Cp4.1LG09g00430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG09g00430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA polymerase sigma factor
Location	Cp4.1LG09: 244032 .. 248126 (-)
RNA-Seq Expression	Cp4.1LG09g00430
Synteny	Cp4.1LG09g00430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGTGGATTGATCACAAGGCCCTGCTATCGCAGTCCATTTCTGTCGAATAAAAAGTGAGATTGTTTTGTGGACACAAAAATTCATGTATTTAGTAGACTGTCATTTTAAGCTTGTTCCCTCTGATTCTGGGAGCCCCAAAGGAAATATTGAAGGAAAACAAAATTGTGCTTTACCTTGGTCTTTGAAGGTTTGTGTTTCTCAACTTGGATTTCTTTTTCTGTTTGTATTAGTTGAATCTTTGAAGAATCTTGTTGTTCTTTGTGGGAAAATCGGGAACTCCTTCAAAAAAGTGCTTTTAGTTGCAAATGGTTGAACTTTTGTGTGTTTTTTTATCATCGTCTTTCAGTTTAGGATCCCCCACAACAAACCCACATGAGTAAACAAGTAAAGTTTCAAGCTTTGTAATCCTACCTTCTTGAAGTTACTTGTAAGGAAAATGTTTGTAGCCATGTCCTAAACTTGAAAAATGGTAGCTATTTCTAAAGGTGAATGCACCGATAGGGATGCTTCTAAGATTTATGCTAACCACTTGTTTGATGAATTGCCCATGAGGGAGAATGAAGATTTTTGGCCAATGCATACTTGAAGTACAGGATTAGAGTGATAAGAGATACATTTACCATTTATTTGCAGGTTGCAGGAGCTTCTATATTGATTTCTTTTGCTGTTCTGAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGCGCAATATTCTCCAATCACAATTCGTCATCGAAAAGACCATCGATTGTTGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGATGAAGCTACTCCCTGCACTTGGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAGGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGACAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACTGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGTAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGTGAGGCTTAGGAATTCTGATGTTGTAAACAAATTTGAATGAAACTATGAAAAGTTATCATTCTTGTTCACTGCCAAATAACGTTTTCCTCTGTTAGGAACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGGTAAGAGTGGCTTCCTTCCACAATTAAAGCATTATTGCTTCAGGCTTCTCTGATAACACGTCAGAAATATAATGGCATACAAGAATGTGACCAAGTTGTGAAAAGGGTGGAACTAATGATTAGATTTTACATCTGTTGCAGCATAATCTTCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAACTGGTCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAACCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCAATGACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTTGGTTCTTAATCCACTTTGGCTTTTTCATTCCTTCATTTTCTGTAAGGAAATGGATTGCTTGCGTTCATTAATCATCATTATGCTTTTCTTCATCACATCATACTGTTGTTGCTGTATTGAACAACCAAAGAAGTTGTCACCTTAAACAGAGAAGAAACAAAGAGCAATAGAATAAGGGAATATGTAGACTTTGAAGGAAACCTAAAAGTTCATATTGAGAGCATGATCTTGACATCTCTAAGATTCTAGCCACTGTCTAAAGGGGAAGGAAGGTTCTCTTTCCATCTAGTTGTAATTCAAAGAAGCAAGTTTACCACTCTAAGTTTAGAAGCTCTGCATTTGAACAAACTGAAATAGCAAAAAATCACGCTAGAGTAGCTGGATACTCAAGGAAGCAAGCCATAAATCATCTAGCGACCATTTGAGGTAGACTGCAAGAGTTTTTGAGAGATTCATATTCACATCATAAACAGTTGAATAGATTCTGTTCACTTTGTTATGTTTTGAATCTAAAACATCGTCTAAACGATACTTGGTGCACATGATGGCATGGATTATTGAGATTGGACCTTTACTTAGTGCAGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAGGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGGTAATGTCTCCGTTCAAATCTTGCAGCATGTCCCTTTTCCCTCCAAACCACTACGTTAATCTTCTTTGATAATTTCTTAGCTTTTGAACATAGCCGGAGATATATCTCATCTTTGCTTCCATGATTTAACTTGTGAAATATATTTGGTAAAATGTCTTTTCATCATGAATGCTTGGTTAAAGGCATCGTAGCAGTATGGCACACACTGCTTTGCTTGTTTTAGATGCAACTCATTTGCTCCGCACTACACTTATTTGTCCAAAATCAACGTAAAAGTAGTCTATTTGTAACAACCAAGGCCACCGTTAGCAGATATTGTTCTCTTTGGGCTTTCTCTTTTGGGCTTCCCCTCAAGGATTTAAAACGCTTGTACTATAGAAAGGTTTCCACACCCTTATAAGGAATGCTTCGTTACCCTCTCCAACCAATGTGGAATCTCACAATCCACCCCCTTGGGGGCCCAGCGTCCTAGCTGGCACACCATTTGGTGCCTAACTCTGATACCTGTCTCTAACATACGCGTTTTAAAATCTTGAGGGGAAGCCCTTGAAGGGAAATCACAAAGAGGACAATATCTGCTAGCTACGGGCTCGGGCTGTTAGACTGTTAGACTTGCATGGACTTTCCTTTTGGTAGATTTCGTAGGCATTCCTGACTTGGGATTACTTTGAACTCAAATGGTTCTTCATATCAGTGGATAGTAGCTGTCCTTTCTGCTGCATCATTTGATGGAATGCTTAGAAATGGCGTATTCTGCTGATATTTATAATTCTTGATGACCTGATCCTAGAACTGTCTTCCAGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTTGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGAATCGATGAGAACCTCATGCTTTGTTTCAATGATCTTGTAGTCTGCATAATTTCTTATGGCCAAAACATCTCAAGGAGCAAGAGATTTGTACCATATATTTGTAACTATGATTCATATTTTGCAGTACATTCAATTGGCAGATCTGCTACTTGTAGGCACAAGGGAGTTTGATAGGAGAAGAATAGCAATTAAAACACAGGAATGGTTGTACCTTTGTATACATATATGTGATAAAAATATCTTATACTG

mRNA sequence

CACCGTGGATTGATCACAAGGCCCTGCTATCGCAGTCCATTTCTGTCGAATAAAAAGTGAGATTGTTTTGTGGACACAAAAATTCATGTATTTAGTAGACTGTCATTTTAAGCTTGTTCCCTCTGATTCTGGGAGCCCCAAAGGAAATATTGAAGGAAAACAAAATTGTGCTTTACCTTGGTCTTTGAAGGTTGCAGGAGCTTCTATATTGATTTCTTTTGCTGTTCTGAAGGCTACTTGGTATGGGAGTTGTGACTGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGCGCAATATTCTCCAATCACAATTCGTCATCGAAAAGACCATCGATTGTTGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGATGAAGCTACTCCCTGCACTTGGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAGGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGACAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACTGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGTAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGAACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGCATAATCTTCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAACTGGTCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAACCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCAATGACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAGGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTTGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGAATCGATGAGAACCTCATGCTTTGTTTCAATGATCTTGTAGTCTGCATAATTTCTTATGGCCAAAACATCTCAAGGAGCAAGAGATTTGTACCATATATTTGTAACTATGATTCATATTTTGCAGTACATTCAATTGGCAGATCTGCTACTTGTAGGCACAAGGGAGTTTGATAGGAGAAGAATAGCAATTAAAACACAGGAATGGTTGTACCTTTGTATACATATATGTGATAAAAATATCTTATACTG

Coding sequence (CDS)

ATGGGAGTTGTGACTGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGCGCAATATTCTCCAATCACAATTCGTCATCGAAAAGACCATCGATTGTTGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAACAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGATGAAGCTACTCCCTGCACTTGGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAGGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGACAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACTGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGTAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGAACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGCATAATCTTCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAACTGGTCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAACCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCAATGACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAGGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTTGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGA

Protein sequence

MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNNRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVSEADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI

Homology

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BLAST of Cp4.1LG09g00430 vs. ExPASy Swiss-Prot
Match: Q9ZNX9 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIGE PE=1 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 1.7e-165
Identity = 317/517 (61.32%), Postives = 397/517 (76.79%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTL-VSPHEQVILPVES 60
           MGVV++SSSAARSPL LG     H SS K+PSIVAFK D  +++ L + P EQV++P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRNQKR--SGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTE---DT 120
           +N  ++     K  K+ K+  ++  + A  C+  VDY EAAA+LE+I+KLS  T    + 
Sbjct: 61  HNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVED 120

Query: 121 DVECEDGRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRK 180
           DVE    + K  ++R++K        +VRN+ ++ KR+ LDKRIALK N ++K   +   
Sbjct: 121 DVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVD 180

Query: 181 QKDT--VSEADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQ 240
           +K T    E ++ + LVR+Y AS D+VSLDWKKMKIPPVLSS+EH  LFKL+QPMK L++
Sbjct: 181 KKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLE 240

Query: 241 VQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE 300
           V++ LQK LGREP E E+    NM   +V++++E+GRAARN LIKHNLRLVLFV+NKYF 
Sbjct: 241 VKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFH 300

Query: 301 DFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSF 360
           +F  GPKFQDLCQAG++GL+TAIDRFEPKR+FRLSTY LFWIRHAIIRSMT S+FTRV F
Sbjct: 301 EFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPF 360

Query: 361 GLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTT 420
           GL+SVRV+I +AK EL  E  R PTE+E++ ++ I+PERY EV+RA KPV SL+S+HS T
Sbjct: 361 GLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVT 420

Query: 421 SEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGE 480
            EEFIN ITDV+G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGE
Sbjct: 421 QEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 480

Query: 481 IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI 510
           IAGNLNISREMVRKHEVKALMKLKH ARVDYLR++++
Sbjct: 481 IAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517

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BLAST of Cp4.1LG09g00430 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.1e-38
Identity = 113/359 (31.48%), Postives = 194/359 (54.04%), Query Frame = 0


Query: 153 DLDKRIALKSNKED-KATPSLRKQKDTVSEADE-TDDLVRNYPASTDMVSLDWKKMKIPP 212
           D+D+ +  +++++D K+  + + ++ T S+    T+D +R Y      + L         
Sbjct: 44  DIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRL--------- 103

Query: 213 VLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRA 272
            L + E   L + +  + EL +V+E L ++L R+P + E  +A  + +   R +L +GR 
Sbjct: 104 -LRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRR 163

Query: 273 ARNNLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYA 332
           A++ +++ NLRLV+ +  KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA
Sbjct: 164 AKDKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 223

Query: 333 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISP 392
            +WIR AI R++   S T R+   L      I++    LS E  R PTEEEI  ++ ++ 
Sbjct: 224 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 283

Query: 393 ERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLK 452
           E+   + ++ +   SL +      +  +    + +G   ++Q    LLR  L+ VLDSL 
Sbjct: 284 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLS 343

Query: 453 PKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL 509
           P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Sbjct: 344 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

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BLAST of Cp4.1LG09g00430 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-33
Identity = 119/403 (29.53%), Postives = 198/403 (49.13%), Query Frame = 0


Query: 107 LSSVTEDTDVECEDGRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKED 166
           ++  TE  D   +    K ++  RKK        +V   T      D+D      S  ED
Sbjct: 16  MTQATELLDPALKPAETKAKRSSRKKAT----TAVVEPATTIAPTADVDAIDDEDSVGED 75

Query: 167 KATPSLRKQKDTVSEADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQP 226
           +   +  K K        T+D +R Y      + L          L + E   L + +  
Sbjct: 76  EDAAAKAKAK---VRKTYTEDSIRLYLQEIGRIRL----------LRADEEIELARQIAD 135

Query: 227 MKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFV 286
           +  L ++++EL ++L R P++ E   A +  + + RR+L  GR A++ +++ NLRLV+ +
Sbjct: 136 LLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSI 195

Query: 287 INKYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSS 346
             KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA +WIR AI R++   S
Sbjct: 196 AKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 255

Query: 347 FT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSL 406
            T R+   L      I++    LS E  R PTEEEI  ++ ++ E+   + ++ +   SL
Sbjct: 256 RTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISL 315

Query: 407 HSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGK 466
            +      +  +    + +G   +++    LLR  L+ VL +L P+E  V+R RYGLD  
Sbjct: 316 ETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDG 375

Query: 467 GNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL 509
             +TL EI    N++RE +R+ E KAL KL+HP R   L+ ++
Sbjct: 376 RMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.9e-33
Identity = 115/401 (28.68%), Postives = 187/401 (46.63%), Query Frame = 0


Query: 153 DLDKRIALKSNKEDKATPSLRKQKDTVSEADETDDLVRNYPASTDMVSLDWKKMKIPPVL 212
           DL++ +A    KE K     + +KD V +   T+D +R Y      + L          L
Sbjct: 40  DLEQEVAATEGKEKKVR---KIRKDAVKKKPYTEDSIRIYLQEIGRIRL----------L 99

Query: 213 SSSEHTRLFKLVQPMKELIQVQEELQKELGREPT-------------------------- 272
            + E   L + +  + EL  +++ L  +L R+P+                          
Sbjct: 100 RAEEEIELARQIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEP 159

Query: 273 ------------------EGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVIN 332
                             E E     N N    RR+L + R A++ +++ NLRLV+ +  
Sbjct: 160 KKKDIDSYLANPDNELSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAK 219

Query: 333 KYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFT 392
           KY      G  FQDL Q G  GL+ A ++F+ ++ ++ STYA +WIR AI R++   S T
Sbjct: 220 KYMN---RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 279

Query: 393 -RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHS 452
            R+   L      I++    LS E  R PTEEEI  K+ ++ E+   + ++ +   SL +
Sbjct: 280 IRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLET 339

Query: 453 RHSTTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGN 509
                 +  +    + +G   +++    LLR  L++VLD+L P+E  V+R RYGLD    
Sbjct: 340 PIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRM 399

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-32
Identity = 88/248 (35.48%), Postives = 140/248 (56.45%), Query Frame = 0


Query: 262 RRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPK 321
           +R+L  GR A+  +++ NLRLV+ +  KY      G  FQDL Q G  GL+ A ++F+ +
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMN---RGLSFQDLIQEGSLGLIRAAEKFDHE 230

Query: 322 RRFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEE 381
           + ++ STYA +WIR AI R++   S T R+   L      I++    LS E  R PTEEE
Sbjct: 231 KGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEE 290

Query: 382 IIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLA 441
           I  K+ ++ E+   + ++ +   SL +      +  +    + +G   +++    LLR  
Sbjct: 291 IATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLRED 350

Query: 442 LDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 501
           L++VLD+L P+E  V+R RYGLD    +TL EI    N++RE +R+ E KAL KL+HP R
Sbjct: 351 LENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 410

Query: 502 VDYLRRHL 509
              L+ ++
Sbjct: 411 NSILKEYI 415

[Close]

BLAST of Cp4.1LG09g00430 vs. NCBI nr
Match: XP_023543020.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 981 bits (2535), Expect = 0.0
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED
Sbjct: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509

[Close]

BLAST of Cp4.1LG09g00430 vs. NCBI nr
Match: XP_022968276.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022968277.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022968278.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 957 bits (2474), Expect = 0.0
Identity = 500/509 (98.23%), Postives = 503/509 (98.82%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHNSS KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNSS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKRSGKTSKSLKRVKAVFIDEATPCT DVDYYEAAAKLENIFKLSSVTEDTD+ECED
Sbjct: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDLECED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KA PSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYP STDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPVSTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Cp4.1LG09g00430 vs. NCBI nr
Match: KAG6574228.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013296.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 955 bits (2469), Expect = 0.0
Identity = 500/509 (98.23%), Postives = 502/509 (98.62%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHN S KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKRSGKTSKSLKRVKAVFI EATPCT DVDYYEAAAKLENIFKLSSVTEDTDVECED
Sbjct: 61  NRNQKRSGKTSKSLKRVKAVFIGEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KATPSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYPASTDM SLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Cp4.1LG09g00430 vs. NCBI nr
Match: XP_022945188.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_022945189.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_022945190.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 954 bits (2465), Expect = 0.0
Identity = 499/509 (98.04%), Postives = 502/509 (98.62%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHN S KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           +RNQKRSGKTSKSLKRVKAVFIDEATPCT DVDYYEAAAKLENIFKLSSVTEDTDVECED
Sbjct: 61  SRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KATPSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYPASTDM SLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Cp4.1LG09g00430 vs. NCBI nr
Match: XP_038903010.1 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida] >XP_038903018.1 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 867 bits (2240), Expect = 6.04e-315
Identity = 455/509 (89.39%), Postives = 476/509 (93.52%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSP RLGA F+NHNS+ KRPSIVAFK DKHT+TTLVSPHEQV LPVESN
Sbjct: 1   MGVVTVSSSAARSPFRLGAKFTNHNSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           N N+KRSGKTSK LKRVKAV IDEATPCT DVDY EAAAKLENIFKLS VTEDTD+E +D
Sbjct: 61  NINKKRSGKTSKPLKRVKAVLIDEATPCTLDVDYNEAAAKLENIFKLSPVTEDTDMESKD 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GR KR QQRRKK DKR  DGIVRN T+RIKRLDLDKRIAL+SNKE KA PSLRKQKDT +
Sbjct: 121 GRSKRGQQRRKKSDKRQSDGIVRNQTKRIKRLDLDKRIALRSNKEGKAAPSLRKQKDTKN 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           E DE D LVR+Y ASTD+VSLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQVQEELQKE
Sbjct: 181 EDDEIDCLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGEL + TNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELANVTNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKR+FRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV+
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQ+AKLELSCE HRLPTEEEIIAKVGISPERYLEVMRA KPVYSLHS+HSTTSEEFIN I
Sbjct: 361 IQKAKLELSCELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSKHSTTSEEFINGI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDN+RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRR+L+
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRYLV 509

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy TrEMBL
Match: A0A6J1HXK0 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467558 PE=3 SV=1)

HSP 1 Score: 957 bits (2474), Expect = 0.0
Identity = 500/509 (98.23%), Postives = 503/509 (98.82%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHNSS KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNSS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKRSGKTSKSLKRVKAVFIDEATPCT DVDYYEAAAKLENIFKLSSVTEDTD+ECED
Sbjct: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDLECED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KA PSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKAAPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYP STDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPVSTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy TrEMBL
Match: A0A6J1G085 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111449507 PE=3 SV=1)

HSP 1 Score: 954 bits (2465), Expect = 0.0
Identity = 499/509 (98.04%), Postives = 502/509 (98.62%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAARSPLRLGAIFSNHN S KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN
Sbjct: 1   MGVVTVSSSAARSPLRLGAIFSNHNLS-KRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           +RNQKRSGKTSKSLKRVKAVFIDEATPCT DVDYYEAAAKLENIFKLSSVTEDTDVECED
Sbjct: 61  SRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKRRQQRRKKPDKRP DGIVRNHTRRIKRLDLDKRIALKSNKE KATPSLRKQKDTVS
Sbjct: 121 GRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADETDDLVRNYPASTDM SLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE
Sbjct: 181 EADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRS+TLSSFTRVSFGLDSVRVD
Sbjct: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVD 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI
Sbjct: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
           TDVE TGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 TDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRRHLI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 508

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy TrEMBL
Match: A0A6J1E518 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 864 bits (2233), Expect = 3.43e-314
Identity = 456/509 (89.59%), Postives = 475/509 (93.32%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAAR+P RLG  FSN+ S+ KRPSIVAFKVDKHT+TTLVSPHEQV LPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKR+GK+SKSLKRVKAV IDEATPCT DVDY EAAAKLENIFKLS VTEDTD+E ED
Sbjct: 61  NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKR QQRRKK  KRP DG+VRN T+RIKRLDLDKRIALKSNKE K+ PSL KQKDT S
Sbjct: 121 GRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTKS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADE DDLVRNY ASTD+VSLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQ QEELQK 
Sbjct: 181 EADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKG 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV+
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLEL CE HRLPTEEE+IAKVGISPERYLEVMRA KPVYSLHSRHSTTSEEFI+ I
Sbjct: 361 IQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
            DVEGTGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 ADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRR+LI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRYLI 509

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy TrEMBL
Match: A0A6J1E9R5 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430670 PE=3 SV=1)

HSP 1 Score: 864 bits (2233), Expect = 4.60e-314
Identity = 456/509 (89.59%), Postives = 475/509 (93.32%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAAR+P RLG  FSN+ S+ KRPSIVAFKVDKHT+TTLVSPHEQV LPVESN
Sbjct: 9   MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN 68

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKR+GK+SKSLKRVKAV IDEATPCT DVDY EAAAKLENIFKLS VTEDTD+E ED
Sbjct: 69  NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENED 128

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKR QQRRKK  KRP DG+VRN T+RIKRLDLDKRIALKSNKE K+ PSL KQKDT S
Sbjct: 129 GRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKDTKS 188

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADE DDLVRNY ASTD+VSLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQ QEELQK 
Sbjct: 189 EADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKG 248

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 249 LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 308

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV+
Sbjct: 309 QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 368

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLEL CE HRLPTEEE+IAKVGISPERYLEVMRA KPVYSLHSRHSTTSEEFI+ I
Sbjct: 369 IQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGI 428

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
            DVEGTGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 429 ADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 488

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRR+LI
Sbjct: 489 REMVRKHEVKALMKLKHPARVDYLRRYLI 517

[Close]

BLAST of Cp4.1LG09g00430 vs. ExPASy TrEMBL
Match: A0A6J1J8N6 (RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482757 PE=3 SV=1)

HSP 1 Score: 862 bits (2226), Expect = 3.97e-313
Identity = 455/509 (89.39%), Postives = 474/509 (93.12%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESN 60
           MGVVTVSSSAAR+P RLG  FSN+ S+SKRPSIVAFKVDKHT+ TLVSPHEQV LPVESN
Sbjct: 1   MGVVTVSSSAARTPFRLGGKFSNNISASKRPSIVAFKVDKHTNATLVSPHEQVTLPVESN 60

Query: 61  NRNQKRSGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTEDTDVECED 120
           NRNQKR+GKTSKSLKRVKAV IDEATPCT DVDY EAAAKLENIFKLS VTEDTD+E ED
Sbjct: 61  NRNQKRTGKTSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENED 120

Query: 121 GRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRKQKDTVS 180
           GRPKR QQRRKK  KRP DG+VRN T+RIKRLDLD+RIALKSNKE K+ PSL  QKDT S
Sbjct: 121 GRPKRVQQRRKKLGKRPCDGVVRNQTKRIKRLDLDRRIALKSNKEGKSAPSLSIQKDTKS 180

Query: 181 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 240
           EADE DDLVRNY ASTD+VSLDWKKMKIPPVL SSEHTRLFKLVQPMK LIQ QEELQK 
Sbjct: 181 EADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKG 240

Query: 241 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 300
           LGREPTEGEL +ATNMNVIQVRRQLEVGRAARN LIKHNLRLVLFVINKYFEDFA+GPKF
Sbjct: 241 LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF 300

Query: 301 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVD 360
           QDLCQAGVKGL+TAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRV+
Sbjct: 301 QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE 360

Query: 361 IQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAI 420
           IQRAKLEL CE HRLPTEEE+IAKVGISPERYLEVMRA KPVYSLHSRHSTTSEEFI+ I
Sbjct: 361 IQRAKLELLCELHRLPTEEEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGI 420

Query: 421 TDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480
            DVEGTGGDN+RQ ALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
Sbjct: 421 ADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS 480

Query: 481 REMVRKHEVKALMKLKHPARVDYLRRHLI 509
           REMVRKHEVKALMKLKHPARVDYLRR+LI
Sbjct: 481 REMVRKHEVKALMKLKHPARVDYLRRYLI 509

[Close]

BLAST of Cp4.1LG09g00430 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 583.9 bits (1504), Expect = 1.2e-166
Identity = 317/517 (61.32%), Postives = 397/517 (76.79%), Query Frame = 0


Query: 1   MGVVTVSSSAARSPLRLGAIFSNHNSSSKRPSIVAFKVDKHTDTTL-VSPHEQVILPVES 60
           MGVV++SSSAARSPL LG     H SS K+PSIVAFK D  +++ L + P EQV++P E 
Sbjct: 1   MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK 60

Query: 61  NNRNQKR--SGKTSKSLKRVKAVFIDEATPCTWDVDYYEAAAKLENIFKLSSVTE---DT 120
           +N  ++     K  K+ K+  ++  + A  C+  VDY EAAA+LE+I+KLS  T    + 
Sbjct: 61  HNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVED 120

Query: 121 DVECEDGRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLRK 180
           DVE    + K  ++R++K        +VRN+ ++ KR+ LDKRIALK N ++K   +   
Sbjct: 121 DVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVD 180

Query: 181 QKDT--VSEADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQ 240
           +K T    E ++ + LVR+Y AS D+VSLDWKKMKIPPVLSS+EH  LFKL+QPMK L++
Sbjct: 181 KKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLE 240

Query: 241 VQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFE 300
           V++ LQK LGREP E E+    NM   +V++++E+GRAARN LIKHNLRLVLFV+NKYF 
Sbjct: 241 VKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFH 300

Query: 301 DFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSF 360
           +F  GPKFQDLCQAG++GL+TAIDRFEPKR+FRLSTY LFWIRHAIIRSMT S+FTRV F
Sbjct: 301 EFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPF 360

Query: 361 GLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTT 420
           GL+SVRV+I +AK EL  E  R PTE+E++ ++ I+PERY EV+RA KPV SL+S+HS T
Sbjct: 361 GLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVT 420

Query: 421 SEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGE 480
            EEFIN ITDV+G G +N RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG+RTLGE
Sbjct: 421 QEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 480

Query: 481 IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI 510
           IAGNLNISREMVRKHEVKALMKLKH ARVDYLR++++
Sbjct: 481 IAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV 517

[Close]

BLAST of Cp4.1LG09g00430 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 132.5 bits (332), Expect = 9.6e-31
Identity = 109/391 (27.88%), Postives = 193/391 (49.36%), Query Frame = 0


Query: 126 RQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALKSNKEDKATPSLR-----KQKDTVS 185
           +Q+  +  +++P   +    TR+ +R     R A    K     PS++     K+K  V+
Sbjct: 195 KQEEVELLEEQPSVSLAVRSTRQTER---KARRAKGLEKTASGIPSVKTGSSPKKKRLVA 254

Query: 186 EADETDDLVRNYPASTDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKE 245
           +  + +D +R    +T    L          L+  E   L   +Q + +L ++Q EL + 
Sbjct: 255 QEVDHNDPLRYLRMTTSSSKL----------LTVREEHELSAGIQDLLKLERLQTELTER 314

Query: 246 LGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKF 305
            GR+PT  +   A  ++   +R+++  G   ++ +IK N+RLV+ +   Y      G   
Sbjct: 315 SGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNY---QGAGMNL 374

Query: 306 QDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSMT-LSSFTRVSFGLDSVRV 365
           QDL Q G +GL+   ++F+  + F+ STYA +WI+ A+ +S++  S   R+ F +     
Sbjct: 375 QDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATY 434

Query: 366 DIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSE-EFIN 425
            ++ A+ +L  E  + P  EEI    G+S +R + V+ + KP  SL  +       +   
Sbjct: 435 RVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSE 494

Query: 426 AITDVEGTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN 485
            I D E    ++      +R  LD VLDSL  +E  VIR R+G++    +TL EI   + 
Sbjct: 495 VIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMG 554

Query: 486 ISREMVRKHEVKALMKLKHPARVDYLRRHLI 510
           +SRE VR+ E  A  KLK+  R ++L+++L+
Sbjct: 555 VSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Cp4.1LG09g00430 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-28
Identity = 102/366 (27.87%), Postives = 186/366 (50.82%), Query Frame = 0


Query: 137 PGDGIVRNHTRRIKRLDLDKRIALKSNKEDKA-TPSLRKQKDTVSEADETDDLVRNYPAS 196
           P  G +    R+++R   ++R    ++ +D+   P     K    +  + DD ++ +   
Sbjct: 182 PEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWG 241

Query: 197 TDMVSLDWKKMKIPPVLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATN 256
            +   L          L++ E   L   +Q + +L +V+ +L+ + G EPT GE  +A  
Sbjct: 242 PETKQL----------LTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMG 301

Query: 257 MNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLMTAI 316
           ++   ++  +  GR++R  LI  NLRLV+ +  +Y      G  FQDL Q G  GLM ++
Sbjct: 302 ISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQN---RGLNFQDLLQEGSMGLMKSV 361

Query: 317 DRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHR 376
           ++F+P+   R +TYA +WIR +I +S+  +S T R+   +  +   +  A+     E + 
Sbjct: 362 EKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNY 421

Query: 377 LPTEEEIIAKVGISPERYLEVMRAIKPVYSLH----SRHSTTSEEFINAITDVEGTGGDN 436
            P++EE+   VG+S E+  +++   +   S+     S   TT +E I   + +E      
Sbjct: 422 RPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQE-ITPDSGIETPTMSV 481

Query: 437 QRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVK 496
            +Q  L+R  + ++L+ L PKE  +I+ R+G+DG   R+L EI     +S+E VR+ E +
Sbjct: 482 GKQ--LMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESR 531

[Close]

BLAST of Cp4.1LG09g00430 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-20
Identity = 89/299 (29.77%), Postives = 142/299 (47.49%), Query Frame = 0


Query: 211 VLSSSEHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRA 270
           VLS  E  RL K ++    L   +  L+  LG EP++ +L  +  ++  +++  L     
Sbjct: 199 VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHL 258

Query: 271 ARNNLIKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYA 330
           AR  L   N+RLV+ +  +Y      G +  DL Q G+ GL+  I++F+  + FR+STY 
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDN---LGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYV 318

Query: 331 LFWIRHAIIRSMTLSSFT-RVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISP 390
            +WIR  + R++  +S T R+   L      I+ AKL L  E    P+ + I   + +S 
Sbjct: 319 YWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITPSIDRIAESLNMSQ 378

Query: 391 ERYLEVMRAIKPVY--------SLHSRHSTTSEEFINAITDVEGTGGDNQRQPALLRLAL 450
           ++      A+  V+        SL+     T   +I A T +E          AL     
Sbjct: 379 KKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYI-ADTRLENNPWHGYDDLALKEEVS 438

Query: 451 DDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPAR 501
             +  +L  +E  +IR  YGLD K   T  +I+  + +SRE VR+  + AL KLKH AR
Sbjct: 439 KLISATLGEREKEIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491

[Close]

BLAST of Cp4.1LG09g00430 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-16
Identity = 104/420 (24.76%), Postives = 181/420 (43.10%), Query Frame = 0


Query: 102 ENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPGDGIVRNHTRRIKRLDLDKRIALK 161
           E    L SV  + D+  + G+    +  +    +  G  I    +   + +D      + 
Sbjct: 160 ETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDTTELVDTTPNQQVF 219

Query: 162 SNKEDKATPSLRKQKDTVSEADETDDLVRNYPASTDMVSLDWKKMKIPPVLS------SS 221
            +   K     R+   T    D++   +      T   ++D  +++ PP         S 
Sbjct: 220 VSSRRKVKKKARRSSVTAENGDQSSLPI---GLRTTWNNIDVPRVRRPPKYRKKRERISR 279

Query: 222 EHTRLFKLVQPMKELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNL 281
             T +   V+ + ++ +++ +L++E G+  +      A  MN   + R L  G   R+ L
Sbjct: 280 NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDEL 339

Query: 282 IKHNLRLVLFVINKYFEDFATGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIR 341
           +K    LVLF+   Y      G   +DL QAG  G++   +RF+  R ++ STY  +WIR
Sbjct: 340 VKSTRSLVLFLARNY---RGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIR 399

Query: 342 HAIIRSMTLSSFTR-VSFGLDSVRV--DIQRAKLELSCEHH-RLPTEEEIIAKVGISPER 401
            ++  S  +S   R V      +R    IQ+A+  L   H  +   +EEI    G S ++
Sbjct: 400 KSM--STMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKK 459

Query: 402 YLEVMRAIKPVYSLHSRHS---TTSEEFINAITDVEGTGGDNQRQPALLRLALDDVLDSL 461
                + +K V S+  +     TT        T +E       RQ A  R  + D+L+ L
Sbjct: 460 IRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSA--RRDIHDLLEGL 519

Query: 462 KPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHL 509
           +P+E  V+  RYGL     ++L EI   L +S+E +RK E +A+ KL+     + LR +L
Sbjct: 520 EPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNX9	1.7e-165	61.32	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis tha...	[more]
P26683	6.1e-38	31.48	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	2.6e-33	29.53	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P74565	5.9e-33	28.68	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
P52322	2.2e-32	35.48	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]

BLAST of Cp4.1LG09g00430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543020.1	0.0	100.00	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita pe...	[more]
XP_022968276.1	0.0	98.23	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita ma...	[more]
KAG6574228.1	0.0	98.23	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial, partial [Cucurbit...	[more]
XP_022945188.1	0.0	98.04	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [Cucurbita mo...	[more]
XP_038903010.1	6.04e-315	89.39	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Benincasa hispida...	[more]

BLAST of Cp4.1LG09g00430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXK0	0.0	98.23	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1G085	0.0	98.04	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like OS=Cucurbita ...	[more]
A0A6J1E518	3.43e-314	89.59	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS...	[more]
A0A6J1E9R5	4.60e-314	89.59	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X1 OS...	[more]
A0A6J1J8N6	3.97e-313	89.39	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like isoform X2 OS...	[more]

BLAST of Cp4.1LG09g00430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24120.1	1.2e-166	61.32	sigma factor E	[more]
AT1G08540.1	9.6e-31	27.88	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	3.4e-28	27.87	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	2.6e-20	29.77	sigma factor A	[more]
AT3G53920.1	1.0e-16	24.76	RNApolymerase sigma-subunit C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 469..484 score: 38.47 coord: 302..315 score: 49.63 coord: 326..334 score: 63.94 coord: 484..495 score: 49.09 coord: 448..460 score: 38.21
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 359..424 e-value: 2.7E-10 score: 40.2 coord: 229..270 e-value: 4.0E-6 score: 26.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 348..400 e-value: 1.8E-7 score: 33.2 coord: 222..265 e-value: 1.5E-5 score: 27.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 431..509 e-value: 2.5E-20 score: 73.9
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 444..497 e-value: 1.8E-13 score: 49.8
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 271..497 e-value: 1.2E-23 score: 81.5
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 275..341 e-value: 1.2E-10 score: 41.0
None	No IPR available	GENE3D	1.10.1740.10		coord: 266..343 e-value: 4.2E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..147
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..508
None	No IPR available	PANTHER	PTHR30603:SF4	RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 2..508
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 434..506
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 357..413
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 194..342

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g00430.1	Cp4.1LG09g00430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity