Cp4.1LG08g13630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g13630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein s2
Location	Cp4.1LG08: 9779066 .. 9780769 (-)
RNA-Seq Expression	Cp4.1LG08g13630
Synteny	Cp4.1LG08g13630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTCTTCCCCTTCGGTAAATTCTTGTCCAACGCCTCATATTTTTTCCTCTACCGTTTCTTCCTCTTTACTCCGATTATGGCGGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTTAAAGAGGGAAAAATCCAGTCCTTGTACCAGATATACCACCACTCTCTCCCTATCAAGGAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAATGACGAGGCAATGAAGATCACGCCTGTCCAGAAGAAGACCCGTGCTGGGCAGAGAACCCGTTTCAAGGCGTTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGGTAACAAAGATTGGTAAGCCCCATACAGTGCCCTGTAAGGTTACTGGAAAGTGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCAGCAACTTTGTTAAGGTTTATCCTAAACTTGAATGGTTAATTTATTCTAGATTTTGGCTGTTTTCTACTAGCTTTTTGTTGATTTGAACTTTTGGGGTGCTTTATCATTATGGATACCACCACTTAGTTATTCAATTACTATATATTTTGTAGTCCATTCATTTGGAAAACTTCATCAGGATGGAATTCACTCTCAGGAAGTGTTGTTTTAAGTGTTCTTGATTTGTTTTCAGTGCAGATAATAACATTTAACCATATAATTTGTCCTCGAGTATTTTGCACTGCCTTCTATGTGTGCTAATTGGAGGAGTTGGCTAATTTCTACCTTAAAATTATGCAATATTTCTGTAATGTTTTTCTGGACTTGCATTGCATTGCGCTTTCTTAACTACATTTGTGCAACAACTCGCATTACTCTGTTCTACGTGAAGTTGAGCTTTTCTGCTACTGATGTCATCTTATATGTTTCATTTTTGTGGTGTCATGTCATGAGTCCATATGTTATCATCACTGATTTCAGAACTAATCATTTGATGAATGGATTTCATTTGGATGGGATGTTTAGTTTCCATTGCTCACTGATTCAAAACTTTTAAATAGCGTCTACTAAGGAGAGGTTTTCACACCCTTATAAGAAATGATTCGTTCTCCTCTCCAACCGACGTGAGATTCACATTTCTATACTGATTTTTTGTCTGCGGTTGCATAAACTAGTCGATAACTTCCCAATTTCCTGTTATAACCGGACGCTGTATCATTGTTGATTGTTCATAACAGTGAAATTGTAAACCAAATAAGAGACTGCTCTGGGGTTGTGTGTTCTAATTCAAATTGATTTGGATTTCTTTACTTGTGGGTGATGTTTTGATTTCATGTGGGGGTCTTATTTCAGGCAACCTTCGACTGCCTGCTGAAAACTTAGGGCTTCCTAACACCTGAGTTTTGGAGGGAGACACGGTTCACAAAATCCCCATTCAAAGAACACACAGATTTGTTGGCGAAACCCAGCGTGAAGGCATTGTTGTTAGAAGACCTCGAGAGGGCTGCTGCT

mRNA sequence

TTCCCTTCTTCCCCTTCGGTAAATTCTTGTCCAACGCCTCATATTTTTTCCTCTACCGTTTCTTCCTCTTTACTCCGATTATGGCGGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTTAAAGAGGGAAAAATCCAGTCCTTGTACCAGATATACCACCACTCTCTCCCTATCAAGGAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAATGACGAGGCAATGAAGATCACGCCTGTCCAGAAGAAGACCCGTGCTGGGCAGAGAACCCGTTTCAAGGCGTTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGATTGGTAAGCCCCATACAGTGCCCTGTAAGGTTACTGGAAAGTGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCAGCAACTTTGTTAAGGGCTTCCTAACACCTGAGTTTTGGAGGGAGACACGGTTCACAAAATCCCCATTCAAAGAACACACAGATTTGTTGGCGAAACCCAGCGTGAAGGCATTGTTGTTAGAAGACCTCGAGAGGGCTGCTGCT

Coding sequence (CDS)

TTCCCTTCTTCCCCTTCGGTAAATTCTTGTCCAACGCCTCATATTTTTTCCTCTACCGTTTCTTCCTCTTTACTCCGATTATGGCGGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTTAAAGAGGGAAAAATCCAGTCCTTGTACCAGATATACCACCACTCTCTCCCTATCAAGGAGCACCAGATCGTTGATACACTCATTGGCCCTAGCCTCAATGACGAGGCAATGAAGATCACGCCTGTCCAGAAGAAGACCCGTGCTGGGCAGAGAACCCGTTTCAAGGCGTTTGTCGTCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGATTGGTAAGCCCCATACAGTGCCCTGTAAGGTTACTGGAAAGTGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCAGCAACTTTGTTAAGGGCTTCCTAACACCTGAGTTTTGGAGGGAGACACGGTTCACAAAATCCCCATTCAAAGAACACACAGATTTGTTGGCGAAACCCAGCGTGAAGGCATTGTTGTTAGAAGACCTCGAGAGGGCTGCTGCT

