Cp4.1LG09g00830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g00830
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG09: 552927 .. 554728 (+)
RNA-Seq Expression	Cp4.1LG09g00830
Synteny	Cp4.1LG09g00830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAAAGCACATAAGAGGTAATCTGTACTCGCGTTTGGGTCAAGCCAACGCAAAGGAGATGCCAACCTATTGGCTCTCTTCGCAGATCGCTCTATAAAAGCCATCGTAATTAACTCCAAACCCACTGGAAAACTCCATTTTTCTTCCTTCTTCTTCTTCTTCTCTGTGTTTTCTTTCCTCATAAACCCTAGCCATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGTGAGTTTAGGGTTAACGTCAAACAAAAGAGGACGATGATTATTTTCGATTTTTTTTTTTTTTTTTTTACTAAAAAAGGACCAATCAAACAGCGTCAAAACTATACGATAAAAGTGGGAATAGTGAATATTCCTTACGAAGATATTTATATAAATTATATATATATATATATATATATATATATATATATATATATATATATATCAATTAATATTCATTATCAATAAACATATCAATTAATATTCATTCCTTTCTGGCTGCTTGCATTTTCTTTTTTTGTTATTATTGCCTTTTTTTAATTTTTTTAAAAAAAAAAACCTTTTGCCTGTGATCCAGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCGCTACCGCCTATTTCAATTCAAGATCAGGTTAGTCAGAACTCCATATCAAACATTGCATTTCTTCTTTCTTTCTTTTTTCTCTTCCAATATTAGAAATTGTATATTATATATATCCACACCAATTTTTGTTTTTTTTATAAACTTTTGTTTTTATCCCCTACGAGTTTGGTTGAGTTGAGATAGTGCTCGAATGATTGATTTTTAAAAATATATTTAAACATATTATATTTATCTCTAACATTTGTTATTAACGTCAATAGAGTAGATTGTGTACCCTATTATAGAGTCAGTGATCCCTGAAGTAAGTTGGGTTGATCTAACTAGCCTGAAGCTAGTCAGATTGTAAGTTGGCTAGTCTTGTTAGTCTGAAGCAAACAAACAATTTTTTTTTGTTTTCTAAAATTTTAAGCTAACCCAAATCGAAAAATATCTAATTCTACCCAACTCTAATAGTTTGAATTATGAACGTCGGTTGGTTTGAGTATTTTTTATGGTGACATGTAAAAATAGATCTTAATTAAGAAGGGATTAAAAGTGATTAAATTATAAGTAAGTTGAGTATTATGCCATAATGAAAGTTTAAATTTTATTAATTTATAAATAAATTAATAAAGTCGAAGAAAAAAATATCTGCCTTCAATAAATGAATAATCCAGGATCGATATCTCATAAATTATGCATGAATTAGTTAGAAAATAATGTGTAATTTTTGGTAAGTAATTAATAATTAACATAAAGGGCATGCTTGTGTGATCGGACAGGTGGTCCCACAAATGGAAAATAGAGCAGCTGAGGAAGAAGATGAGGAAGACCATCCAACGTCACCCATCAATCGCTAAATATAATAATATTATTTCTTTGCATTTTTCCACTATTTAATTTTTTATTTTTTTTATGTCTTCTCACTTTATTGGGTTAAATCTAAATTAACGATGGTGTGAAAAAAAAGGTTTAATGGAAAGAATTAAATGTAATTGGGCGGAAGAATTAATTGATTATGTC

mRNA sequence

AGGAAAAGCACATAAGAGGTAATCTGTACTCGCGTTTGGGTCAAGCCAACGCAAAGGAGATGCCAACCTATTGGCTCTCTTCGCAGATCGCTCTATAAAAGCCATCGTAATTAACTCCAAACCCACTGGAAAACTCCATTTTTCTTCCTTCTTCTTCTTCTTCTCTGTGTTTTCTTTCCTCATAAACCCTAGCCATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCGCTACCGCCTATTTCAATTCAAGATCAGGTGGTCCCACAAATGGAAAATAGAGCAGCTGAGGAAGAAGATGAGGAAGACCATCCAACGTCACCCATCAATCGCTAAATATAATAATATTATTTCTTTGCATTTTTCCACTATTTAATTTTTTATTTTTTTTATGTCTTCTCACTTTATTGGGTTAAATCTAAATTAACGATGGTGTGAAAAAAAAGGTTTAATGGAAAGAATTAAATGTAATTGGGCGGAAGAATTAATTGATTATGTC

Coding sequence (CDS)

ATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCGCTACCGCCTATTTCAATTCAAGATCAGGTGGTCCCACAAATGGAAAATAGAGCAGCTGAGGAAGAAGATGAGGAAGACCATCCAACGTCACCCATCAATCGCTAA

Protein sequence

MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTSPINR

Homology

[Close]

BLAST of Cp4.1LG09g00830 vs. NCBI nr
Match: XP_023542542.1 (uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249 bits (637), Expect = 1.76e-83
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
           HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

Query: 121 PINR 124
           PINR
Sbjct: 121 PINR 124

[Close]

BLAST of Cp4.1LG09g00830 vs. NCBI nr
Match: XP_022945615.1 (uncharacterized protein LOC111449801 [Cucurbita moschata] >KAG6574168.1 hypothetical protein SDJN03_28055, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 1.02e-82
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
           HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

Query: 121 PIN 123
           PIN
Sbjct: 121 PIN 123

[Close]

BLAST of Cp4.1LG09g00830 vs. NCBI nr
Match: XP_022968364.1 (uncharacterized protein LOC111467625 [Cucurbita maxima])

HSP 1 Score: 243 bits (619), Expect = 9.82e-81
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
           HQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDH TS
Sbjct: 61  HQKYRKNHHPTAGGGRLDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHLTS 120

Query: 121 PIN 123
           PIN
Sbjct: 121 PIN 123

[Close]

BLAST of Cp4.1LG09g00830 vs. NCBI nr
Match: KAG7013222.1 (hypothetical protein SDJN02_25980 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204 bits (520), Expect = 1.08e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 100
           HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 100

[Close]

BLAST of Cp4.1LG09g00830 vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 176 bits (446), Expect = 2.12e-54
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
            QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQVVPQME RA E+EDE DHP S
Sbjct: 61  PQKNRKKH--SISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

Query: 121 PIN 123
           P+N
Sbjct: 121 PVN 121

[Close]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL
Match: A0A6J1G1G2 (uncharacterized protein LOC111449801 OS=Cucurbita moschata OX=3662 GN=LOC111449801 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 4.94e-83
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
           HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

Query: 121 PIN 123
           PIN
Sbjct: 121 PIN 123

[Close]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL
Match: A0A6J1HZF8 (uncharacterized protein LOC111467625 OS=Cucurbita maxima OX=3661 GN=LOC111467625 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 4.75e-81
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
           HQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDH TS
Sbjct: 61  HQKYRKNHHPTAGGGRLDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHLTS 120

Query: 121 PIN 123
           PIN
Sbjct: 121 PIN 123

[Close]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 1.03e-54
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
            QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQVVPQME RA E+EDE DHP S
Sbjct: 61  PQKNRKKH--SISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

Query: 121 PIN 123
           P+N
Sbjct: 121 PVN 121

[Close]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 2.14e-54
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
            QK RK H  + G  RMDGRSSRRSRRI SLP  SIQDQVVPQME RA E+EDE DHP S
Sbjct: 61  PQKNRKKHSISVGT-RMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

Query: 121 PIN 123
           P+N
Sbjct: 121 PVN 122

[Close]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 2.49e-53
Identity = 88/123 (71.54%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQF++TGP WT+EKH+HFLNS+EASFVRSM++N  HRR LRL+RLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120
              + KN HPT+G  R++GRS+RRSRRISS P  S QDQVVPQME RA E+EDE DHP S
Sbjct: 61  PHNHTKN-HPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMS 120

Query: 121 PIN 123
           P+N
Sbjct: 121 PLN 122

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00830 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g00830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542542.1	1.76e-83	100.00	uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo]	[more]
XP_022945615.1	1.02e-82	100.00	uncharacterized protein LOC111449801 [Cucurbita moschata] >KAG6574168.1 hypothet...	[more]
XP_022968364.1	9.82e-81	98.37	uncharacterized protein LOC111467625 [Cucurbita maxima]	[more]
KAG7013222.1	1.08e-65	100.00	hypothetical protein SDJN02_25980 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022984701.1	2.12e-54	75.61	uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1G2	4.94e-83	100.00	uncharacterized protein LOC111449801 OS=Cucurbita moschata OX=3662 GN=LOC1114498...	[more]
A0A6J1HZF8	4.75e-81	98.37	uncharacterized protein LOC111467625 OS=Cucurbita maxima OX=3661 GN=LOC111467625...	[more]
A0A6J1J606	1.03e-54	75.61	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JBA6	2.14e-54	75.61	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L5V0	2.49e-53	71.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g00830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..116
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g00830.1	Cp4.1LG09g00830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold