Cp4.1LG09g03620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g03620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG09: 2096468 .. 2098679 (-)
RNA-Seq ExpressionCp4.1LG09g03620
SyntenyCp4.1LG09g03620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGACGGTTCAACCGAACCGTCGGCAATTCCCTTGGCCTTAGCCGTTTTTTTGCCCTAAAATTGAAATTGCCCCACGCCGACCCCTCTCTTCCCGTGCCTCTTCTTTCTTCCCTTCGAGGCACCGTCCTAGCCCTCTCCTGCAGCCCCGCCGCCGTCGATCGACCACCTCGCATCGCCGGTCGCTTGCCTCGCCGCTGCGCCTACATATTTGTTCCTTCGTCATTGGCCACCCGCACGGCCTCTAACCACTTCTTCCTTCGCTGTGAGTTCTTTTTCTTCTTGCAAATCTTATTACTTCGGAGAGTGCTTGCTGTTTCTATATAATATAGTCTGTATGTGTCTTGTTTGGAATTTAAGTATCTGAAATGATTATTCAGTTTACAGAATTGAAGATTCTTTTGTGTTTTTTCCTATCGAAAATCTCCGATGTGTGGGGTTTCTCTGTTTTGGAGTATTAAAATCATCATGTTGTCTATGCTTGCATATCTCTCACTCTATGATTTGTGTATATACGCCACTTGCAATGCTACGAATCTATGTATATTTTGAGCTCATGGAGGAAGTGGATTTGCAATTTATCACATGTAGAGTGGACAGCCAAGCTAGCGGTTCTAGTTTAGCTTCAAATATATGTATATGTATATGTTTTGGTCTATTTGTACTTTATAACTTATTTTTAGTTGTTTTGTGATGTTGCTTATGAATTCATGGGTATTGAATAGATTTGAACTATATGATAACCCAATAAATTGGTCTCAATCCTTATAATTCCTTTGTTTTAGAATTTGATTCTGTTTTGAAGTGCTGGAATTGAGTTGAAGGTAAATTTTGGGTTGATTTCAGTGGTGATTTCTTGCTTGAGGTGAGAATTTTACCCTTTCTTTCTTTATTAGCTGAATTTTTCTTTCTTTATTAGCTGAATTTTTGAATTTTTGTTCTTGGTTGGTGTAATGGCTCGAGCCCTCCGCTAGCAAATATTGTCCTCTTTGGATTTTTCCTTCCGGGCTTCTCCTCGAGGTTTTGAAACGCATTTGCTAGGGAGAGAATTCCACACTCTCATAAAAATGTTTAGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCATCCCCATTCGGGGCCTAGCTTCTCGTTGGCACTCGTTCCCTTCTCCAATTGTTGTGAGACCCCCCAATCCATCCAGCACCTCGTGTCCACCCCCCTTTGGGGCTCAGCCTCCTCGTTGGCACATCTCCCGGTGTCTGGCTCTGATATCATTTGTAATAGCCCAAGCCCACAGCTAGCAGATATAGTCCTTTTTGGGCATTGTGAGATCCCACATCAGTTGGAGAGGAGAACAAAATGTCCTTTAGAAGAGTGTGGAAATTCTCTCTAGCAAACACGTTTTAAAACCCTGAGAGGAAGCCTGGAGGGGATAGTCCAAAGAGGACAATATCTGTTAGCGGTGGACTTGGGTCGTTACACTTGGAGACTCATAGGTGGTTAGAATTTCCTTTCGAAGTGTTCGGTGGATTAGGGCATGATGCTTATACTTCGTGAAGCTTGTTGTTGTGTGTGGCTATCCTGCAATTATGGTAGCTGATGAATCGAGTATAGGGGTCTGCTCATTGGATGAGTTTGGTTGTCAATGCTTGAAATTTTGAGTTTACGTTCTTAAATTTGGATAAGTTAAGTTACGAGCTTTGCGTTTATTTGGCTTGTTCGAGTGTTTAAGGTCGGTTAACTTTGATGCCAAATCTATTATGTTTTATAACTTCGATTACTTCGTAAAGTTAGTTCAAATTGATTGTTTTTGTTCGTTATAATTGTTTTTAAAATACTTGTTTTAATTTAATGAAGTATTGACTTTGTTTTCTTAGGTGGGTCGTGTCAGGTTGGGTCGATATTATTTTCGAAAGCTACTTTTGAAGAAGATAACATGAAGACAACAATATCCGAAGATGTCGACACCATTTTCGTTAGCTTGCATATCTAGTAAATGTGGACGCCGCCCCCTACTGCTGGCAATGGTAATACAGACGAGGTTGTGTCGATGTTGTTTTGACAGCTTTTCGTGCGTTGAGAAAATCCTTTTATGATGCTTTTCCGACCTTTTTCGACACTTCTTTTGGCATCTGAAAAAAGAAATCCGATATTATTGTTAACTAAATATGTTACAGTTAATTCGAAGTTACCTCTTTTTTTTTTTTTTTTAATCAAGTCTGTGA

mRNA sequence

ATGCCGACGCCCTCTCCTGCAGCCCCGCCGCCGTCGATCGACCACCTCGCATCGCCGGTCGCTTGCCTCGCCGCTGCGCCTACATATTTGTTCCTTCGTCATTGGCCACCCGCACGGCCTCTAACCACTTCTTCCTTCGCTGTTGGGTCGATATTATTTTCGAAAGCTACTTTTGAAGAAGATAACATGAAGACAACAATATCCGAAGATGTCGACACCATTTTCGTTAGCTTGCATATCTATCTGTGA

Coding sequence (CDS)

ATGCCGACGCCCTCTCCTGCAGCCCCGCCGCCGTCGATCGACCACCTCGCATCGCCGGTCGCTTGCCTCGCCGCTGCGCCTACATATTTGTTCCTTCGTCATTGGCCACCCGCACGGCCTCTAACCACTTCTTCCTTCGCTGTTGGGTCGATATTATTTTCGAAAGCTACTTTTGAAGAAGATAACATGAAGACAACAATATCCGAAGATGTCGACACCATTTTCGTTAGCTTGCATATCTATCTGTGA

Protein sequence

MPTPSPAAPPPSIDHLASPVACLAAAPTYLFLRHWPPARPLTTSSFAVGSILFSKATFEEDNMKTTISEDVDTIFVSLHIYL
Homology
[Close]
BLAST of Cp4.1LG09g03620 vs. NCBI nr
Match: KAG7012975.1 (hypothetical protein SDJN02_25729, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (356), Expect = 2.25e-41
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 5  SPAAPPPSIDHLASPVACLAAAPTYLFLRHWPPARPLTTSSFAVGSILFSKATFEEDNMK 64
          SPAAPPPS D   SPVACLAAAPTYLFLRHWPPARPLTTSSFAVGSILFSKATFEEDNMK
Sbjct: 15 SPAAPPPSFDQDESPVACLAAAPTYLFLRHWPPARPLTTSSFAVGSILFSKATFEEDNMK 74

Query: 65 TTISEDVDTIFVSLHI 80
          TTISED+DTIFVSLHI
Sbjct: 75 TTISEDIDTIFVSLHI 90

[Close]
BLAST of Cp4.1LG09g03620 vs. NCBI nr
Match: KAG6573909.1 (hypothetical protein SDJN03_27796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 1.71e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 48  VGSILFSKATFEEDNMKTTISEDVDTIFVSLHI 80
           VGSILFSKATFEEDNMKTTISED+DTIFVSLHI
Sbjct: 91  VGSILFSKATFEEDNMKTTISEDIDTIFVSLHI 123

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g03620 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g03620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012975.12.25e-4193.42hypothetical protein SDJN02_25729, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573909.11.71e-1196.97hypothetical protein SDJN03_27796, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG09g03620 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g03620 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g03620.1Cp4.1LG09g03620.1mRNA