTTGTAGTGAACTTGAGTTCGATAAGGCTATTACGGATGCAGAGAAACGAAACGAGCCCGTGATTATTGTATGGATGGCAAACTGGTGCAGAAATTATATATATCTAAAGCCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCTCACAAGCTAGTTGTTCGTGCAGGATTAGCTAAGATGCCAGCCATACAGCTATGGAAGGATAGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATTGAGCGTGAGCTTACAGGCGAGTAA

Protein sequence

MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERELTGE

Homology

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy Swiss-Prot
Match: Q8VZT6 (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.3e-44
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 24  LPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFRDESPVSIELKS 83
           +P  + T S F+R P + K+   + K+    E+I  +    Q+  LQ  D+SPVS+EL  
Sbjct: 22  VPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELGP 81

Query: 84  ICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 143
           IC E  FD+ + DA+K  E V+IVWMA WCR  IYLKP+LE+LAA++YPRL+FY +DVN 
Sbjct: 82  ICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNA 141

Query: 144 VPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERE 193
           VP++LV RAG+ KMP IQLW+D +KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 142 VPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy Swiss-Prot
Match: Q9FG36 (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 54/116 (46.55%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 76  PVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQ 135
           P ++E++ I +  E D  ++ A + ++P+II WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 136 FYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY +DVN VP  LV R  ++KMP IQLWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy Swiss-Prot
Match: Q6Z7L3 (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 8.6e-25
Identity = 57/131 (43.51%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GD    +   F D S   +E++ I S  + D A+  + +  +P+II WMA+WCR  IYLK
Sbjct: 63  GDGMLRAEAYFWDVSK-PVEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLK 122

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           P+LE++A + +P ++FY +DVN VP  +V R  + KMP IQLWKD +   EVIG +KA+L
Sbjct: 123 PRLEKIAGE-FPGVRFYFVDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWL 182

Query: 181 VVNDVQKMIER 192
           V+++V++MI++
Sbjct: 183 VMDEVREMIQK 191

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy Swiss-Prot
Match: Q1RQJ0 (Thioredoxin Asp f 29 OS=Neosartorya fumigata OX=746128 GN=CDV57_00134 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.4e-04
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 94  ITDA----EKRNE---PVIIVWMANWCRNYIYLKPQLERLA-ADYYPRLQFYCIDVNMVP 153
           ITDA    EK  E   PVI+   A WC     + P  +RL+ ++ +   +FY IDV+ + 
Sbjct: 8   ITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVDEL- 67

Query: 154 HKLVVRAGLAKMPAIQLWKDSKKQDEVIG 175
            ++    G+  MP    +KD +K +EV+G
Sbjct: 68  SEVAAELGVRAMPTFMFFKDGQKVNEVVG 95

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy Swiss-Prot
Match: G4NFB7 (Thioredoxin-2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=TRX2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.4e-04
Identity = 24/79 (30.38%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 96  DAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA 155
           DA K ++ V++ + A WC     + P++    +D +P + +  +DV+ VP  +     + 
Sbjct: 78  DALKSHKFVLVDFFATWCGPCRAIAPKIAEW-SDAFPNIHYVKVDVDEVP-DVAQEYNVR 137

Query: 156 KMPAIQLWKDSKKQDEVIG 175
            MP   L+KD +K DEV+G
Sbjct: 138 AMPTFLLFKDGEKVDEVVG 154

[Close]

BLAST of Cp4.1LG09g04000 vs. NCBI nr
Match: XP_023541920.1 (thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398 bits (1022), Expect = 7.82e-140
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 196

[Close]

BLAST of Cp4.1LG09g04000 vs. NCBI nr
Match: XP_022944830.1 (thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 396 bits (1018), Expect = 3.19e-139
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGTVKS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTVKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 196

[Close]

BLAST of Cp4.1LG09g04000 vs. NCBI nr
Match: KAG7012912.1 (Thioredoxin-like 3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1012), Expect = 2.62e-138
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGTVKS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTVKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQFRDESPVSIELKSICSELEFDKAI DAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAIMDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 196

[Close]

BLAST of Cp4.1LG09g04000 vs. NCBI nr
Match: XP_022967023.1 (thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 392 bits (1007), Expect = 1.52e-137
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGT+KS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTLKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQF DESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 196

[Close]

BLAST of Cp4.1LG09g04000 vs. NCBI nr
Match: XP_023541921.1 (thioredoxin-like 3-2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391 bits (1005), Expect = 2.95e-137
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA MPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-MPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 195

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy TrEMBL
Match: A0A6J1FZ60 (thioredoxin-like 3-2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449247 PE=4 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 1.54e-139
Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGTVKS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTVKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 196

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy TrEMBL
Match: A0A6J1HTY1 (thioredoxin-like 3-2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466549 PE=4 SV=1)

HSP 1 Score: 392 bits (1007), Expect = 7.34e-138
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGT+KS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTLKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQF DESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 196

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy TrEMBL
Match: A0A6J1FZ53 (thioredoxin-like 3-2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449247 PE=4 SV=1)

HSP 1 Score: 390 bits (1001), Expect = 5.82e-137
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGTVKS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTVKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA MPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-MPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 195

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy TrEMBL
Match: A0A6J1HVJ7 (thioredoxin-like 3-2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466549 PE=4 SV=1)

HSP 1 Score: 385 bits (990), Expect = 2.77e-135
Identity = 192/196 (97.96%), Postives = 193/196 (98.47%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60
           MVKVLPVHFGT+KS PKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL
Sbjct: 1   MVKVLPVHFGTLKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVL 60

Query: 61  GDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GDWTQESSLQF DESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK
Sbjct: 61  GDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA MPAIQLWKDSKKQDEVIGLYKAYL
Sbjct: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-MPAIQLWKDSKKQDEVIGLYKAYL 180

Query: 181 VVNDVQKMIERELTGE 196
           VVNDVQKMIERELTGE
Sbjct: 181 VVNDVQKMIERELTGE 195

[Close]

BLAST of Cp4.1LG09g04000 vs. ExPASy TrEMBL
Match: A0A5D3CG32 (Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002530 PE=4 SV=1)

HSP 1 Score: 337 bits (863), Expect = 8.13e-116
Identity = 166/202 (82.18%), Postives = 179/202 (88.61%), Query Frame = 0


Query: 1   MVKVLPVHFGTVKSIPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G VKS PK D+ FDLP      +A+L  SGFNRLPLS+KFPP+  KVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFRDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+LG WTQ+S+LQFRDESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKD KKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 196
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of Cp4.1LG09g04000 vs. TAIR 10
Match: AT5G04260.1 (WCRKC thioredoxin 2 )

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-45
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 0


Query: 24  LPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFRDESPVSIELKS 83
           +P  + T S F+R P + K+   + K+    E+I  +    Q+  LQ  D+SPVS+EL  
Sbjct: 22  VPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELGP 81

Query: 84  ICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 143
           IC E  FD+ + DA+K  E V+IVWMA WCR  IYLKP+LE+LAA++YPRL+FY +DVN 
Sbjct: 82  ICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNA 141

Query: 144 VPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERE 193
           VP++LV RAG+ KMP IQLW+D +KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 142 VPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of Cp4.1LG09g04000 vs. TAIR 10
Match: AT5G06690.1 (WCRKC thioredoxin 1 )

HSP 1 Score: 124.8 bits (312), Expect = 7.7e-29
Identity = 54/116 (46.55%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 76  PVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQ 135
           P ++E++ I +  E D  ++ A + ++P+II WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 136 FYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY +DVN VP  LV R  ++KMP IQLWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of Cp4.1LG09g04000 vs. TAIR 10
Match: AT5G06690.2 (WCRKC thioredoxin 1 )

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-17
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 76  PVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQ 135
           P ++E++ I +  E D  ++ A + ++P+II WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 136 FYCIDVNMVPHKLVVRAGLA 156
           FY +DVN VP  LV R  ++
Sbjct: 153 FYYVDVNKVPQTLVKRGNIS 172

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g04000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT6	6.3e-44	51.48	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE...	[more]
Q9FG36	1.1e-27	46.55	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE...	[more]
Q6Z7L3	8.6e-25	43.51	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q1RQJ0	8.4e-04	33.71	Thioredoxin Asp f 29 OS=Neosartorya fumigata OX=746128 GN=CDV57_00134 PE=1 SV=1	[more]
G4NFB7	8.4e-04	30.38	Thioredoxin-2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) O...	[more]

BLAST of Cp4.1LG09g04000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541920.1	7.82e-140	100.00	thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022944830.1	3.19e-139	99.49	thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita moschata]	[more]
KAG7012912.1	2.62e-138	98.98	Thioredoxin-like 3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022967023.1	1.52e-137	98.47	thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_023541921.1	2.95e-137	99.49	thioredoxin-like 3-2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG09g04000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ60	1.54e-139	99.49	thioredoxin-like 3-2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HTY1	7.34e-138	98.47	thioredoxin-like 3-2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FZ53	5.82e-137	98.98	thioredoxin-like 3-2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HVJ7	2.77e-135	97.96	thioredoxin-like 3-2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3CG32	8.13e-116	82.18	Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]

BLAST of Cp4.1LG09g04000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04260.1	4.5e-45	51.48	WCRKC thioredoxin 2	[more]
AT5G06690.1	7.7e-29	46.55	WCRKC thioredoxin 1	[more]
AT5G06690.2	5.2e-17	46.25	WCRKC thioredoxin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 87..178 e-value: 2.4E-9 score: 37.1
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 37..194 score: 9.17272
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 78..190 e-value: 5.7E-13 score: 50.5
None	No IPR available	PANTHER	PTHR47192:SF4	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 28..193
None	No IPR available	CDD	cd02947	TRX_family	coord: 89..190 e-value: 1.59018E-10 score: 53.7161
IPR044253	Thioredoxin-like 3-1/3-2	PANTHER	PTHR47192	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 28..193
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 82..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g04000.1	Cp4.1LG09g04000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma