Cp4.1LG09g03730 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g03730
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
LocationCp4.1LG09: 2229172 .. 2230657 (-)
RNA-Seq ExpressionCp4.1LG09g03730
SyntenyCp4.1LG09g03730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCGCGTTCTTGAAAGGTATAAGATTGCTTTAGCCTTCGTCTTCCTCACCCACCCACCGTTTAGTATATATAAGCCACAGCATTAATTAATCCTATAACCACATAGAGAGATCCAGAGAGAGAAGCTGTATGCAAGAAAATGGGAAGAAAAGAGATAGGATTGATTTTCATACTGTTTTGTTCTGCCATGGCCATAGCATCTTCTCTGCAAGAAATCTTGCCAACAGGTCAGTACACCAATTTTTCTCTCATTATATGCTCATATTTTTGGGACACAAATTTTCTGCTTAAATAAAAAGGGATTTATAAGTTCATTTATTGTATTTATTCTTTTTAAAATGTAAAAGGAAGTTATTAAAAAGTAAAATGAGATAAACTATAAAAGTGTCTATAAAGACAAAGTTGCATAATGAGTCAAACAAAGACCTGAAATAAAGTGTGCATTCCATAAACGACAAATTCGGATGAATGAAAGAATAATAAAAAGATGAATAGAAGAATACAGGTATCTTTTAATGTCAAAATGAAATAAATATATAAACCAAATAAAGTTTAATATTCTATGGAAAGATATATAAATAACGTTTAATAAAGAAAATAAATATATAAATCATGTTTAATAAAGAAAATAAATATACAAATAAAGTTTAATAGAGAAAATAAACATACAAAAAAAATTTATTCGAGAAAATAAATATACAAATAAGTTTTAATATAAATAAATTTTAATAAAGAAAATAAATATATAAATAAAGTTTAGTAAAGAAAATAAATATACATGTAAATTTTAATAGAGAGAATAAATCTATAATTAATGTACAAAACACCAAAAATATAATGGGTCGAGACGTAGATCATCAGAATAATATTTTAAAACGAAGAAACTTGCGCTGAAATGTAAACTTTAGAAAATGAAAGGGGAAAAAAAAAAAGTAATAAAACGAAATTTATTATATCTTCATTCCTAAACCAGATTCCATATGCGTGCAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGAGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGCCGCCGAGGTCGACCAGTCAATGCAGGAAATCGTCATGAGAACAACATGTGGCTTCTGGTATTGCACATCTGTAAGAGTTTTCTAATATGAAGGCTGCCTCCAAAGGGAGCACCTGGAGGAGAATCTGTAGAAAGCTGGGTTAGTTGTGAAGAGGAAAAATAACCGAAGGTTCTTGAGATCAATCAAAATATGATTTTTGGGTGGAATTTGTGTCTAGTCGTATAGGATTGTTATTTTTCTGATTTCTTCGTTAGAATACAAGAGATTACCTTTTGAT

mRNA sequence

TATCGCGTTCTTGAAAGGTATAAGATTGCTTTAGCCTTCGTCTTCCTCACCCACCCACCGTTTAGTATATATAAGCCACAGCATTAATTAATCCTATAACCACATAGAGAGATCCAGAGAGAGAAGCTGTATGCAAGAAAATGGGAAGAAAAGAGATAGGATTGATTTTCATACTGTTTTGTTCTGCCATGGCCATAGCATCTTCTCTGCAAGAAATCTTGCCAACAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGAGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGCCGCCGAGGTCGACCAGTCAATGCAGGAAATCGTCATGAGAACAACATGTGGCTTCTGGTATTGCACATCTGTAAGAGTTTTCTAATATGAAGGCTGCCTCCAAAGGGAGCACCTGGAGGAGAATCTGTAGAAAGCTGGGTTAGTTGTGAAGAGGAAAAATAACCGAAGGTTCTTGAGATCAATCAAAATATGATTTTTGGGTGGAATTTGTGTCTAGTCGTATAGGATTGTTATTTTTCTGATTTCTTCGTTAGAATACAAGAGATTACCTTTTGAT

Coding sequence (CDS)

ATGGGAAGAAAAGAGATAGGATTGATTTTCATACTGTTTTGTTCTGCCATGGCCATAGCATCTTCTCTGCAAGAAATCTTGCCAACAGAGTCCAATTGCCACCAGAAAACTAACACAGAAAAACATGGCGAAGATGAGGCTACTAACCAGATTGGCAGAAGAAACAGTGCATGTGCGATCACCGTTTCTCAGGCGGTTGCTCATGGAGGTGGTGCCAGGGGAGGTGGTGGTGTTAGTAGTCCTCATACAGGAGGAGGTAGTGCCGTAATCCCCATTTACGTAGCTGGTTCAGCGCAAGCACAACGCCGCCGAGGTCGACCAGTCAATGCAGGAAATCGTCATGAGAACAACATGTGGCTTCTGGTATTGCACATCTGTAAGAGTTTTCTAATATGA

Protein sequence

MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAITVSQAVAHGGGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWLLVLHICKSFLI
Homology
[Close]
BLAST of Cp4.1LG09g03730 vs. NCBI nr
Match: XP_023541367.1 (uncharacterized protein LOC111801573 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259 bits (662), Expect = 4.57e-87
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 60
           MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI
Sbjct: 1   MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 60

Query: 61  TVSQAVAHGGGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWL 120
           TVSQAVAHGGGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWL
Sbjct: 61  TVSQAVAHGGGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMWL 120

Query: 121 LVLHICKSFLI 131
           LVLHICKSFLI
Sbjct: 121 LVLHICKSFLI 131

[Close]
BLAST of Cp4.1LG09g03730 vs. NCBI nr
Match: XP_022945098.1 (uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata])

HSP 1 Score: 223 bits (568), Expect = 1.02e-72
Identity = 118/123 (95.93%), Postives = 119/123 (96.75%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAI-ASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACA 60
           MGRKE+GLIFILFCSAMAI ASSLQEILPTESNCHQKTNTEKHGED ATNQIGRRNSACA
Sbjct: 1   MGRKEMGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACA 60

Query: 61  ITVSQAVAHGGGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMW 120
           ITVSQAVAHGGGARGGGGVSSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAG RHENNMW
Sbjct: 61  ITVSQAVAHGGGARGGGGVSSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMW 120

Query: 121 LLV 122
           LLV
Sbjct: 121 LLV 122

[Close]
BLAST of Cp4.1LG09g03730 vs. NCBI nr
Match: XP_022945097.1 (uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata])

HSP 1 Score: 217 bits (552), Expect = 3.31e-70
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAI-ASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACA 60
           MGRKE+GLIFILFCSAMAI ASSLQEILPTESNCHQKTNTEKHGED ATNQIGRRNSACA
Sbjct: 1   MGRKEMGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACA 60

Query: 61  ITVSQAVAHGGGA-----RGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRH 120
           ITVSQAVAHGGGA     RGGGGVSSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAG RH
Sbjct: 61  ITVSQAVAHGGGASRGGARGGGGVSSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGTRH 120

Query: 121 ENNMWLLV 122
           ENNMWLLV
Sbjct: 121 ENNMWLLV 127

[Close]
BLAST of Cp4.1LG09g03730 vs. NCBI nr
Match: XP_022968347.1 (uncharacterized protein LOC111467612 isoform X2 [Cucurbita maxima])

HSP 1 Score: 214 bits (545), Expect = 3.86e-69
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 60
           MGR+EIGLIFILF SAMAIASSLQEIL TESNCHQKTNTEKHGED ATNQIGRRN ACAI
Sbjct: 1   MGRREIGLIFILFGSAMAIASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAI 60

Query: 61  TVSQAVAHGGGA-RGG----GGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHE 120
           TVSQAVAHGGGA RGG    GGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHE
Sbjct: 61  TVSQAVAHGGGASRGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHE 120

Query: 121 NNMWLLV 122
           N+MWLLV
Sbjct: 121 NDMWLLV 127

[Close]
BLAST of Cp4.1LG09g03730 vs. NCBI nr
Match: XP_022968346.1 (uncharacterized protein LOC111467612 isoform X1 [Cucurbita maxima])

HSP 1 Score: 210 bits (534), Expect = 2.63e-67
Identity = 116/138 (84.06%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 60
           MGR+EIGLIFILF SAMAIASSLQEIL TESNCHQKTNTEKHGED ATNQIGRRN ACAI
Sbjct: 1   MGRREIGLIFILFGSAMAIASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAI 60

Query: 61  TVSQAVAHGGGA-RGGG---------------GVSSPHTGGGSAVIPIYVAGSAQAQRRR 120
           TVSQAVAHGGGA RGGG               GVSSPHTGGGSAVIPIYVAGSAQAQRRR
Sbjct: 61  TVSQAVAHGGGASRGGGVSSPHTVGGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRR 120

Query: 121 GRPVNAGNRHENNMWLLV 122
           GRPVNAGNRHEN+MWLLV
Sbjct: 121 GRPVNAGNRHENDMWLLV 138

[Close]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match: A0A6J1FZV5 (uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 4.95e-73
Identity = 118/123 (95.93%), Postives = 119/123 (96.75%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAI-ASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACA 60
           MGRKE+GLIFILFCSAMAI ASSLQEILPTESNCHQKTNTEKHGED ATNQIGRRNSACA
Sbjct: 1   MGRKEMGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACA 60

Query: 61  ITVSQAVAHGGGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENNMW 120
           ITVSQAVAHGGGARGGGGVSSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAG RHENNMW
Sbjct: 61  ITVSQAVAHGGGARGGGGVSSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGTRHENNMW 120

Query: 121 LLV 122
           LLV
Sbjct: 121 LLV 122

[Close]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match: A0A6J1G000 (uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449437 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 1.60e-70
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAI-ASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACA 60
           MGRKE+GLIFILFCSAMAI ASSLQEILPTESNCHQKTNTEKHGED ATNQIGRRNSACA
Sbjct: 1   MGRKEMGLIFILFCSAMAIIASSLQEILPTESNCHQKTNTEKHGEDGATNQIGRRNSACA 60

Query: 61  ITVSQAVAHGGGA-----RGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRH 120
           ITVSQAVAHGGGA     RGGGGVSSPHTGG SAVIPIYVAGSAQAQRRRGRPVNAG RH
Sbjct: 61  ITVSQAVAHGGGASRGGARGGGGVSSPHTGG-SAVIPIYVAGSAQAQRRRGRPVNAGTRH 120

Query: 121 ENNMWLLV 122
           ENNMWLLV
Sbjct: 121 ENNMWLLV 127

[Close]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match: A0A6J1HTB9 (uncharacterized protein LOC111467612 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467612 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 1.87e-69
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 60
           MGR+EIGLIFILF SAMAIASSLQEIL TESNCHQKTNTEKHGED ATNQIGRRN ACAI
Sbjct: 1   MGRREIGLIFILFGSAMAIASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAI 60

Query: 61  TVSQAVAHGGGA-RGG----GGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHE 120
           TVSQAVAHGGGA RGG    GGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHE
Sbjct: 61  TVSQAVAHGGGASRGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHE 120

Query: 121 NNMWLLV 122
           N+MWLLV
Sbjct: 121 NDMWLLV 127

[Close]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match: A0A6J1HUL7 (uncharacterized protein LOC111467612 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467612 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.27e-67
Identity = 116/138 (84.06%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 1   MGRKEIGLIFILFCSAMAIASSLQEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 60
           MGR+EIGLIFILF SAMAIASSLQEIL TESNCHQKTNTEKHGED ATNQIGRRN ACAI
Sbjct: 1   MGRREIGLIFILFGSAMAIASSLQEILATESNCHQKTNTEKHGEDGATNQIGRRNRACAI 60

Query: 61  TVSQAVAHGGGA-RGGG---------------GVSSPHTGGGSAVIPIYVAGSAQAQRRR 120
           TVSQAVAHGGGA RGGG               GVSSPHTGGGSAVIPIYVAGSAQAQRRR
Sbjct: 61  TVSQAVAHGGGASRGGGVSSPHTVGGGASRGGGVSSPHTGGGSAVIPIYVAGSAQAQRRR 120

Query: 121 GRPVNAGNRHENNMWLLV 122
           GRPVNAGNRHEN+MWLLV
Sbjct: 121 GRPVNAGNRHENDMWLLV 138

[Close]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 5.68e-37
Identity = 74/131 (56.49%), Postives = 89/131 (67.94%), Query Frame = 0 

Query: 3   RKEIGLIFILFCSAMAIASSL--QEILPTESNCHQKTNTEKHGEDEATNQIGRRNSACAI 62
           R+E+ L+F+LFCS +   SS   Q+ILPTE N HQKTN EKHG+D  TN+I    SA AI
Sbjct: 4   RRELSLMFLLFCSTIPAISSARQQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYSARAI 63

Query: 63  TVSQAVAHG---GGARGGGGVSSPHTGGGSAVIPIYVAGSAQAQRRRGRPVNAGNRHENN 122
           TVSQ + HG   GG   GGG      GGG+AVIP+Y AGSAQA  R+GRP NAGN +ENN
Sbjct: 64  TVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENN 123

Query: 123 MWLLVLHICKS 128
           M LLV  +  +
Sbjct: 124 MGLLVASVLAA 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g03730 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g03730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023541367.14.57e-87100.00uncharacterized protein LOC111801573 [Cucurbita pepo subsp. pepo][more]
XP_022945098.11.02e-7295.93uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata][more]
XP_022945097.13.31e-7092.19uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata][more]
XP_022968347.13.86e-6991.34uncharacterized protein LOC111467612 isoform X2 [Cucurbita maxima][more]
XP_022968346.12.63e-6784.06uncharacterized protein LOC111467612 isoform X1 [Cucurbita maxima][more]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FZV54.95e-7395.93uncharacterized protein LOC111449437 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1G0001.60e-7092.19uncharacterized protein LOC111449437 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HTB91.87e-6991.34uncharacterized protein LOC111467612 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HUL71.27e-6784.06uncharacterized protein LOC111467612 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JB475.68e-3756.49uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159... [more]
BLAST of Cp4.1LG09g03730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g03730.1Cp4.1LG09g03730.1mRNA