Cp4.1LG09g00780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG09g00780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionrRNA 2'-O-methyltransferase fibrillarin 2-like protein
LocationCp4.1LG09: 438139 .. 441408 (-)
RNA-Seq ExpressionCp4.1LG09g00780
SyntenyCp4.1LG09g00780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCCCCAAAACCTTATTTCTGAACCCGGTCCTCTTATTGCCGCCGCACGCAACCCCTATAAATTTAAAACCCTTAACCAGCGTCCTTTACTTCGTCCCCGCGCTCTGTTGTTCTAAAACCCTAGTGGAAACTATCCTTCGGCGCTCGCTCTTTCGGTCACTGAAATGAGACCTCCCCGAGGTACGTACGAGAAACAAGTAGAGGTTTTACTCTTTTTGTCTACGATTGTTCGTTTGTTTTTGGATTTTGAAAAAGATCCGTTGAATACAATGGAGAAGAATGTTTGTAACTTCATGTATTGTTGGTCTGTTTTGTTTTGCTAGTTGAGCGCGTATGAGCTTTTCCATTCTTACTACTTACTGAACTACTATAAAATATCGTTTACTGCTTGGTCGATTGTTTGCTCCAGCTCTTTAGTTTACTCTGTTTTCTTGGAGTTGTCTAGCTTTCGTGTTCTTTTAATATCTTGATTTTTTTAAATATTTCGAAGCGTGTGTTTCACTTTGCACGAGTCGTTTAATTTTAATAAGTTTGATATGTGCAGGCCGCGGTGGTGGTGGTGGATTTAGAGGAAGGGGTGATGGAGGCAGGGGTGGTAGAGGCAGAGGTGGCGGTGGCAGTGGAGGTAGAGGTTTCGGTGGAGGCAGAGGTATGGCAAGCCGCGGTGGCGGTCGCGGAGGTGGAAGAGGTCGCGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGTGAATCCGTGTACAATGAGAAGAGAATATCCGTACAGGTGATCCACGTCAAACAGTATTATGGCCCTTTAAATGCCTTACGCCTTAATATTTTTTAGTTTCAAGAACTTCGATGACTAGTGTTTGATATACTGTTCTGTGATGATTTCTAGTTAGCATTATAATGTCCGAATAGGTGGTGAATGTTGATATTTTTGTTGCTCGAATCATTTATACATCGACCATTGTTACTTCAATGGCCGCGTAAGTATATAGCTGTGTTCGCTAGTTGCCTTTAAGCTGTATGCATAGCTAATTGAATTATATGTTCTGCTCTTCCAGAATGAAGATGGAACAAAAATTGAATACAGAGTATGGAACCCATTCAGGTCCAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTGTAAGTGCTACCACCTCATATTTGGTGTTCTAGTCTTTTATGTGTTACTCCTCGTTTTCAAACTTTTTAATGTGTAAACGTACGTTCTGTAGAAACCTGGTGCTCGAGTGCTGTATCTTGGTGCTGCTTCAGGAACAACTGTGTCTCACGTCTCAGATGTTGTTGGACCTGTAAGTAGTTATTTAAGGAGTATCTTCAGTAATTTTCATGAAGTAAAGGGTTATTAACAATTGTTGCTGCTTTGATTTGCAGTCTGGTATAGTGTATGCCGTTGAATTCTCCCATAGAAGTGGTAGAGATTTAGTCAACATGGCTAAGAAGCGTACTAATGTTATTCCCATCATTGAAGATGCCAGACATCCAGCCAAGTACCGAATGTTGGTTGGTATGGTGGATGTTATCTTTTCGGATGTTGCTCAGCCAGACCAGGTTCGTATCTCTTCTTTTTATGTGTTATCATTGTATGTGAACAACATCAACATAGCTGAAATTTGATGTCGTAGTTCCTTTGTTTATATAATAAATAGAATCTATCTGTTGTTTCTTTTACCTTACTTTTTAACACCTTTTGATGCAATTTTATCATTTTAATCTTCATGCCTTTTTATCCTTCAATTATTTAGCATATGACGATTTGCTCGGATTCCCCTTCAAGACTTCTTGAATGATGCAAAATTCGAGTTTCTGATGCTTTAAAAAACTTTCTTTTTAATTTTTATTTTCGTTTGTTTTTTTTTCTAAATTGCATCGTTCTTCCACAACTTGTGGTTGGAGTTCTCAATTTCATTTCTTCATTTTTCTATTACCCACGGAATATTTTTGTCATCATATTTTTCCCTTCATTGATTTAAACATAGTTATTGCATTCACTTCAATTTCACTTCTACCTCTTTTTTGTTTAGTAGAGAAGGCTATGACCGTTGCTGATACTTGAAATCAAAGTGCTCTGTTTTTGTATTTTTATTTATATTTGGAGTTTTTGTAGTGCTCTTGTTGCGATACATTCTTAATCAATATATTATATTATCTCTATATGCCCACCTACCCAATGATAATCTCTATGGTGTGTAAGCTTTGGGAAATGAGTTGTAATGTGACGGTGCTGCAAATTTTAAGCTTTCAATTCACATAATTTTCACTTAATAATTTATTTCTTGCTTCTGGTTATCCTGCAGGTATATTTTCCTCCGTACATAGTTCTTATCATATTTTTTACCTTTTAGGCTCTTCCTCTTTTCTTAGCATGTGATGAACTACTCGGATTCCCCTTCAAGACTTCTTGAATGATGCACAAACCGAGTTTCTGATGTGTCCTAGAATTTCCTATTTTCTAAAACCCTTCATCAGTTCTGACTTTTTTAGTCTTCTTGCTTGGCTAATTAATTCTTTGAACCTACGAACTTGTCTACATCTTGATTCTTACATTGACCTCTTTACTTTTTCAACGCAGGCAAGAATTTTGGCCCTTAATGCATCCTATTTTCTAAAAGCCGGTGGCCATTTTGTCATATCAATCAAGGTGAGTGAATGAATTGCCCTTTTTTTTAAAAGCGAAACATGGCGTAATCCATGAACAGAAAATGATATATTTCATATTGAACTTTGCAGGCCAACTGTATCGACTCAACCGTTCCAGCAGAGGCAGTGTTTGCAAGTGAAGTGAACAAGCTAAAGGCAGACCAGTTCAAACCCACAGAGCAAGTGACTCTTGAACCATTCGAGCGAGACCATGCTTGTGTTGTTGGTATCTATCGAGCACCAAAGAAGCAGAAGCCTGCTGCTTAGACAGTGAAGCGAACAACCAGGGTTTTGTTTTCTTATGGATGATTTATAGATAGCTCATAGCTGTAGTTTATCCATGTTTCTTATTTGATGATGATGTCTTGTAGCCAATTACTTTTAAAATACAATGTGAGTGAACGCTTATGTTTCTGATAATTTTGGTGATTATTTAAGTACTGAATTTGCTACCTTTTCTCTCCCTTTTTTGTACATTCTTGTATTCCTAGATTAAATTACAAGTTTGGTCTATGGT

mRNA sequence

CGCCCCCAAAACCTTATTTCTGAACCCGGTCCTCTTATTGCCGCCGCACGCAACCCCTATAAATTTAAAACCCTTAACCAGCGTCCTTTACTTCGTCCCCGCGCTCTGTTGTTCTAAAACCCTAGTGGAAACTATCCTTCGGCGCTCGCTCTTTCGGTCACTGAAATGAGACCTCCCCGAGGCCGCGGTGGTGGTGGTGGATTTAGAGGAAGGGGTGATGGAGGCAGGGGTGGTAGAGGCAGAGGTGGCGGTGGCAGTGGAGGTAGAGGTTTCGGTGGAGGCAGAGGTATGGCAAGCCGCGGTGGCGGTCGCGGAGGTGGAAGAGGTCGCGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGTGAATCCGTGTACAATGAGAAGAGAATATCCGTACAGAATGAAGATGGAACAAAAATTGAATACAGAGTATGGAACCCATTCAGGTCCAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGCTGTATCTTGGTGCTGCTTCAGGAACAACTGTGTCTCACGTCTCAGATGTTGTTGGACCTGCAAGAATTTTGGCCCTTAATGCATCCTATTTTCTAAAAGCCGGTGGCCATTTTGTCATATCAATCAAGGCCAACTGTATCGACTCAACCGTTCCAGCAGAGGCAGTGTTTGCAAGTGAAGTGAACAAGCTAAAGGCAGACCAGTTCAAACCCACAGAGCAAGTGACTCTTGAACCATTCGAGCGAGACCATGCTTGTGTTGTTGGTATCTATCGAGCACCAAAGAAGCAGAAGCCTGCTGCTTAGACAGTGAAGCGAACAACCAGGGTTTTGTTTTCTTATGGATGATTTATAGATAGCTCATAGCTGTAGTTTATCCATGTTTCTTATTTGATGATGATGTCTTGTAGCCAATTACTTTTAAAATACAATGTGAGTGAACGCTTATGTTTCTGATAATTTTGGTGATTATTTAAGTACTGAATTTGCTACCTTTTCTCTCCCTTTTTTGTACATTCTTGTATTCCTAGATTAAATTACAAGTTTGGTCTATGGT

Coding sequence (CDS)

ATGAGACCTCCCCGAGGCCGCGGTGGTGGTGGTGGATTTAGAGGAAGGGGTGATGGAGGCAGGGGTGGTAGAGGCAGAGGTGGCGGTGGCAGTGGAGGTAGAGGTTTCGGTGGAGGCAGAGGTATGGCAAGCCGCGGTGGCGGTCGCGGAGGTGGAAGAGGTCGCGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGTGAATCCGTGTACAATGAGAAGAGAATATCCGTACAGAATGAAGATGGAACAAAAATTGAATACAGAGTATGGAACCCATTCAGGTCCAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGCTGTATCTTGGTGCTGCTTCAGGAACAACTGTGTCTCACGTCTCAGATGTTGTTGGACCTGCAAGAATTTTGGCCCTTAATGCATCCTATTTTCTAAAAGCCGGTGGCCATTTTGTCATATCAATCAAGGCCAACTGTATCGACTCAACCGTTCCAGCAGAGGCAGTGTTTGCAAGTGAAGTGAACAAGCTAAAGGCAGACCAGTTCAAACCCACAGAGCAAGTGACTCTTGAACCATTCGAGCGAGACCATGCTTGTGTTGTTGGTATCTATCGAGCACCAAAGAAGCAGAAGCCTGCTGCTTAG

Protein sequence

MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKPAA
Homology
[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy Swiss-Prot
Match: Q94AH9 (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB2 PE=1 SV=2)

HSP 1 Score: 311.6 bits (797), Expect = 7.9e-84
Identity = 204/317 (64.35%), Postives = 217/317 (68.45%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGG-RGGRGRGG--GGSGGRGFGGGRGMASRGG-GRGGGRGRG 60
           MRPP    GGG   GRG GG  GGRG GG  GG GG G GGGRG + RGG GRG G  RG
Sbjct: 1   MRPPLTGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRG 60

Query: 61  GGRG-------GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQ 120
           G RG       GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQ
Sbjct: 61  GARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQ 120

Query: 121 NEDGTKIEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP-- 180
           NEDGTK EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP  
Sbjct: 121 NEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEG 180

Query: 181 ---------------------------------------------------------ARI 240
                                                                    ARI
Sbjct: 181 CVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240

Query: 241 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERD 248
           LALNASYFLK+GGHFVISIKANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERD
Sbjct: 241 LALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERD 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy Swiss-Prot
Match: Q9FEF8 (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB1 PE=1 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-83
Identity = 201/309 (65.05%), Postives = 214/309 (69.26%), Query Frame = 0 

Query: 1   MRPP-RGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMAS-RGGGRGGGRGRGGG 60
           MRPP  G  GGGGFRG  DG  GGRG GGG S G G  G RG +  RG GRG  RGRGG 
Sbjct: 1   MRPPVTGGRGGGGFRGGRDG--GGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGP 60

Query: 61  RGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEY 120
             GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK+EY
Sbjct: 61  PRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEY 120

Query: 121 RVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP----------- 180
           RVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP           
Sbjct: 121 RVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSH 180

Query: 181 ------------------------------------------------ARILALNASYFL 240
                                                           ARILALNAS+FL
Sbjct: 181 RSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFL 240

Query: 241 KAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYR 249
           K GGHFVISIKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR
Sbjct: 241 KTGGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYR 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy Swiss-Prot
Match: Q8I1F4 (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.0e-70
Identity = 180/307 (58.63%), Postives = 199/307 (64.82%), Query Frame = 0 

Query: 5   RGRGGGGGFRGRG--DGGRGGRGRGGGGS------GGRGFGGGRGMASRGGGRGGGRGRG 64
           RGRGGGG   GRG   GGRGG GRGGGG       GGRG GGGRG   RGGG  GG GRG
Sbjct: 41  RGRGGGGDRGGRGGFGGGRGGGGRGGGGGGGRGGFGGRGGGGGRGGGGRGGGGRGGGGRG 100

Query: 65  GGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKI 124
           GG  GG KGG  V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+N +G KI
Sbjct: 101 GG-AGGFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKI 160

Query: 125 EYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP--------- 184
           EYRVWNPFRSKLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSDVVGP         
Sbjct: 161 EYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEF 220

Query: 185 --------------------------------------------------ARILALNASY 244
                                                              RI+ALNA +
Sbjct: 221 SHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQH 280

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy Swiss-Prot
Match: Q9W1V3 (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fib PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.5e-70
Identity = 178/307 (57.98%), Postives = 198/307 (64.50%), Query Frame = 0 

Query: 5   RGRGGGGGFRGRG--DGGRGGRGRGGGGSGGRGF------GGGRGMASRGGGRGGGRGRG 64
           RGRGGGG   GRG   GGRGG GRGGGG GGRG       GGGRG   RGGG  GG GRG
Sbjct: 40  RGRGGGGDRGGRGGFGGGRGGGGRGGGGGGGRGAFGGRGGGGGRGGGGRGGGGRGGGGRG 99

Query: 65  GGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKI 124
           GG  GG KGG  V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+  +G KI
Sbjct: 100 GG-AGGFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKI 159

Query: 125 EYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP--------- 184
           EYRVWNPFRSKLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSDVVGP         
Sbjct: 160 EYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEF 219

Query: 185 --------------------------------------------------ARILALNASY 244
                                                              RI+ALNA +
Sbjct: 220 SHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQH 279

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy Swiss-Prot
Match: P22509 (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=1 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 5.5e-69
Identity = 179/304 (58.88%), Postives = 198/304 (65.13%), Query Frame = 0 

Query: 6   GRGGGGGF-RGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGG--RGGGRGRGGGRGG- 65
           GRGG GGF  GRG  G GGRGRGGGG G RG GGG G   RGGG   GGGRGRGGGRGG 
Sbjct: 27  GRGGRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGG---RGGGFQSGGGRGRGGGRGGK 86

Query: 66  -GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 125
            G + G  V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   KIEYR 
Sbjct: 87  RGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRA 146

Query: 126 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 185
           WNPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP             
Sbjct: 147 WNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRS 206

Query: 186 ----------------------------------------------ARILALNASYFLKA 245
                                                          RI+ALNA  FL+ 
Sbjct: 207 GRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRN 266

[Close]
BLAST of Cp4.1LG09g00780 vs. NCBI nr
Match: XP_023542882.1 (mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426 bits (1095), Expect = 2.55e-148
Identity = 248/307 (80.78%), Postives = 248/307 (80.78%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. NCBI nr
Match: XP_022945875.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata] >XP_022968445.1 probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxima] >KAG6574193.1 rRNA 2'-O-methyltransferase fibrillarin 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419 bits (1076), Expect = 1.86e-145
Identity = 246/307 (80.13%), Postives = 246/307 (80.13%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRGFGGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGFGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. NCBI nr
Match: XP_022141240.1 (mediator of RNA polymerase II transcription subunit 36a-like [Momordica charantia])

HSP 1 Score: 414 bits (1065), Expect = 8.77e-144
Identity = 243/307 (79.15%), Postives = 245/307 (79.80%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRG GGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGGGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRV
Sbjct: 61  GGMKGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. NCBI nr
Match: XP_023552409.1 (mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412 bits (1058), Expect = 1.02e-142
Identity = 243/307 (79.15%), Postives = 244/307 (79.48%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRG GGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGGGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. NCBI nr
Match: XP_008439295.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis melo])

HSP 1 Score: 409 bits (1051), Expect = 1.23e-141
Identity = 242/307 (78.83%), Postives = 243/307 (79.15%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRG GGGRGM SRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGGGGGRGMQSRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTKIEYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy TrEMBL
Match: A0A6J1HX74 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111467690 PE=3 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 8.98e-146
Identity = 246/307 (80.13%), Postives = 246/307 (80.13%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRGFGGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGFGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy TrEMBL
Match: A0A6J1G280 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita moschata OX=3662 GN=LOC111449984 PE=3 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 8.98e-146
Identity = 246/307 (80.13%), Postives = 246/307 (80.13%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRGFGGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGFGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy TrEMBL
Match: A0A6J1CHH3 (mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charantia OX=3673 GN=LOC111011688 PE=3 SV=1)

HSP 1 Score: 414 bits (1065), Expect = 4.25e-144
Identity = 243/307 (79.15%), Postives = 245/307 (79.80%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRG GGGRGMASRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGGGGGRGMASRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRV
Sbjct: 61  GGMKGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy TrEMBL
Match: A0A1S3AY25 (mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=3656 GN=LOC103484122 PE=3 SV=1)

HSP 1 Score: 409 bits (1051), Expect = 5.95e-142
Identity = 242/307 (78.83%), Postives = 243/307 (79.15%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRG GGGRGM SRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGGGGGRGMQSRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTKIEYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. ExPASy TrEMBL
Match: A0A6J1JA27 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111483086 PE=3 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 1.30e-140
Identity = 242/307 (78.83%), Postives = 243/307 (79.15%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMASRGGGRGGGRGRGGGRG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG  GRG GGGRGM SRGGGRGGGRGRGGGRG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGG--GRGGGGGRGM-SRGGGRGGGRGRGGGRG 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRV 120
           GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRV
Sbjct: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP------------- 180
           WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP             
Sbjct: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180

Query: 181 ----------------------------------------------ARILALNASYFLKA 240
                                                         ARILALNASYFLKA
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 248
           GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP
Sbjct: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP 300

[Close]
BLAST of Cp4.1LG09g00780 vs. TAIR 10
Match: AT4G25630.1 (fibrillarin 2 )

HSP 1 Score: 311.6 bits (797), Expect = 5.6e-85
Identity = 204/317 (64.35%), Postives = 217/317 (68.45%), Query Frame = 0 

Query: 1   MRPPRGRGGGGGFRGRGDGG-RGGRGRGG--GGSGGRGFGGGRGMASRGG-GRGGGRGRG 60
           MRPP    GGG   GRG GG  GGRG GG  GG GG G GGGRG + RGG GRG G  RG
Sbjct: 1   MRPPLTGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRG 60

Query: 61  GGRG-------GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQ 120
           G RG       GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQ
Sbjct: 61  GARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQ 120

Query: 121 NEDGTKIEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP-- 180
           NEDGTK EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP  
Sbjct: 121 NEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEG 180

Query: 181 ---------------------------------------------------------ARI 240
                                                                    ARI
Sbjct: 181 CVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240

Query: 241 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERD 248
           LALNASYFLK+GGHFVISIKANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERD
Sbjct: 241 LALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERD 300

[Close]
BLAST of Cp4.1LG09g00780 vs. TAIR 10
Match: AT5G52470.1 (fibrillarin 1 )

HSP 1 Score: 310.8 bits (795), Expect = 9.6e-85
Identity = 201/309 (65.05%), Postives = 214/309 (69.26%), Query Frame = 0 

Query: 1   MRPP-RGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMAS-RGGGRGGGRGRGGG 60
           MRPP  G  GGGGFRG  DG  GGRG GGG S G G  G RG +  RG GRG  RGRGG 
Sbjct: 1   MRPPVTGGRGGGGFRGGRDG--GGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGP 60

Query: 61  RGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEY 120
             GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK+EY
Sbjct: 61  PRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEY 120

Query: 121 RVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP----------- 180
           RVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP           
Sbjct: 121 RVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSH 180

Query: 181 ------------------------------------------------ARILALNASYFL 240
                                                           ARILALNAS+FL
Sbjct: 181 RSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFL 240

Query: 241 KAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYR 249
           K GGHFVISIKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR
Sbjct: 241 KTGGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYR 300

[Close]
BLAST of Cp4.1LG09g00780 vs. TAIR 10
Match: AT5G52490.1 (Fibrillarin family protein )

HSP 1 Score: 235.7 bits (600), Expect = 3.9e-62
Identity = 152/287 (52.96%), Postives = 177/287 (61.67%), Query Frame = 0 

Query: 24  RGRGGGGSGGRGFG-GGRGMASRGGGRGG--GRGRGGGR-----GGGMKGGSKVVVEPHR 83
           RGRGGG  GGRG   GG G A RG GRGG  GRGRG GR      GG+KGGSKV+V PHR
Sbjct: 6   RGRGGGVRGGRGLARGGEGSAVRGSGRGGESGRGRGPGRVKSESDGGIKGGSKVLVTPHR 65

Query: 84  HEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSKLAAAVLGG 143
           H G+F+AK K DALVTKN+V GE +YNEKRI VQNED + +EYRVWNP RSKLA A+  G
Sbjct: 66  HAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHRSKLADAITTG 125

Query: 144 VDDIWIKPGARVLYLGAASGTTVSHVSDVVGP---------------------------- 203
           VD+IWIKPG +VLYLGA+SG TVSHVSD+VGP                            
Sbjct: 126 VDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICGKVLMNMAEKRTNVI 185

Query: 204 -------------------------------ARILALNASYFLKAGGHFVISIKANCIDS 244
                                          A IL+LNASYFLK+GGHF+ISIKAN IDS
Sbjct: 186 PIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMISIKANSIDS 245

[Close]
BLAST of Cp4.1LG09g00780 vs. TAIR 10
Match: AT5G52470.2 (fibrillarin 1 )

HSP 1 Score: 206.5 bits (524), Expect = 2.6e-53
Identity = 133/169 (78.70%), Postives = 143/169 (84.62%), Query Frame = 0 

Query: 1   MRPP-RGRGGGGGFRGRGDGGRGGRGRGGGGSGGRGFGGGRGMAS-RGGGRGGGRGRGGG 60
           MRPP  G  GGGGFRG  DG  GGRG GGG S G G  G RG +  RG GRG  RGRGG 
Sbjct: 1   MRPPVTGGRGGGGFRGGRDG--GGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGP 60

Query: 61  RGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEY 120
             GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK+EY
Sbjct: 61  PRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEY 120

Query: 121 RVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP 168
           RVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP
Sbjct: 121 RVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGP 167

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g00780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94AH97.9e-8464.35rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB... [more]
Q9FEF81.4e-8365.05rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB... [more]
Q8I1F41.0e-7058.63rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3... [more]
Q9W1V38.5e-7057.98rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster OX=7227 GN=Fi... [more]
P225095.5e-6958.88rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=... [more]
BLAST of Cp4.1LG09g00780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023542882.12.55e-14880.78mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo sub... [more]
XP_022945875.11.86e-14580.13probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita mosc... [more]
XP_022141240.18.77e-14479.15mediator of RNA polymerase II transcription subunit 36a-like [Momordica charanti... [more]
XP_023552409.11.02e-14279.15mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo sub... [more]
XP_008439295.11.23e-14178.83PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis... [more]
BLAST of Cp4.1LG09g00780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HX748.98e-14680.13probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma... [more]
A0A6J1G2808.98e-14680.13probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita mo... [more]
A0A6J1CHH34.25e-14479.15mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charan... [more]
A0A1S3AY255.95e-14278.83mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=... [more]
A0A6J1JA271.30e-14078.83probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma... [more]
BLAST of Cp4.1LG09g00780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G25630.15.6e-8564.35fibrillarin 2 [more]
AT5G52470.19.6e-8565.05fibrillarin 1 [more]
AT5G52490.13.9e-6252.96Fibrillarin family protein [more]
AT5G52470.22.6e-5378.70fibrillarin 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000692FibrillarinPRINTSPR00052FIBRILLARINcoord: 89..108
score: 64.29
coord: 117..136
score: 75.71
coord: 144..165
score: 79.22
IPR000692FibrillarinSMARTSM01206Fibrillarin_2coord: 71..240
e-value: 2.7E-93
score: 325.9
IPR000692FibrillarinPFAMPF01269Fibrillarincoord: 168..239
e-value: 2.2E-25
score: 89.1
coord: 71..167
e-value: 5.8E-40
score: 136.8
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 122..167
e-value: 5.6E-22
score: 80.1
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 168..240
e-value: 4.0E-23
score: 83.9
NoneNo IPR availableGENE3D3.30.200.20Phosphorylase Kinase; domain 1coord: 66..121
e-value: 1.4E-29
score: 103.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availablePANTHERPTHR10335:SF22FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATEDcoord: 168..247
NoneNo IPR availablePANTHERPTHR10335RRNA 2-O-METHYLTRANSFERASE FIBRILLARINcoord: 168..247
NoneNo IPR availablePANTHERPTHR10335:SF22FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATEDcoord: 4..168
NoneNo IPR availablePANTHERPTHR10335RRNA 2-O-METHYLTRANSFERASE FIBRILLARINcoord: 4..168
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 71..238

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g00780.1Cp4.1LG09g00780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000494 box C/D RNA 3'-end processing
biological_process GO:0031122 cytoplasmic microtubule organization
biological_process GO:1990258 histone glutamine methylation
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0007020 microtubule nucleation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0031167 rRNA methylation
biological_process GO:0051225 spindle assembly
biological_process GO:0006364 rRNA processing
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0000930 gamma-tubulin complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0000923 equatorial microtubule organizing center
cellular_component GO:0031428 box C/D RNP complex
molecular_function GO:0043015 gamma-tubulin binding
molecular_function GO:1990259 histone-glutamine methyltransferase activity
molecular_function GO:0051011 microtubule minus-end binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008649 rRNA methyltransferase activity
molecular_function GO:0008168 methyltransferase activity