Protein sequence

FPSSPSVNSCPTPHIFSSTVSSSLLRLWRSAVDLDEGSAAEEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEKRIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNFVKGFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA

Homology

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 7.5e-93
Identity = 175/224 (78.12%), Postives = 191/224 (85.27%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI  + QIY HSLP+KE+QI+D L+GPSL DE MKI PVQK+T
Sbjct: 42  EEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQT 101

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAF+VVGD NGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +IGK
Sbjct: 102 RAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGK 161

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL NF
Sbjct: 162 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTD-LLAKPSVK 249
           VK          GFLTPEFW+ETRF+KSP++EHTD LL  P VK
Sbjct: 222 VKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 2.4e-91
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.4e-91
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 2.4e-91
Identity = 170/225 (75.56%), Postives = 191/225 (84.89%), Query Frame = 0


Query: 38  SAAEEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQ 97
           ++ EEKWVPVTKLGRLV  G I+ + QIY HSLP+KE+QI+D LIGP+L DE MKI PVQ
Sbjct: 48  ASEEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQ 107

Query: 98  KKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----R 157
           K+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +
Sbjct: 108 KQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167

Query: 158 IGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL 217
           IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL
Sbjct: 168 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 227

Query: 218 SNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSV 248
            NFVK          GFLTPEFW+ETRF++SP++EHTD LA  ++
Sbjct: 228 GNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKAL 272

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy Swiss-Prot
Match: Q90YS3 (40S ribosomal protein S2 OS=Ictalurus punctatus OX=7998 GN=rps2 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.4e-76
Identity = 147/224 (65.62%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 37  GSAAEEK-WVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G  AE+K WVPVTKLGRLVK+ KI+SL +IY +SLPIKE +I+D  +G +L DE +KI P
Sbjct: 37  GRKAEDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMP 96

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFV +GD NGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 97  VQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWG 156

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGI+D +TS+RG T 
Sbjct: 157 NKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTA 216

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAK 245
           TL NF K           +LTP+ W+ET FTKSP++E TD LAK
Sbjct: 217 TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260

[Close]

BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: XP_004149390.2 (40S ribosomal protein S2-4 [Cucumis sativus] >KGN53852.1 hypothetical protein Csa_019128 [Cucumis sativus])

HSP 1 Score: 390 bits (1002), Expect = 1.65e-134
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERGAA 271

[Close]

BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: XP_008460763.1 (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo] >KAA0056140.1 40S ribosomal protein S2-4-like [Cucumis melo var. makuwa] >TYK14145.1 40S ribosomal protein S2-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 390 bits (1002), Expect = 1.65e-134
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]

BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: XP_011652156.1 (40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 387 bits (993), Expect = 3.60e-133
Identity = 201/235 (85.53%), Postives = 207/235 (88.09%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: XP_038906344.1 (40S ribosomal protein S2-4-like [Benincasa hispida])

HSP 1 Score: 387 bits (993), Expect = 3.60e-133
Identity = 201/235 (85.53%), Postives = 207/235 (88.09%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG08g13630 vs. NCBI nr
Match: XP_038882736.1 (40S ribosomal protein S2-4-like [Benincasa hispida])

HSP 1 Score: 386 bits (991), Expect = 7.79e-133
Identity = 200/232 (86.21%), Postives = 206/232 (88.79%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTL+GPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLER 257
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPER 268

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy TrEMBL
Match: A0A5A7ULX0 (40S ribosomal protein S2-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00150 PE=3 SV=1)

HSP 1 Score: 390 bits (1002), Expect = 7.98e-135
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy TrEMBL
Match: A0A0A0KZQ4 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G166960 PE=3 SV=1)

HSP 1 Score: 390 bits (1002), Expect = 7.98e-135
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERGAA 271

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy TrEMBL
Match: A0A1S3CCQ1 (40S ribosomal protein S2-4-like OS=Cucumis melo OX=3656 GN=LOC103499519 PE=3 SV=1)

HSP 1 Score: 390 bits (1002), Expect = 7.98e-135
Identity = 203/235 (86.38%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 37  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 96

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 97  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 156

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 157 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 216

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED ER AA
Sbjct: 217 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy TrEMBL
Match: A0A0A0LFC7 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 387 bits (993), Expect = 1.74e-133
Identity = 201/235 (85.53%), Postives = 207/235 (88.09%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKIQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG08g13630 vs. ExPASy TrEMBL
Match: A0A5D3DPL0 (40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006280 PE=3 SV=1)

HSP 1 Score: 385 bits (990), Expect = 4.99e-133
Identity = 200/235 (85.11%), Postives = 207/235 (88.09%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEG+IQSL QIY HSLPIKEHQIVDTLIGPSL DE MKI PVQK+T
Sbjct: 35  EEKWVPVTKLGRLVKEGRIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQT 94

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLS  P  +     +IGK
Sbjct: 95  RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGK 154

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTL NF
Sbjct: 155 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 214

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKALLLEDLERAAA 260
           VK          GFLTPEFWRETRFTKSPF+EHTDLLAKP+VKALLLED +R  A
Sbjct: 215 VKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG08g13630 vs. TAIR 10
Match: AT3G57490.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 341.7 bits (875), Expect = 5.3e-94
Identity = 175/224 (78.12%), Postives = 191/224 (85.27%), Query Frame = 0


Query: 41  EEKWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITPVQKKT 100
           EEKWVPVTKLGRLVKEGKI  + QIY HSLP+KE+QI+D L+GPSL DE MKI PVQK+T
Sbjct: 42  EEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQT 101

Query: 101 RAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK-----RIGK 160
           RAGQRTRFKAF+VVGD NGHVGLGVKCSKEVATAIRG+IILAKLS  P  +     +IGK
Sbjct: 102 RAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGK 161

Query: 161 PHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLSNF 220
           PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTKTL NF
Sbjct: 162 PHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221

Query: 221 VK----------GFLTPEFWRETRFTKSPFKEHTD-LLAKPSVK 249
           VK          GFLTPEFW+ETRF+KSP++EHTD LL  P VK
Sbjct: 222 VKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Cp4.1LG08g13630 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG08g13630 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG08g13630 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG08g13630 vs. TAIR 10
Match: AT1G58684.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-92
Identity = 173/229 (75.55%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 37  GSAAEE-KWVPVTKLGRLVKEGKIQSLYQIYHHSLPIKEHQIVDTLIGPSLNDEAMKITP 96
           G A+EE KWVPVTKLGRLV + KI  L QIY HSLP+KE+QI+D L+GP+L DE MKI P
Sbjct: 45  GRASEETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104

Query: 97  VQKKTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSFDPCEK---- 156
           VQK+TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLS  P  +    
Sbjct: 105 VQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

Query: 157 -RIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTK 216
            +IGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSSRGSTK
Sbjct: 165 NKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTK 224

Query: 217 TLSNFVK----------GFLTPEFWRETRFTKSPFKEHTDLLAKPSVKA 250
           TL NFVK          GFLTPEFW+ETRF++SP++EHTD L+  +V A
Sbjct: 225 TLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCM3	7.5e-93	78.13	40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1	[more]
Q8L8Y0	2.4e-91	75.55	40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2	[more]
Q93VB8	2.4e-91	75.55	40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1	[more]
P49688	2.4e-91	75.56	40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2	[more]
Q90YS3	6.4e-76	65.63	40S ribosomal protein S2 OS=Ictalurus punctatus OX=7998 GN=rps2 PE=2 SV=1	[more]

BLAST of Cp4.1LG08g13630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149390.2	1.65e-134	86.38	40S ribosomal protein S2-4 [Cucumis sativus] >KGN53852.1 hypothetical protein Cs...	[more]
XP_008460763.1	1.65e-134	86.38	PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo] >KAA0056140.1 40S ribo...	[more]
XP_011652156.1	3.60e-133	85.53	40S ribosomal protein S2-4 [Cucumis sativus]	[more]
XP_038906344.1	3.60e-133	85.53	40S ribosomal protein S2-4-like [Benincasa hispida]	[more]
XP_038882736.1	7.79e-133	86.21	40S ribosomal protein S2-4-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG08g13630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULX0	7.98e-135	86.38	40S ribosomal protein S2-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KZQ4	7.98e-135	86.38	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G166960 PE=...	[more]
A0A1S3CCQ1	7.98e-135	86.38	40S ribosomal protein S2-4-like OS=Cucumis melo OX=3656 GN=LOC103499519 PE=3 SV=...	[more]
A0A0A0LFC7	1.74e-133	85.53	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=...	[more]
A0A5D3DPL0	4.99e-133	85.11	40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Cp4.1LG08g13630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57490.1	5.3e-94	78.13	Ribosomal protein S5 family protein	[more]
AT1G58983.1	1.7e-92	75.55	Ribosomal protein S5 family protein	[more]
AT1G59359.1	1.7e-92	75.55	Ribosomal protein S5 family protein	[more]
AT1G58380.1	1.7e-92	75.55	Ribosomal protein S5 family protein	[more]
AT1G58684.1	1.7e-92	75.55	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.20		coord: 43..147 e-value: 2.0E-50 score: 171.4
None	No IPR available	PANTHER	PTHR13718:SF101	40S RIBOSOMAL PROTEIN S2-1-RELATED	coord: 40..257
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 82..147
IPR005711	Ribosomal protein S5, eukaryotic/archaeal	TIGRFAM	TIGR01020	TIGR01020	coord: 40..218 e-value: 1.0E-75 score: 251.8
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 86..146 e-value: 1.7E-25 score: 88.8
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 86..149 score: 20.319815
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 164..220 e-value: 1.6E-18 score: 65.9
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 148..227 e-value: 4.5E-34 score: 118.5
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 40..257
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 103..135
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 157..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g13630.1	Cp4.1LG08g13630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding