Cp4.1LG08g13130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g13130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type domain-containing protein
Location	Cp4.1LG08: 9514611 .. 9515330 (-)
RNA-Seq Expression	Cp4.1LG08g13130
Synteny	Cp4.1LG08g13130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATCCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAATAGATTTGATTTCAATCGTGATCTAGACCAACCGCCGGAGCCAGACGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGTGTCTGGCACCGAGGCAGGGGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTGACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTATACCGATCCGCTCGTTCCTAGACACCAGGAGCAGCCTCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTGTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGAAGAAGATTGGCATGA

mRNA sequence

ATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATCCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAATAGATTTGATTTCAATCGTGATCTAGACCAACCGCCGGAGCCAGACGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGTGTCTGGCACCGAGGCAGGGGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTGACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTATACCGATCCGCTCGTTCCTAGACACCAGGAGCAGCCTCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTGTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGAAGAAGATTGGCATGA

Coding sequence (CDS)

ATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATCCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAATAGATTTGATTTCAATCGTGATCTAGACCAACCGCCGGAGCCAGACGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGTGTCTGGCACCGAGGCAGGGGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTGACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTATACCGATCCGCTCGTTCCTAGACACCAGGAGCAGCCTCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATAAATTCAGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTGTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGAAGAAGATTGGCATGA

Protein sequence

MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRFDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGTEAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA

Homology

[Close]

BLAST of Cp4.1LG08g13130 vs. NCBI nr
Match: XP_022971400.1 (uncharacterized protein LOC111470133 isoform X3 [Cucurbita maxima])

HSP 1 Score: 465 bits (1197), Expect = 2.25e-163
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 110 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 169

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPH SGT
Sbjct: 170 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGT 229

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 230 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 289

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 290 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 348

[Close]

BLAST of Cp4.1LG08g13130 vs. NCBI nr
Match: XP_023540991.1 (uncharacterized protein LOC111801204 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 467 bits (1201), Expect = 8.55e-163
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 188 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 247

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT
Sbjct: 248 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 307

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 308 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 367

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 368 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 426

[Close]

BLAST of Cp4.1LG08g13130 vs. NCBI nr
Match: XP_022971399.1 (uncharacterized protein LOC111470133 isoform X2 [Cucurbita maxima])

HSP 1 Score: 465 bits (1197), Expect = 2.45e-162
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 178 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 237

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPH SGT
Sbjct: 238 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGT 297

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 298 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 357

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 358 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 416

[Close]

BLAST of Cp4.1LG08g13130 vs. NCBI nr
Match: XP_022971398.1 (uncharacterized protein LOC111470133 isoform X1 [Cucurbita maxima])

HSP 1 Score: 465 bits (1197), Expect = 3.24e-162
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 186 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 245

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPH SGT
Sbjct: 246 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGT 305

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 306 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 365

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 366 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 424

[Close]

BLAST of Cp4.1LG08g13130 vs. NCBI nr
Match: KAG6596242.1 (E3 ubiquitin-protein ligase RNF5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 464 bits (1193), Expect = 1.31e-161
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 186 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 245

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQP EPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT
Sbjct: 246 FDFNRDLDQPSEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 305

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 306 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 365

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 366 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 424

[Close]

BLAST of Cp4.1LG08g13130 vs. ExPASy TrEMBL
Match: A0A6J1I5M4 (uncharacterized protein LOC111470133 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470133 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 1.09e-163
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 110 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 169

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPH SGT
Sbjct: 170 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGT 229

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 230 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 289

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 290 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 348

[Close]

BLAST of Cp4.1LG08g13130 vs. ExPASy TrEMBL
Match: A0A6J1I8F6 (uncharacterized protein LOC111470133 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470133 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 1.19e-162
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 178 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 237

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPH SGT
Sbjct: 238 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGT 297

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 298 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 357

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 358 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 416

[Close]

BLAST of Cp4.1LG08g13130 vs. ExPASy TrEMBL
Match: A0A6J1I6R0 (uncharacterized protein LOC111470133 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470133 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 1.57e-162
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 186 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 245

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPH SGT
Sbjct: 246 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHASGT 305

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR
Sbjct: 306 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 365

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 366 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 424

[Close]

BLAST of Cp4.1LG08g13130 vs. ExPASy TrEMBL
Match: A0A6J1ET17 (uncharacterized protein LOC111436088 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111436088 PE=4 SV=1)

HSP 1 Score: 460 bits (1183), Expect = 1.42e-161
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 110 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 169

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT
Sbjct: 170 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 229

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPP VEDR
Sbjct: 230 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPP-VEDR 289

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 290 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 347

[Close]

BLAST of Cp4.1LG08g13130 vs. ExPASy TrEMBL
Match: A0A6J1ENR1 (uncharacterized protein LOC111436088 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436088 PE=4 SV=1)

HSP 1 Score: 460 bits (1183), Expect = 1.55e-160
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR
Sbjct: 178 MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 237

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 120
           FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT
Sbjct: 238 FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGT 297

Query: 121 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPPVEDR 180
           EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPP VEDR
Sbjct: 298 EAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPP-VEDR 357

Query: 181 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 239
           DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA
Sbjct: 358 DSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 415

[Close]

BLAST of Cp4.1LG08g13130 vs. TAIR 10
Match: AT3G58030.1 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50
Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 2   KTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRF 61
           KTVTPIYGRG++    EE    K+P+RPHAR++ESLR TIQR+    PM+EMIRR+ NRF
Sbjct: 185 KTVTPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRF 244

Query: 62  DFNRDLDQPPEPD-----GSHETFGRSPTLLNRILTSRGIRREQ----------ISLHPH 121
               D D  P PD      S     R+ ++LNR++TSRG+R EQ          ++    
Sbjct: 245 ----DRDSTPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASED 304

Query: 122 DDVGVLELPHVSGTEAGDTRLQSLPVLRSL-LHR-TRVSSLTSAFNTADRLPEGFLYTDP 181
            D+     P + G    +TR   L + R L  HR  R+S+ TSA ++A+RL + +  T P
Sbjct: 305 IDLNPNIAPDLEG--ESNTRFHPLLIRRQLQSHRVARISTFTSALSSAERLVDAYFRTHP 364

Query: 182 LVPRHQEQ---PPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDS-L 238
           L   HQEQ    P  V+DRDSFSSIAAVINSESQ+DTAVEIDSM + STSSSRRRN++  
Sbjct: 365 LGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSM-ALSTSSSRRRNENGS 424

[Close]

BLAST of Cp4.1LG08g13130 vs. TAIR 10
Match: AT3G58030.2 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50
Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 2   KTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRF 61
           KTVTPIYGRG++    EE    K+P+RPHAR++ESLR TIQR+    PM+EMIRR+ NRF
Sbjct: 185 KTVTPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRF 244

Query: 62  DFNRDLDQPPEPD-----GSHETFGRSPTLLNRILTSRGIRREQ----------ISLHPH 121
               D D  P PD      S     R+ ++LNR++TSRG+R EQ          ++    
Sbjct: 245 ----DRDSTPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASED 304

Query: 122 DDVGVLELPHVSGTEAGDTRLQSLPVLRSL-LHR-TRVSSLTSAFNTADRLPEGFLYTDP 181
            D+     P + G    +TR   L + R L  HR  R+S+ TSA ++A+RL + +  T P
Sbjct: 305 IDLNPNIAPDLEG--ESNTRFHPLLIRRQLQSHRVARISTFTSALSSAERLVDAYFRTHP 364

Query: 182 LVPRHQEQ---PPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDS-L 238
           L   HQEQ    P  V+DRDSFSSIAAVINSESQ+DTAVEIDSM + STSSSRRRN++  
Sbjct: 365 LGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSM-ALSTSSSRRRNENGS 424

[Close]

BLAST of Cp4.1LG08g13130 vs. TAIR 10
Match: AT3G58030.3 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50
Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 2   KTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRF 61
           KTVTPIYGRG++    EE    K+P+RPHAR++ESLR TIQR+    PM+EMIRR+ NRF
Sbjct: 185 KTVTPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRF 244

Query: 62  DFNRDLDQPPEPD-----GSHETFGRSPTLLNRILTSRGIRREQ----------ISLHPH 121
               D D  P PD      S     R+ ++LNR++TSRG+R EQ          ++    
Sbjct: 245 ----DRDSTPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASED 304

Query: 122 DDVGVLELPHVSGTEAGDTRLQSLPVLRSL-LHR-TRVSSLTSAFNTADRLPEGFLYTDP 181
            D+     P + G    +TR   L + R L  HR  R+S+ TSA ++A+RL + +  T P
Sbjct: 305 IDLNPNIAPDLEG--ESNTRFHPLLIRRQLQSHRVARISTFTSALSSAERLVDAYFRTHP 364

Query: 182 LVPRHQEQ---PPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDS-L 238
           L   HQEQ    P  V+DRDSFSSIAAVINSESQ+DTAVEIDSM + STSSSRRRN++  
Sbjct: 365 LGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSM-ALSTSSSRRRNENGS 424

[Close]

BLAST of Cp4.1LG08g13130 vs. TAIR 10
Match: AT3G58030.4 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 5.7e-50
Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 2   KTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRF 61
           KTVTPIYGRG++    EE    K+P+RPHAR++ESLR TIQR+    PM+EMIRR+ NRF
Sbjct: 185 KTVTPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRF 244

Query: 62  DFNRDLDQPPEPD-----GSHETFGRSPTLLNRILTSRGIRREQ----------ISLHPH 121
               D D  P PD      S     R+ ++LNR++TSRG+R EQ          ++    
Sbjct: 245 ----DRDSTPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASED 304

Query: 122 DDVGVLELPHVSGTEAGDTRLQSLPVLRSL-LHR-TRVSSLTSAFNTADRLPEGFLYTDP 181
            D+     P + G    +TR   L + R L  HR  R+S+ TSA ++A+RL + +  T P
Sbjct: 305 IDLNPNIAPDLEG--ESNTRFHPLLIRRQLQSHRVARISTFTSALSSAERLVDAYFRTHP 364

Query: 182 LVPRHQEQ---PPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDS-L 238
           L   HQEQ    P  V+DRDSFSSIAAVINSESQ+DTAVEIDSM + STSSSRRRN++  
Sbjct: 365 LGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSM-ALSTSSSRRRNENGS 424

[Close]

BLAST of Cp4.1LG08g13130 vs. TAIR 10
Match: AT2G42030.1 (RING/U-box superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 6.5e-30
Identity = 105/254 (41.34%), Postives = 146/254 (57.48%), Query Frame = 0


Query: 1   MKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNR 60
           +KTVTPIYGRG     +EE +  KIP RP AR+ ESLR T+ R+  + P  E+ R L +R
Sbjct: 186 VKTVTPIYGRGIQKRESEEVSNTKIPSRPQARRTESLRTTLNRSG-HIP-TEIFRHLQDR 245

Query: 61  FDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQ------ISLHPHDDVGVLEL 120
            +      +            R+   LNR +TSRG+R E+      +     D++  ++L
Sbjct: 246 LERESSTGE-----------RRARPSLNRFMTSRGVRAEENQSSEALVEPSSDEINDIDL 305

Query: 121 PHVSGTEAGDTRLQSLPVLRSLLHRT-------RVSSLTSAFNTADRLPEGFLYTDPLVP 180
             ++     +   ++L   R+L  +        RVSS T   ++A+RL + +L T  L  
Sbjct: 306 -ILNNAPENEEENENLSSSRALATQRRWAQMYGRVSSFT--LSSAERLADTYLITHAL-G 365

Query: 181 RHQEQ---PPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSS-RRRNDSLQVS 238
           R+QEQ   PP  VEDRDSFSSI  VINSESQ++TA EI+SM++ STSSS RR  +S +VS
Sbjct: 366 RNQEQNSSPPVGVEDRDSFSSIVGVINSESQVETAAEINSMLTVSTSSSVRRHENSSRVS 422

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13130 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g13130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971400.1	2.25e-163	99.58	uncharacterized protein LOC111470133 isoform X3 [Cucurbita maxima]	[more]
XP_023540991.1	8.55e-163	100.00	uncharacterized protein LOC111801204 [Cucurbita pepo subsp. pepo]	[more]
XP_022971399.1	2.45e-162	99.58	uncharacterized protein LOC111470133 isoform X2 [Cucurbita maxima]	[more]
XP_022971398.1	3.24e-162	99.58	uncharacterized protein LOC111470133 isoform X1 [Cucurbita maxima]	[more]
KAG6596242.1	1.31e-161	99.58	E3 ubiquitin-protein ligase RNF5, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Cp4.1LG08g13130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5M4	1.09e-163	99.58	uncharacterized protein LOC111470133 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I8F6	1.19e-162	99.58	uncharacterized protein LOC111470133 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I6R0	1.57e-162	99.58	uncharacterized protein LOC111470133 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ET17	1.42e-161	99.58	uncharacterized protein LOC111436088 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ENR1	1.55e-160	99.58	uncharacterized protein LOC111436088 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cp4.1LG08g13130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58030.1	5.7e-50	50.19	RING/U-box superfamily protein	[more]
AT3G58030.2	5.7e-50	50.19	RING/U-box superfamily protein	[more]
AT3G58030.3	5.7e-50	50.19	RING/U-box superfamily protein	[more]
AT3G58030.4	5.7e-50	50.19	RING/U-box superfamily protein	[more]
AT2G42030.1	6.5e-30	41.34	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..239
None	No IPR available	PANTHER	PTHR12313:SF54	BNAC04G52420D PROTEIN	coord: 2..238
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g13130.1	Cp4.1LG08g13130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity