Cp4.1LG08g13070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g13070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-directed RNA polymerase subunit
Location	Cp4.1LG08: 9384242 .. 9393630 (-)
RNA-Seq Expression	Cp4.1LG08g13070
Synteny	Cp4.1LG08g13070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGTCCGGAACTTCGTTTTCAATCTCTTCTTCTTGCTCTAGGGCTTTGTTTTTGCACTTCGATCGCTCGCCATGGATTTGCGGTTCCCTTACTCCCCGGCTGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATACTTAGCCCAGATGAGATTGTAATTCTCTATCCATCCACGACTTCAATTTCGATTACAATGTATTTCGTTTAGTTTGATTCTGTCTCTATGTTGAGAGGTCGTTCGGGGATGAGGAATGCTTTACGTTTGTATGAATTAGGTTGCTTTATTGATGTGCAANGGGATGAGGAATGCTTTACGTTTGTATGAATTAGGTTGCTTTAGGAAGTGGCTCAGCTGGGTTTTTGCTGCCTGTTGGTTTATTGATGTGCAAGTTCTGCTTGTTTTTTTGGTTATAGAGTTGGAGTACTGGATGAACTTCCGGGGTTTTGTATTTTATTAGTTAGGGACCAGGGCCGTGTTCTTTCTTCTTGTTCCTTGTATTTTATTCACTGATGGGTAATGGTTTCTTATTCCTTGAAATGCATAGCTTTTAGTGGACATTTTTGGGTTCTTCTTCTCTCACATTTTAAATTGAAAGTTGGTCTTGAGCTAGAAAGAAACTTATATTATTTTTTTAATAAAATTTAAATTATTACGTTTTATTCCAAATGATGTGTTGTTTTTGTTTTTGAATAATTTGAAATAGGAAATAGGAAATAAGAAACCAGATTGTTTTCGTATGCCAATGTTTCTTTAAATTGAGAAATGGATAATATAATCTGTTACAAAATCCATATGTTGGAAGTGAGAATTTTTTTTTACTACACACCTTGGTGTCTAAACCATATTCTTTGGACTTCAGAGGCAAATGTCCGTGGTGCAAATTGAGCATGGTGAAACTACAGAGAGGGGTAAGCCAAAAGTAGGTGGTTTGAGTGACCCGCGGCTTGGTACAATTGACAGAAAAATGAAGTGTGAAACTTGCACTGCGAACATGGCTGAGTGCCCTGGGCACTTTGGGCACCTCGAGCTTGCCAAGCCAATGTTTCATATTGGATTTATGAAGACTGTGCTCACTATCATGCGTTCTGTTTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGTACCGTTCTTTCTTGATATTATATTTTGATGTTTACTGGATTGGTTTCCTTTTTTGTCCTTCAGTTAAGTAGGATTTCACGCTGTACATGTTTTTTTCTTTCTTTTTCTGCTTCCTTGTTGCTATGATTCGTTATGAATGATTCCAGAAGACTGCATAGGATTACCTTGGCTAGGACTTTTATGGTTTTAGACCATGTAATATGTTCGTTATGGTTCTTCTAAGAGCGAAGTGGAAAAGATAACTGGAATGCATCTCTTTAAGATGTTGGGATAATGGGAATTTGGGTCTAAGTTATCATTATCTCATTGATTGATTCTAGCTATTGTATGGAAATAGTCAATTACCTTGAGCAATCCGTTTATCATTTTTCAGGAGGACCCAAAATTTAAACAAGCGATGCGGATAAAGAATCCCAAGAACAGGCTTAAAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAAGGTGGAGATGAAATTGACGTTCAAGGCCAAGATTCAGATCAACCGGTGAAAAGGGGTCGGGGTGGCTGTGGTGCTCAGCAGCCTAAGATCTCAATTGATGGTATGAAAATGGTTGCGGAGTACAAGGCTCAGAGGAAGAAAAATGATGACCAGGAGCAGCTGCCTGAACCTGTGGAAAGAAAACAGACACTTAGTGCCGAAAGGGTGACCAATTTCAATCCTGATTAGCATTATCCTTCGTAATTATTTTGCGTGTACCTCTTTCATGAGGTCAAATGTTGGATGGATTCTTGTAGGTTCTTGGTGTTCTGAAAAGAATAAGCGACGAAGATTGCAAACTCTTGGGCCTAAATCCAAAGTATGCTCGACCTGACTCGATGATTCTGCAAGTCCTTCCAATTCCTCCACCTCCTGTGAGACCATCGGTTATGATGGACACCTCATCTAGAAGTGAGGTATGCCTGTTCTGCTTTTGTTTTATGATGTCTAATTGTTTCTTGTTTTGTTTACTGCTTCCAATAAAATTCATTTTATTTTCTAGTTAGTTTCTGGGATAGTGTTACGATGCTTTTGACAAAATTGGATCAATTTTAACGTGACATCTCTCAATGCAGGACGATCTAACTCATCAGTTGGCTATGATTATAAGGCACAACGAAAACCTCAGGAGGCAAGAAAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACGTATTTTGATAATGAATTACCTGGACTACCCAGGGTATTAAGTCTTTTTTTTTTTCTGAATCTATATGATTTTCTTTTTCCAACCATTTTTCTTCTTACTTTCATATGTTGCTTTAATCAAGGCCACACAACGATCTGGGAGGCCCATTAAATCTATTTGTAGTAGGCTCAAGGCAAAGGAAGGCCGGATTAGGGGTAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGTACAGTTATAACACCTGATCCAACAATTAATATTGATGAACTGGGAGTGCCATGGAGCATTGCTTTGAACCTTACATATCCGGAGACTGTGACACCATATAATATAGAGAGGTCCGTGTTTTAAAATCATTTCTAGCTTCTTGATTCTTTCCCTTTCACTGTATTTATTGTTAGCTGATGGTCTCTTCTTTTGAAAATCAGATTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATTATACGAGATGACGGGCAGAGGCTTGATCTTCGATATCTTAAGAAAAGTAGTGATCATCATTTGGAGCTTGGGTACAAGGCAAGATTTTCTGATCATGCATGCAATCTAATATTTTTGGGTGTTTTATAATTCCTAAAATCCTCATTCTTTTGCTGCTGTGATCATAGGTGGAGCGTCATTTGAACGATGGTGACTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATCATGGGACACAGAATCAAGATTATGCCCTACTCAACTTTCCGCCTAAATTTATCTGTCACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTCATTTGAGACAAGGGCTGAAGTACTGGAGCTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCTGTCATGGGTATAGTGCAAGATACTCTGTTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACAAAGGTCACAGTAACATGATTGTTATCTCTTGTCCTTTTACTGCACAAACATTTTTGTTTGTTGTAAGTTGGGATCTGAAATTGCATCGATAAATTTGTGCAGGATGTTTTCATGAATATCTTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACTGGAAAACAAGTTTTTAATCTTATCATACCAAAGCAGATTAATCTCTCGAGAACTTCTGCTTGGCATTCTGAGTCTGAATCTGGATTCATTACTCCGGGAGATACTTTTGTTAGGATTGAGAAGGGGGAACTGCTTTCTGGAACTCTTTGCAAGAAGACTCTCGGAACTTCAACTGGAAGTCTTATACATGTTATTTGGTATGCTGCATTAGCTATAGTACTCGTGCACTTCTTTTCAAAGGGACGTGGTCTGTAATCATCATCATCATCATCTCTTAAAAAAGTAGTTGCACNGCATTAGCTATAGTACTCGTGCACTTCTTTTCAAAGGGACGTGATCTGTAATCATCATCATCATCATCTCTTAAAAAAGTAGTTGCACTTTTTTTTTTTGAACTAATACTAATCGCCATGTTCATAATGCAGTTTGAAAAGAACTGTTCCGACTCTTTGTTTGACTAATTGGTGATGTCTTTATCACATTAAAGATGGCGGTTGGTGTTTCAAATGTCACGTTCGTTCATTTGAGTTGCCTAGATTAAGGAGTTAACAGTCTCATAAATTTTTTTTTTGACACATGCTTTTCATTATCCTTTTTCTGAAATTGAAGCTCAATCGTGTAAATCATTTTCAGGGAGGAGGTTGGTCCTGATGCAGCTAGAAAATTTCTTGGTCATACACAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATTTCTGCAGCTAAAAATGAAGTGAAAAATCTCATTAAGAAAGCCCAGGAGCGTAGTTTAGAGCCTGAACCTGGACGGACGATGATGGATTCATTTGAAAACAAAGTGAACCAGGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGTGCGCAAAAAAGTTTGTCAGAGAGTAACAATCTGAAAGCTATGGTTACTGCAGGATCCAAGGGAAGTTTTATCAATATCTCCCAGATGACTGCTTGTGTGGGGCAGCAAAATGTTGAAGGGAAGCGAATACCATTTGGTTTTATTGATCGAACTTTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAAAACTCATATCTTCGAGGATTGACCCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGATACATTCAGAGGAGGCTGGTGAAAGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCACTGGGTGATGTAATTCAGTTTCTTTATGGTGAAGATGGCATGGATTCTGTTTGGATAGAATCTCAGAAACTAGATTCTTTGAAGATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAGAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTTGAAGATTTAAAAACTATCCGTGAATTCCGCAACGTATTTGAGGCTGAAGTCCAAAAGCTTGAAGCAGACAGGTATCAATTGGGAACAGAAATTGCAACCACAGGTGAAAACTCGTGGCCAATGCCAGTTAACCTCAAAAGGCTTATTCAGAATGCACAAAAGACTTTCAAAATCGACTTTCGAAGGGCCTCTGATATGCATCCTATGGAAATTGTTGAAGCTATCGACAAACTTCAAGAAAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTTAGTGTGGAGGCTCAAAAGAACGCCACCCTTTTCTTCAATATATTGCTGCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACACGCGAAGCGTTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTTGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAATCCATTGGAGAGCCAGCGACTCAGATGACGCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAACGTCACCCTTGGTGTTCCCAGGTTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCATCTCTTTCAGTCTATCTAAAACCCGAAGCTAATAAAACTAAGGAGAGAGCCAAGACTGTTCAATGTGCTTTGGAATATACTACTCTTAGGAGTGTCACACAAGCTACGGAAGTATGGTATGATCCTGACCCAATGAGCACGATTATTGAAGAGGATATGGATTTTGTGAAATCCTACTATGAGATGCCAGATGAAGAAATTGCGCCCGAGAAAATCTCCCCATGGTTGCTCCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTTAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTTATACTTCGTATCCGTATCATGAACGATGAAGCCCCAAAGGGTGAGTTGAATGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGCAACATGCTAACTGAAATGGCTCTTCGAGGAATACCAGATATCAACAAGGTTTTCATTAAGTGTGGTAAAGTGAACAAGTTTGATGAGAATGAAGGGTTTAAGCCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCAGTTATTTGTCATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGGATTGAAGCAGTTCGACGTTCCCTCCTAGATGAATTGCGTGTTGTTATCTCCTTTGATGGATCTTACGTTAATTACCGGCATCTTGCCATCCTTTGTGACACCATGACTTATCGTGGCCACCTGATGGCTATTACCCGTCATGGTATCAACCGAAATGATACTGGACCGATGATGAGATGCTCATTTGAAGAAACTGTGGATATTTTACTTGATGCTGCAGTATATGCTGAAACTGATCACTTGAGGGGTGTTACTGAAAATATAATGTTGGGTCAACTGGCACCCATAGGAACAGGGGGTTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGATGGTCTGGAGTTTGGCATGACACCTTCCCGTTCCCCGATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAGTTATTTGTTGAGCCCGAATCTCCGACTCTCACCTATTAGTGATGCTCAATTTTCACCCTATGTTGGAGGAATGGCTTTCTCGCCTACTTCGTCTCCGGGATATAGCCCATCATCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCTACCTCCCCTGGTTATAGCCCCACTTCCCCGGGATATAGCCCTACCTCTCCTGGCTACAGTCCAACATCTCCAACCTACAGTCCTAGTTCGCCTGGTTACAGCCCGACTAGTCCTGCGTATTCTCCTACGAGTCCGNCCTACAGTCCTAGTTCGCCTGGTTACAGCCCGACTAGTCCTGCATATTCTCCTACGAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACATCTCCTAGTTACAGCCCAACATCTCCAAGTTACAGCCCCACTTCGCCGGCTTACAGTCCCACTTCTCCCGCTTATAGTCCCACTTCACCTGCATATAGCCCGACTTCACCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCTTCCTATAGCCCCACATCACCCTCCTACAGCCCAACATCCCCGTCCTACAGCCCTACATCACCTTCCTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGCCCCACATCACCGAGCTACAGTCCCACTTCGCCGAGCTATAGTCCGACATCACCAAGTTATAATCCTCAATCAGCTAAATACAGCCCATCACAGGCCTACTCACCCAGTAGTCCACGGTTGTCCCCATCAAGTCCCTATAGCCCAACCTCTCCGAACTACAGGTAGTGGGTTGTTAAAGTATTTTTGGGTTTAAATGTCTTTAGTAGTACGTTCTGGCGTTTGAATATGAACTCTGTTGCATATATGCTTGTTTTCCCGGTTTGTTTCTGTATANGTAGTGGGTTGTTAAAGTATTTTTGGGTTTAAATGTCTTTAGTAGTACGTTCAGGCGTTTGAATATGAACTCTGTTGCATATATGCTTGTTTTCCCGGTTTGTTTCTGTATGCCTTGAATCTAATAAGTTCGAACTTCTTGTCTTACCTTGCAGTCCAACATCACCATCATATTCACCTACGTCTCCGGCATATTCTCCGTCAAGCCCAACCTACAGTCCTAGCAGGTGAGCTTTTACTGCCTCCTTTCTCGAGGGCTCACTTTAACATCTATAATGATCATGATTACTTCGCAATTTCCTTAACCCATTATTTGCCTTTTCTCTCTTCAGTCCATATAACACAGGAGCCAGCCCAGACTACAGCCCCAGTTCTCCACAATATAGGTTAGCCGAGATAAACTTTTCTAGTCAAAACATTTACATCTTTTTTTTTCAGTCAGCATCTAATCATTTATATTACTTGCAGTCCAAGTGCAGGATACTCACCTACTGCTCCTGGATATTCTCCGTCATCTACTAGTCAGTACACCTCACAAACAACTGACAAGGATGATAGGAGTAGAAAGGACGATAGGAGCAATCGATGAGGGTTGATATCAAATATCTTGGTTGAAGGAAGAGGTAAAATTCTTGAAGCCCTTATCTCTTGACGATTAACAAGGCTAACTGGTTCGTTTTGTAATAATTGATCTTCAGGGTGTTTTATATGTGGATTTCTCTTCTGTGTTGCTTGCCATCATTCTGGATCTCGGCTTGGAGAAGGGGCATTGTATCTTTGTAGCCGGATTCAGTATTTCGTTAAAAAGATTGGGTGGGTACATATTCTGTTAATAGGGTTGATTATTCCTCTAGGAAGCCTCTTAACTGAGGACAAGAGTGCTAACATTCGAGGTAGCTTCATATAGTCAGAAAGAATTAGAAGGAAGAACAATAGAGTTGACAAAATCAGAGAAGACTGATTTTGGTGTGCAGGTGTTCTAGATATAATTGATGACTGAACGACATAGCTCACGGTAATATAGTTATTTTTGTTTGTGTTGTTTTGACTCTCAAAACTTGCCTTTGTGACGTTCGAACGTTCAAAAAAGTTTCGAAACACGAACCACATTAACCTTTTGCAAGTGATTTCTTAGAACATGTTGTAGTTAATCCTTCATTGTATAATTGTACTGATTGTGCAGGTAATTTGTAAATGTCAGGCCCTCGAAAACCGAGAACGAGCAGAGGCAAAGAAACGACCCAACTCATCAAGGCATGCTGCTTGGAATGAGAATACATTATTTGATTTAGATTTGGCAGAGAACAGAACTTGTCTGAAGCTTTGTTTATTTTGCTATGAAGAATCTGTGAACACATTACAAGCAAAAACTGATTATCTTACAATTAGCCCGTCCGTTCCCCTGTATCTTTGTACCTTACCAAATAGCAAATGATTATGTAAAGAAAACTGTAATTTGTTTGACTCAGAAACTCTACTAAGAAATAGGCTTCTCAACTATGTATTAGTTTTTATTTGTAAATTGTACTGGTATCAAATGAACTTTCAGTATCAGTCTTAAAATTGTTAGGTTAAATTACAAACTTTGTCCATATGGTTTGGACCCAAGTTTTTGAAGATTATAATTTACTTCCATGCTTCCAATGGTTTGAAGGTTTCAATTTGGTTTTATGGTTTTGGCTTAGTTTTAGTTTGATCTTCGTCTTTTTAC

mRNA sequence

ACAGTCCGGAACTTCGTTTTCAATCTCTTCTTCTTGCTCTAGGGCTTTGTTTTTGCACTTCGATCGCTCGCCATGGATTTGCGGTTCCCTTACTCCCCGGCTGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATACTTAGCCCAGATGAGATTAGGCAAATGTCCGTGGTGCAAATTGAGCATGGTGAAACTACAGAGAGGGGTAAGCCAAAAGTAGGTGGTTTGAGTGACCCGCGGCTTGGTACAATTGACAGAAAAATGAAGTGTGAAACTTGCACTGCGAACATGGCTGAGTGCCCTGGGCACTTTGGGCACCTCGAGCTTGCCAAGCCAATGTTTCATATTGGATTTATGAAGACTGTGCTCACTATCATGCGTTCTGTTTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAGGACCCAAAATTTAAACAAGCGATGCGGATAAAGAATCCCAAGAACAGGCTTAAAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAAGGTGGAGATGAAATTGACGTTCAAGGCCAAGATTCAGATCAACCGGTGAAAAGGGGTCGGGGTGGCTGTGGTGCTCAGCAGCCTAAGATCTCAATTGATGGTATGAAAATGGTTGCGGAGTACAAGGCTCAGAGGAAGAAAAATGATGACCAGGAGCAGCTGCCTGAACCTGTGGAAAGAAAACAGACACTTAGTGCCGAAAGGGTTCTTGGTGTTCTGAAAAGAATAAGCGACGAAGATTGCAAACTCTTGGGCCTAAATCCAAAGTATGCTCGACCTGACTCGATGATTCTGCAAGTCCTTCCAATTCCTCCACCTCCTGTGAGACCATCGGTTATGATGGACACCTCATCTAGAAGTGAGGACGATCTAACTCATCAGTTGGCTATGATTATAAGGCACAACGAAAACCTCAGGAGGCAAGAAAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACGTATTTTGATAATGAATTACCTGGACTACCCAGGGCCACACAACGATCTGGGAGGCCCATTAAATCTATTTGTAGTAGGCTCAAGGCAAAGGAAGGCCGGATTAGGGGTAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGTACAGTTATAACACCTGATCCAACAATTAATATTGATGAACTGGGAGTGCCATGGAGCATTGCTTTGAACCTTACATATCCGGAGACTGTGACACCATATAATATAGAGAGATTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATTATACGAGATGACGGGCAGAGGCTTGATCTTCGATATCTTAAGAAAAGTAGTGATCATCATTTGGAGCTTGGGGCTGAAGTACTGGAGCTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCTGTCATGGGTATAGTGCAAGATACTCTGTTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACAAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACTGGAAAACAAGTTTTTAATCTTATCATACCAAAGCAGATTAATCTCTCGAGAACTTCTGCTTGGCATTCTGAGTCTGAATCTGGATTCATTACTCCGGGAGATACTTTTGTTAGGATTGAGAAGGGGGAACTGCTTTCTGGAACTCTTTGCAAGAAGACTCTCGGAACTTCAACTGGAAGTCTTATACATGTTATTTGGGAGGAGGTTGGTCCTGATGCAGCTAGAAAATTTCTTGGTCATACACAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATTTCTGCAGCTAAAAATGAAGTGAAAAATCTCATTAAGAAAGCCCAGGAGCGTAGTTTAGAGCCTGAACCTGGACGGACGATGATGGATTCATTTGAAAACAAAGTGAACCAGGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGTGCGCAAAAAAGTTTGTCAGAGAGTAACAATCTGAAAGCTATGGTTACTGCAGGATCCAAGGGAAGTTTTATCAATATCTCCCAGATGACTGCTTGTGTGGGGCAGCAAAATGTTGAAGGGAAGCGAATACCATTTGGTTTTATTGATCGAACTTTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAAAACTCATATCTTCGAGGATTGACCCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGATACATTCAGAGGAGGCTGGTGAAAGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCACTGGGTGATGTAATTCAGTTTCTTTATGGTGAAGATGGCATGGATTCTGTTTGGATAGAATCTCAGAAACTAGATTCTTTGAAGATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAGAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTTGAAGATTTAAAAACTATCCGTGAATTCCGCAACGTATTTGAGGCTGAAGTCCAAAAGCTTGAAGCAGACAGGTATCAATTGGGAACAGAAATTGCAACCACAGGTGAAAACTCGTGGCCAATGCCAGTTAACCTCAAAAGGCTTATTCAGAATGCACAAAAGACTTTCAAAATCGACTTTCGAAGGGCCTCTGATATGCATCCTATGGAAATTGTTGAAGCTATCGACAAACTTCAAGAAAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTTAGTGTGGAGGCTCAAAAGAACGCCACCCTTTTCTTCAATATATTGCTGCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACACGCGAAGCGTTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTTGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAATCCATTGGAGAGCCAGCGACTCAGATGACGCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAACGTCACCCTTGGTGTTCCCAGGTTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCATCTCTTTCAGTCTATCTAAAACCCGAAGCTAATAAAACTAAGGAGAGAGCCAAGACTGTTCAATGTGCTTTGGAATATACTACTCTTAGGAGTGTCACACAAGCTACGGAAGTATGGTATGATCCTGACCCAATGAGCACGATTATTGAAGAGGATATGGATTTTGTGAAATCCTACTATGAGATGCCAGATGAAGAAATTGCGCCCGAGAAAATCTCCCCATGGTTGCTCCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTTAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTTATACTTCGTATCCGTATCATGAACGATGAAGCCCCAAAGGGTGAGTTGAATGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGCAACATGCTAACTGAAATGGCTCTTCGAGGAATACCAGATATCAACAAGGTTTTCATTAAGTGTGGTAAAGTGAACAAGTTTGATGAGAATGAAGGGTTTAAGCCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCAGTTATTTGTCATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGGATTGAAGCAGTTCGACGTTCCCTCCTAGATGAATTGCGTGTTGTTATCTCCTTTGATGGATCTTACGTTAATTACCGGCATCTTGCCATCCTTTGTGACACCATGACTTATCGTGGCCACCTGATGGCTATTACCCGTCATGGTATCAACCGAAATGATACTGGACCGATGATGAGATGCTCATTTGAAGAAACTGTGGATATTTTACTTGATGCTGCAGTATATGCTGAAACTGATCACTTGAGGGGTGTTACTGAAAATATAATGTTGGGTCAACTGGCACCCATAGGAACAGGGGGTTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGATGGTCTGGAGTTTGGCATGACACCTTCCCGTTCCCCGATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAGTTATTTGTTGAGCCCGAATCTCCGACTCTCACCTATTAGTGATGCTCAATTTTCACCCTATGTTGGAGGAATGGCTTTCTCGCCTACTTCGTCTCCGGGATATAGCCCATCATCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCTACCTCCCCTGGTTATAGCCCCACTTCCCCGGGATATAGCCCTACCTCTCCTGGCTACAGTCCAACATCTCCAACCTACAGTCCTAGTTCGCCTGGTTACAGCCCGACTAGTCCTGCGTATTCTCCTACGAGTCCGNCCTACAGTCCTAGTTCGCCTGGTTACAGCCCGACTAGTCCTGCATATTCTCCTACGAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACATCTCCTAGTTACAGCCCAACATCTCCAAGTTACAGCCCCACTTCGCCGGCTTACAGTCCCACTTCTCCCGCTTATAGTCCCACTTCACCTGCATATAGCCCGACTTCACCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCTTCCTATAGCCCCACATCACCCTCCTACAGCCCAACATCCCCGTCCTACAGCCCTACATCACCTTCCTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGCCCCACATCACCGAGCTACAGTCCCACTTCGCCGAGCTATAGTCCGACATCACCAAGTTATAATCCTCAATCAGCTAAATACAGCCCATCACAGGCCTACTCACCCAGTAGTCCACGGTTGTCCCCATCAAGTCCCTATAGCCCAACCTCTCCGAACTACAGTCCAACATCACCATCATATTCACCTACGTCTCCGGCATATTCTCCGTCAAGCCCAACCTACAGTCCTAGCAGTCCATATAACACAGGAGCCAGCCCAGACTACAGCCCCAGTTCTCCACAATATAGTCCAAGTGCAGGATACTCACCTACTGCTCCTGGATATTCTCCGTCATCTACTAGTCAGTACACCTCACAAACAACTGACAAGGATGATAGGAGTAGAAAGGACGATAGGAGCAATCGATGAGGGTTGATATCAAATATCTTGGTTGAAGGAAGAGGGTGTTTTATATGTGGATTTCTCTTCTGTGTTGCTTGCCATCATTCTGGATCTCGGCTTGGAGAAGGGGCATTGTATCTTTGTAGCCGGATTCAGTATTTCGTTAAAAAGATTGGTCAGAAAGAATTAGAAGGAAGAACAATAGAGTTGACAAAATCAGAGAAGACTGATTTTGGTGTGCAGGTGTTCTAGATATAATTGATGACTGAACGACATAGCTCACGGTAATTTGTAAATGTCAGGCCCTCGAAAACCGAGAACGAGCAGAGGCAAAGAAACGACCCAACTCATCAAGGCATGCTGCTTGGAATGAGAATACATTATTTGATTTAGATTTGGCAGAGAACAGAACTTGTCTGAAGCTTTGTTTATTTTGCTATGAAGAATCTGTGAACACATTACAAGCAAAAACTGATTATCTTACAATTAGCCCGTCCGTTCCCCTGTATCTTTGTACCTTACCAAATAGCAAATGATTATGTAAAGAAAACTGTAATTTGTTTGACTCAGAAACTCTACTAAGAAATAGGCTTCTCAACTATGTATTAGTTTTTATTTGTAAATTGTACTGGTATCAAATGAACTTTCAGTATCAGTCTTAAAATTGTTAGGTTAAATTACAAACTTTGTCCATATGGTTTGGACCCAAGTTTTTGAAGATTATAATTTACTTCCATGCTTCCAATGGTTTGAAGGTTTCAATTTGGTTTTATGGTTTTGGCTTAGTTTTAGTTTGATCTTCGTCTTTTTAC

Coding sequence (CDS)

ATGGATTTGCGGTTCCCTTACTCCCCGGCTGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATACTTAGCCCAGATGAGATTAGGCAAATGTCCGTGGTGCAAATTGAGCATGGTGAAACTACAGAGAGGGGTAAGCCAAAAGTAGGTGGTTTGAGTGACCCGCGGCTTGGTACAATTGACAGAAAAATGAAGTGTGAAACTTGCACTGCGAACATGGCTGAGTGCCCTGGGCACTTTGGGCACCTCGAGCTTGCCAAGCCAATGTTTCATATTGGATTTATGAAGACTGTGCTCACTATCATGCGTTCTGTTTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAGGACCCAAAATTTAAACAAGCGATGCGGATAAAGAATCCCAAGAACAGGCTTAAAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAAGGTGGAGATGAAATTGACGTTCAAGGCCAAGATTCAGATCAACCGGTGAAAAGGGGTCGGGGTGGCTGTGGTGCTCAGCAGCCTAAGATCTCAATTGATGGTATGAAAATGGTTGCGGAGTACAAGGCTCAGAGGAAGAAAAATGATGACCAGGAGCAGCTGCCTGAACCTGTGGAAAGAAAACAGACACTTAGTGCCGAAAGGGTTCTTGGTGTTCTGAAAAGAATAAGCGACGAAGATTGCAAACTCTTGGGCCTAAATCCAAAGTATGCTCGACCTGACTCGATGATTCTGCAAGTCCTTCCAATTCCTCCACCTCCTGTGAGACCATCGGTTATGATGGACACCTCATCTAGAAGTGAGGACGATCTAACTCATCAGTTGGCTATGATTATAAGGCACAACGAAAACCTCAGGAGGCAAGAAAGAAATGGTTCTCCTGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACGTATTTTGATAATGAATTACCTGGACTACCCAGGGCCACACAACGATCTGGGAGGCCCATTAAATCTATTTGTAGTAGGCTCAAGGCAAAGGAAGGCCGGATTAGGGGTAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGTACAGTTATAACACCTGATCCAACAATTAATATTGATGAACTGGGAGTGCCATGGAGCATTGCTTTGAACCTTACATATCCGGAGACTGTGACACCATATAATATAGAGAGATTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATTATACGAGATGACGGGCAGAGGCTTGATCTTCGATATCTTAAGAAAAGTAGTGATCATCATTTGGAGCTTGGGGCTGAAGTACTGGAGCTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCTGTCATGGGTATAGTGCAAGATACTCTGTTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACAAAGGATGTTTTCATGAATATCTTGATGTGGTGGGAAGATTTTGACGGGAAAGTTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACTGGAAAACAAGTTTTTAATCTTATCATACCAAAGCAGATTAATCTCTCGAGAACTTCTGCTTGGCATTCTGAGTCTGAATCTGGATTCATTACTCCGGGAGATACTTTTGTTAGGATTGAGAAGGGGGAACTGCTTTCTGGAACTCTTTGCAAGAAGACTCTCGGAACTTCAACTGGAAGTCTTATACATGTTATTTGGGAGGAGGTTGGTCCTGATGCAGCTAGAAAATTTCTTGGTCATACACAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATTTCTGCAGCTAAAAATGAAGTGAAAAATCTCATTAAGAAAGCCCAGGAGCGTAGTTTAGAGCCTGAACCTGGACGGACGATGATGGATTCATTTGAAAACAAAGTGAACCAGGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGTGCGCAAAAAAGTTTGTCAGAGAGTAACAATCTGAAAGCTATGGTTACTGCAGGATCCAAGGGAAGTTTTATCAATATCTCCCAGATGACTGCTTGTGTGGGGCAGCAAAATGTTGAAGGGAAGCGAATACCATTTGGTTTTATTGATCGAACTTTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAAAACTCATATCTTCGAGGATTGACCCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACCTCTGAAACAGGATACATTCAGAGGAGGCTGGTGAAAGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCACTGGGTGATGTAATTCAGTTTCTTTATGGTGAAGATGGCATGGATTCTGTTTGGATAGAATCTCAGAAACTAGATTCTTTGAAGATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTATGAGTTTGAAGATGAGAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTTGAAGATTTAAAAACTATCCGTGAATTCCGCAACGTATTTGAGGCTGAAGTCCAAAAGCTTGAAGCAGACAGGTATCAATTGGGAACAGAAATTGCAACCACAGGTGAAAACTCGTGGCCAATGCCAGTTAACCTCAAAAGGCTTATTCAGAATGCACAAAAGACTTTCAAAATCGACTTTCGAAGGGCCTCTGATATGCATCCTATGGAAATTGTTGAAGCTATCGACAAACTTCAAGAAAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTTAGTGTGGAGGCTCAAAAGAACGCCACCCTTTTCTTCAATATATTGCTGCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACACGCGAAGCGTTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTTGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAATCCATTGGAGAGCCAGCGACTCAGATGACGCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAACGTCACCCTTGGTGTTCCCAGGTTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCATCTCTTTCAGTCTATCTAAAACCCGAAGCTAATAAAACTAAGGAGAGAGCCAAGACTGTTCAATGTGCTTTGGAATATACTACTCTTAGGAGTGTCACACAAGCTACGGAAGTATGGTATGATCCTGACCCAATGAGCACGATTATTGAAGAGGATATGGATTTTGTGAAATCCTACTATGAGATGCCAGATGAAGAAATTGCGCCCGAGAAAATCTCCCCATGGTTGCTCCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTTAGCATGGCGAATATTGCCGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTTATACTTCGTATCCGTATCATGAACGATGAAGCCCCAAAGGGTGAGTTGAATGATGAATCAGCTGAAGACGATGTGTTCTTGAAGAAAATTGAGAGCAACATGCTAACTGAAATGGCTCTTCGAGGAATACCAGATATCAACAAGGTTTTCATTAAGTGTGGTAAAGTGAACAAGTTTGATGAGAATGAAGGGTTTAAGCCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCAGTTATTTGTCATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGGATTGAAGCAGTTCGACGTTCCCTCCTAGATGAATTGCGTGTTGTTATCTCCTTTGATGGATCTTACGTTAATTACCGGCATCTTGCCATCCTTTGTGACACCATGACTTATCGTGGCCACCTGATGGCTATTACCCGTCATGGTATCAACCGAAATGATACTGGACCGATGATGAGATGCTCATTTGAAGAAACTGTGGATATTTTACTTGATGCTGCAGTATATGCTGAAACTGATCACTTGAGGGGTGTTACTGAAAATATAATGTTGGGTCAACTGGCACCCATAGGAACAGGGGGTTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAACTCCAGCTGCCTAGTTACATTGATGGTCTGGAGTTTGGCATGACACCTTCCCGTTCCCCGATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAGTTATTTGTTGAGCCCGAATCTCCGACTCTCACCTATTAGTGATGCTCAATTTTCACCCTATGTTGGAGGAATGGCTTTCTCGCCTACTTCGTCTCCGGGATATAGCCCATCATCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCTACCTCCCCTGGTTATAGCCCCACTTCCCCGGGATATAGCCCTACCTCTCCTGGCTACAGTCCAACATCTCCAACCTACAGTCCTAGTTCGCCTGGTTACAGCCCGACTAGTCCTGCGTATTCTCCTACGAGTCCGNCCTACAGTCCTAGTTCGCCTGGTTACAGCCCGACTAGTCCTGCATATTCTCCTACGAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCCACCTCTCCAAGTTACAGCCCCACATCTCCTAGTTACAGCCCAACATCTCCAAGTTACAGCCCCACTTCGCCGGCTTACAGTCCCACTTCTCCCGCTTATAGTCCCACTTCACCTGCATATAGCCCGACTTCACCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACTTCGCCTTCCTATAGCCCCACATCACCCTCCTACAGCCCAACATCCCCGTCCTACAGCCCTACATCACCTTCCTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGCCCCACATCACCGAGCTACAGTCCCACTTCGCCGAGCTATAGTCCGACATCACCAAGTTATAATCCTCAATCAGCTAAATACAGCCCATCACAGGCCTACTCACCCAGTAGTCCACGGTTGTCCCCATCAAGTCCCTATAGCCCAACCTCTCCGAACTACAGTCCAACATCACCATCATATTCACCTACGTCTCCGGCATATTCTCCGTCAAGCCCAACCTACAGTCCTAGCAGTCCATATAACACAGGAGCCAGCCCAGACTACAGCCCCAGTTCTCCACAATATAGTCCAAGTGCAGGATACTCACCTACTGCTCCTGGATATTCTCCGTCATCTACTAGTCAGTACACCTCACAAACAACTGACAAGGATGATAGGAGTAGAAAGGACGATAGGAGCAATCGATGA

Protein sequence

MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR

Homology

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy Swiss-Prot
Match: P18616 (DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3)

HSP 1 Score: 3028.8 bits (7851), Expect = 0.0e+00
Identity = 1558/1867 (83.45%), Postives = 1670/1867 (89.45%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MD RFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPKVGGLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEI-DVQGQDSDQPVKRGRGGCGAQQPKIS 180
            FKQAM+IKNPKNRLKKILDACKNKTKC+GGD+I DVQ   +D+PVK+ RGGCGAQQPK++
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYA 240
            I+GMKM+AEYK QRKKND+ +QLPEP ERKQTL A+RVL VLKRISD DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPD MIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELG------------------------------------- 480
            RDDGQRLDLRYLKKSSD HLELG                                     
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  --------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQD 540
                                            AEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQI 600
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGKVPAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 660
            NL R SAWH+++E+GFITPGDT VRIE+GELL+GTLCKKTLGTS GSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAV+CHEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGLEFGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSP+YLLSPN+RLSP+SDAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPA 1620
            TSPGYSPTSPG                            YSPTSP YSPSSPGYSPTSPA
Sbjct: 1561 TSPGYSPTSPG----------------------------YSPTSPTYSPSSPGYSPTSPA 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1680
            YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1740
            SP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY
Sbjct: 1681 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1740

Query: 1741 SPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPA 1798
            SPTSPSY PTSPSYNPQSAKYSPS AYSPS+ RLSP+SPYSPTSPNYSPTSPSYSPTSP+
Sbjct: 1741 SPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPS 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 2000.7 bits (5182), Expect = 0.0e+00
Identity = 1067/1743 (61.22%), Postives = 1304/1743 (74.81%), Query Frame = 0


Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKM 64
            FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK GGL DP +GTID+  
Sbjct: 5    FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQA 124
            +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D  +  F+QA
Sbjct: 65   RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124

Query: 125  MRIKNPKNRLKKILDACKNKTKCE-GGDE-----IDVQGQDSDQPVKRGRGGCGAQQPKI 184
            ++I+N K+RL  ++D CKNK  C  GG+E     +    ++ D+PVK   GGCG   PKI
Sbjct: 125  LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVK--HGGCGNVLPKI 184

Query: 185  SIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKY 244
            + + +K++ E+K         +   E +E+K  LSAERVL +LKRI DED + +G+NP +
Sbjct: 185  TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 244

Query: 245  ARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 304
            AR D MI  VLP+PPPPVRPS+MMDTS+R EDDLTH+LA I++ N  L+RQE+NG+PAHI
Sbjct: 245  ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 304

Query: 305  ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 364
            I+E  Q LQFH+ATY DNE+PGLP+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFS
Sbjct: 305  IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 364

Query: 365  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 424
            ARTVIT DP ++ID++GVP SIALNLTYPETVTP+NI++++EL+  GP   P   GAKYI
Sbjct: 365  ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHP---GAKYI 424

Query: 425  IRDDGQRLDLRYLKKSSDHHLELG------------------------------------ 484
            IR+DG R DLR++KK SD HLE G                                    
Sbjct: 425  IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 484

Query: 485  ---------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQ 544
                                             AEV+E+MMVP+ IVSPQSNRPVMGIVQ
Sbjct: 485  STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 544

Query: 545  DTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQ 604
            DTLLG R  TKRD F+ KD+ MNILMW   +DGKVP PAILKP+ LWTGKQ+F+LIIP  
Sbjct: 545  DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-D 604

Query: 605  INLSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 664
            INL R ++ H++ E    + GDT V IE+GELL+G LCK++LG + GS+IHV+  E G D
Sbjct: 605  INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHD 664

Query: 665  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQER 724
              R F+  TQ +VN+WL+   F++GIGDTIAD+ATM K+  TIS+AKN+VK LI KAQ +
Sbjct: 665  TCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK 724

Query: 725  SLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 784
              E +PG++++++FE KVNQVLNKARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQ
Sbjct: 725  QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQ 784

Query: 785  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844
            M ACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 785  MMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844

Query: 845  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 904
            REGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++E+
Sbjct: 845  REGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVEN 904

Query: 905  QKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR 964
            Q +DSL+    E ER++R++ +  ++   +M P  +E ++     R+  E E +++++DR
Sbjct: 905  QSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDR 964

Query: 965  YQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKV 1024
              L  EI  +GE +WP+PVNL+RLI NAQK F ID RR SD++P  +V  I+KL  RLK+
Sbjct: 965  SLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKI 1024

Query: 1025 VPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIE 1084
            +   D             E   NAT+ F+IL+RSTFASKRVL E+RLT +AF WV GEIE
Sbjct: 1025 IATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1084

Query: 1085 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKR 1144
            S+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK+
Sbjct: 1085 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQ 1144

Query: 1145 IKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFV 1204
            +KTPSL++YLKP   +  +RAK V+  LEYTTL +VT ATE++YDPDP +TII ED +FV
Sbjct: 1145 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1204

Query: 1205 KSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDN 1264
             SY+E+PDEEI    +SPWLLRIEL+R M+ DKKL+MA+I + +  +F   L CIF+DDN
Sbjct: 1205 NSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDN 1264

Query: 1265 AEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC-GK 1324
            AEKLILRIR++  +  KG  ND   +DD FL++IESNML+EM LRGI  I KVF++   K
Sbjct: 1265 AEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDK 1324

Query: 1325 VNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSL 1384
            + K  EN GF    EW+LDT+GV+LL V+ H DVD  RTTSN ++E+I+VLGIEAVR +L
Sbjct: 1325 IPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 1384

Query: 1385 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1444
            L ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+I
Sbjct: 1385 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 1444

Query: 1445 LLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLP-----SYID 1504
            L+DAA+++ETD ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP     SY D
Sbjct: 1445 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD 1504

Query: 1505 GLEFGMTPSRSPISG--TPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSP 1564
                  TPS S   G  TP+H    +P         LSP ++     + G  + S  +SP
Sbjct: 1505 -TPGSQTPSYSYGDGSTTPFHNPYDAP---------LSPFNET----FRGDFSPSAMNSP 1564

Query: 1565 GYSP-----SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1624
            GY+      SS  Y P SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTS
Sbjct: 1565 GYNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1624

Query: 1625 PAYSPTSPXYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1651
            P+YSPTSP YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1625 PSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1955.6 bits (5065), Expect = 0.0e+00
Identity = 1084/1908 (56.81%), Postives = 1364/1908 (71.49%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVGGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+GGL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNRLKKILDACKNKTKCEGGDEID----VQGQDSDQPV--KRGRGGCGAQQPK 187
            A     PK RL  + D CK K  CEGG+E+D    V+  + D+ +  ++G GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  LS ERV  + KRISDE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+ MI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELG----------------------------------- 487
            IIRD+G R+DLR+  K SD HL+ G                                   
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  ----------------------------------AEVLELMMVPKCIVSPQSNRPVMGIV 547
                                              AE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGKVP PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLSRTSAWHSESESG----FITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 667
             IN  RT + H + E       I+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 E--------FGMTPSRSPISG-----TPYHEGMMSPSYLLSPNL---------RLSPISD 1567
                     FG  P  SP+ G     TP+++G        SP++           SP + 
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 AQFSPYVGGM--AFSPT--------------------SSPGYSPSSPGYSPSSP-GYSPT 1627
            +  S +  G   A+SPT                     SP YSP+SP Y P SP GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1687
            SP YSPTSP YSPTSP YSPTSP YSP+SP YSPTSP+YSPTSP YSP+SP YSPTSP+Y
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1777
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy Swiss-Prot
Match: P08775 (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 1955.6 bits (5065), Expect = 0.0e+00
Identity = 1084/1908 (56.81%), Postives = 1364/1908 (71.49%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVGGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+GGL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNRLKKILDACKNKTKCEGGDEID----VQGQDSDQPV--KRGRGGCGAQQPK 187
            A     PK RL  + D CK K  CEGG+E+D    V+  + D+ +  ++G GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  LS ERV  + KRISDE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+ MI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELG----------------------------------- 487
            IIRD+G R+DLR+  K SD HL+ G                                   
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  ----------------------------------AEVLELMMVPKCIVSPQSNRPVMGIV 547
                                              AE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGKVP PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLSRTSAWHSESESG----FITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 667
             IN  RT + H + E       I+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 E--------FGMTPSRSPISG-----TPYHEGMMSPSYLLSPNL---------RLSPISD 1567
                     FG  P  SP+ G     TP+++G        SP++           SP + 
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 AQFSPYVGGM--AFSPT--------------------SSPGYSPSSPGYSPSSP-GYSPT 1627
            +  S +  G   A+SPT                     SP YSP+SP Y P SP GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1687
            SP YSPTSP YSPTSP YSPTSP YSP+SP YSPTSP+YSPTSP YSP+SP YSPTSP+Y
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1777
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy Swiss-Prot
Match: P24928 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1953.3 bits (5059), Expect = 0.0e+00
Identity = 1087/1932 (56.26%), Postives = 1373/1932 (71.07%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVGGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+GGL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNRLKKILDACKNKTKCEGGDEID----VQGQDSDQPV--KRGRGGCGAQQPK 187
            A     PK RL  + D CK K  CEGG+E+D    V+  + D+ +  ++G GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  LS ERV  + KRISDE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+ MI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELG----------------------------------- 487
            IIRD+G R+DLR+  K SD HL+ G                                   
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  ----------------------------------AEVLELMMVPKCIVSPQSNRPVMGIV 547
                                              AE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGKVP PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLSRTSAWHSESESG----FITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 667
             IN  RT + H + E       I+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 E--------FGMTPSRSPISG-----TPYHEGM--------------------------- 1567
                     FG  P  SP+ G     TP+++G                            
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 ---------MSPSYLLSPNLRLSPISDAQFSPYVGGM---AFSPTSSPGYSPSSP-GYSP 1627
                      SP++  +P    SP   + + P  GG    ++SPT SP Y P SP GY+P
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT-SPAYEPRSPGGYTP 1630

Query: 1628 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPG 1687
             SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSP YSP+SP 
Sbjct: 1631 QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1690

Query: 1688 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1747
            YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPT
Sbjct: 1691 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1750

Query: 1748 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1788
            SP+YSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP+Y+PTSP YSPTSP Y
Sbjct: 1751 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1810

[Close]

BLAST of Cp4.1LG08g13070 vs. NCBI nr
Match: XP_023540732.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 3459 bits (8970), Expect = 0.0
Identity = 1799/1868 (96.31%), Postives = 1799/1868 (96.31%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
Sbjct: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. NCBI nr
Match: XP_022928584.1 (DNA-directed RNA polymerase II subunit 1 [Cucurbita moschata] >XP_022928634.1 DNA-directed RNA polymerase II subunit 1 [Cucurbita moschata])

HSP 1 Score: 3423 bits (8876), Expect = 0.0
Identity = 1782/1868 (95.40%), Postives = 1785/1868 (95.56%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
Sbjct: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISD+DCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. NCBI nr
Match: XP_022971615.1 (DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima] >XP_022971616.1 DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima])

HSP 1 Score: 3420 bits (8868), Expect = 0.0
Identity = 1781/1868 (95.34%), Postives = 1784/1868 (95.50%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQAMRI+NPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISD+DCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. NCBI nr
Match: KAG6596260.1 (DNA-directed RNA polymerase II subunit rpb1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 3386 bits (8780), Expect = 0.0
Identity = 1759/1846 (95.29%), Postives = 1763/1846 (95.50%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 32   MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 91

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 92   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 151

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
Sbjct: 152  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 211

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISD+DCKLLGLNPKYAR
Sbjct: 212  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 271

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 272  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 331

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 332  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 391

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 392  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 451

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 452  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 511

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 512  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 571

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 572  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 631

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 632  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 691

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 692  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 751

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 752  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 811

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 812  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 871

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 872  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 931

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 932  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 991

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 992  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1051

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1052 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1111

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1112 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1171

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
Sbjct: 1172 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1231

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1232 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1291

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1292 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1351

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1352 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1411

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1412 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1471

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
Sbjct: 1472 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1531

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1532 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1591

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1592 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1651

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTS
Sbjct: 1652 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1711

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            P+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1712 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1771

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1777
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1772 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1831

[Close]

BLAST of Cp4.1LG08g13070 vs. NCBI nr
Match: XP_022145356.1 (DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145357.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145358.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145359.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145360.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia])

HSP 1 Score: 3379 bits (8762), Expect = 0.0
Identity = 1754/1868 (93.90%), Postives = 1776/1868 (95.07%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQA+RIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQ+S+QPVK+GRGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            L+RTSAWH+ESE+GFITPGDTFVRIEKGEL+SGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy TrEMBL
Match: A0A6J1ELE9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435248 PE=3 SV=1)

HSP 1 Score: 3423 bits (8876), Expect = 0.0
Identity = 1782/1868 (95.40%), Postives = 1785/1868 (95.56%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
Sbjct: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISD+DCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy TrEMBL
Match: A0A6J1I682 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470290 PE=3 SV=1)

HSP 1 Score: 3420 bits (8868), Expect = 0.0
Identity = 1781/1868 (95.34%), Postives = 1784/1868 (95.50%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQAMRI+NPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
Sbjct: 121  FKQAMRIRNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISD+DCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy TrEMBL
Match: A0A0A0L655 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G002510 PE=3 SV=1)

HSP 1 Score: 3399 bits (8814), Expect = 0.0
Identity = 1760/1867 (94.27%), Postives = 1783/1867 (95.50%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQA+RIKNPKNRL+KILDACKNKTKCEGGDEIDVQGQDSDQPVK+ RGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            +GMKM AEYKAQRKKNDD EQLPEPVERKQTL+AERVLG+LKRI+DEDCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMN LMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            L+RTSAWHSESE+G ITPGDTFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP YSP+SP YSPTSP+Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSPAYSPTSP+YSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1798
            PTSPSYSPTSPSYNPQSAKYSPSQAY PSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy TrEMBL
Match: A0A6J1CV04 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014830 PE=3 SV=1)

HSP 1 Score: 3379 bits (8762), Expect = 0.0
Identity = 1754/1868 (93.90%), Postives = 1776/1868 (95.07%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180
            FKQA+RIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQ+S+QPVK+GRGGCGAQQPKISI
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240
            DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELG-------------------------------------- 480
            DDGQRLDLRYLKKSSDHHLELG                                      
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  -------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
                                           AEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
            L+RTSAWH+ESE+GFITPGDTFVRIEKGEL+SGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP              +Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP--------------SY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1799
            PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY
Sbjct: 1741 PTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAY 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. ExPASy TrEMBL
Match: A0A5D3CJC8 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00440 PE=3 SV=1)

HSP 1 Score: 3367 bits (8730), Expect = 0.0
Identity = 1755/1903 (92.22%), Postives = 1776/1903 (93.33%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKV GLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAMRIKNPKNRLKKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQA+RIKNPKNRL+KILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISIDGMKMVAEYKAQRKKNDDQEQLPEP 240
            KCEGGDEIDVQGQDSDQPVK+ RGGCGAQQPKI+I+GMKM AEYKAQRKKNDDQEQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLSAERVLGVLKRISDEDCKLLGLNPKYARPDSMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTL+AERVLG+LKRI+D+DCKLLGLNPKYARPD MILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG--- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG   
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  ------AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600
                  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQINLSRTSAWHSESESGFITPGDTFVRI 660
            WEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQINL+RTSAWHSESE+G +TPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720
            EKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMKKKEFERIFRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEL DESAEDDVFLKKIES
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDVDAR 1380
            NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAV+CHEDVDAR
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTPYHEGMMSPSYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTPYHEGMMSP+YLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
            SPSSPGYSPTSPAYSPTSP              +YSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSP--------------SYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
            PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1681 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740

Query: 1741 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQA 1799
            PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQA
Sbjct: 1741 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQA 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 3028.8 bits (7851), Expect = 0.0e+00
Identity = 1558/1867 (83.45%), Postives = 1670/1867 (89.45%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
            MD RFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPKVGGLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEI-DVQGQDSDQPVKRGRGGCGAQQPKIS 180
            FKQAM+IKNPKNRLKKILDACKNKTKC+GGD+I DVQ   +D+PVK+ RGGCGAQQPK++
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYA 240
            I+GMKM+AEYK QRKKND+ +QLPEP ERKQTL A+RVL VLKRISD DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPD MIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELG------------------------------------- 480
            RDDGQRLDLRYLKKSSD HLELG                                     
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  --------------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQD 540
                                            AEVLELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQI 600
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGKVPAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 660
            NL R SAWH+++E+GFITPGDT VRIE+GELL+GTLCKKTLGTS GSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAV+CHEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGLEFGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSP+YLLSPN+RLSP+SDAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPXYSPSSPGYSPTSPA 1620
            TSPGYSPTSPG                            YSPTSP YSPSSPGYSPTSPA
Sbjct: 1561 TSPGYSPTSPG----------------------------YSPTSPTYSPSSPGYSPTSPA 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1680
            YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1740
            SP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY
Sbjct: 1681 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1740

Query: 1741 SPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPA 1798
            SPTSPSY PTSPSYNPQSAKYSPS AYSPS+ RLSP+SPYSPTSPNYSPTSPSYSPTSP+
Sbjct: 1741 SPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPS 1800

[Close]

BLAST of Cp4.1LG08g13070 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 585.5 bits (1508), Expect = 1.5e-166
Identity = 445/1467 (30.33%), Postives = 694/1467 (47.31%), Query Frame = 0


Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVGGLSDPRLGTIDRKMKCETCTAN 73
            K++ + F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAMR-IKNPK 133
               CPGH+G+L+L  P++++G+   +L I++ +C  CS +L+DE+   ++  +R ++NP+
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK--LYEDHLRKMRNPR 141

Query: 134  -NRLKK--ILDACKNKTKCEGGDEIDVQGQDS--DQPVKR--GRGGCGAQQPKISIDGMK 193
               LKK  +  A   K        I    +    +  VK+   + G G    +  I G +
Sbjct: 142  MEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGE 201

Query: 194  MVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYARPDSM 253
             + E K+             P+     L    VLG+ KR+SD+DC+LL +     RP+++
Sbjct: 202  -IDECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI---AYRPENL 261

Query: 254  ILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERNGSPAHIISEF 313
            I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +   SP ++  + 
Sbjct: 262  IITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM--QV 321

Query: 314  AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 373
               +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL GKRV+F+ RTV
Sbjct: 322  WDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTV 381

Query: 374  ITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY----- 433
            I+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG    +Y     
Sbjct: 382  ISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSS 441

Query: 434  --IIRDDGQRL-DLRYLKKSSDHHLELG-------------------------------- 493
              ++ D  +R+ D   +    D HL+ G                                
Sbjct: 442  RTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 501

Query: 494  ---------------------------AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 553
                                        E + LM V   + +P++   ++   QD L   
Sbjct: 502  ESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSS 561

Query: 554  RKITKRDTFITKDVFMNILMWWEDFDGKV--PAPAILKPQPLWTGKQVFNLI------IP 613
              IT++DTF  +  F  I  +  D    +  P P ILKP  LWTGKQ+F+++      I 
Sbjct: 562  FLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIR 621

Query: 614  KQINLSRTSAWHSESESGF---ITPGDTFVRIEKGELLSGTLCKKTLGT-STGSLIHVIW 673
              + L+       + E GF   +   D +V     EL+SG L K TLG  +   L  ++ 
Sbjct: 622  VYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLYSILL 681

Query: 674  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLI 733
             +    AA   +     L   W+  + FSIGI D        ++  ++I    ++    I
Sbjct: 682  RDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKI 741

Query: 734  KKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGS 793
            ++    +L+ + G     S E ++  +LN  R+  G +    L   N+   M   GSKGS
Sbjct: 742  EEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGS 801

Query: 794  FINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 853
             INISQM ACVGQQ V G R P GFIDR+LPHF +    P ++GFV NS+  GLT  EFF
Sbjct: 802  PINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFF 861

Query: 854  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 913
            FH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD TVRN+ G ++QF YG+DGMD
Sbjct: 862  FHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 921

Query: 914  SVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQ 973
               +E +    L      F R+F    + +   P    P       +  E    FE E+ 
Sbjct: 922  PALMEGKDGAPL-----NFNRLF---LKVQATCP----PRSHHTYLSSEELSQKFEEEL- 981

Query: 974  KLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKL 1033
             +  D+ ++ T+                                         V+++ + 
Sbjct: 982  -VRHDKSRVCTD---------------------------------------AFVKSLREF 1041

Query: 1034 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRF 1093
               L V     P              +L +++  + + L+ +          +     R+
Sbjct: 1042 VSLLGVKSASPP-------------QVLYKASGVTDKQLEVF----------VKICVFRY 1101

Query: 1094 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKT 1153
             +  +  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+ EIIN +K I T
Sbjct: 1102 REKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNIST 1161

Query: 1154 PSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSY 1213
            P +S  L+     T   A+ V+  +E TTL  V ++ EV       S  I  D   +   
Sbjct: 1162 PVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKII--- 1221

Query: 1214 YEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEK 1273
                  E A   I+PW ++  + +   +           K+N   D+D            
Sbjct: 1222 ------EEACLSITPWSVKNSILKTPRI-----------KLN---DND------------ 1281

Query: 1274 LILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKF 1333
                IR+++       + D+S     F      N+L  + + GI  + +V +        
Sbjct: 1282 ----IRVLDTGLDITPVVDKSRAH--FNLHNLKNVLPNIIVNGIKTVERVVV----AEDM 1341

Query: 1334 DENEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDEL 1391
            D+++    + +W L  EG NLLAV+    ++ R TTSN+++EV + LGIEA R +++DE+
Sbjct: 1342 DKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEI 1353

[Close]

BLAST of Cp4.1LG08g13070 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 557.4 bits (1435), Expect = 4.3e-158
Identity = 446/1494 (29.85%), Postives = 690/1494 (46.18%), Query Frame = 0


Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVGGLSDPRLGTIDRKMKCETCTAN 73
            K++ + F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVC----------FNCSKILVDEEDPKFK 133
               CPGH+G+L+L  P++++G+   +L I++ +C            CS +L+DE+   ++
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRCSNMLLDEK--LYE 141

Query: 134  QAMR-IKNPK-NRLKK--ILDACKNKTKCEGGDEIDVQGQDS--DQPVKR--GRGGCGAQ 193
              +R ++NP+   LKK  +  A   K        I    +    +  VK+   + G G  
Sbjct: 142  DHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGIS 201

Query: 194  QPKISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGL 253
              +  I G + + E K+             P+     L    VLG+ KR+SD+DC+LL +
Sbjct: 202  HDRSKIHGGE-IDECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI 261

Query: 254  NPKYARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERN 313
                 RP+++I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +  
Sbjct: 262  ---AYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPT 321

Query: 314  GSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 373
             SP ++  +    +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL G
Sbjct: 322  SSPKNM--QVWDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSG 381

Query: 374  KRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 433
            KRV+F+ RTVI+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG 
Sbjct: 382  KRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGA 441

Query: 434  TGAKY-------IIRDDGQRL-DLRYLKKSSDHHLELG---------------------- 493
               +Y       ++ D  +R+ D   +    D HL+ G                      
Sbjct: 442  RNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRAR 501

Query: 494  -------------------------------------AEVLELMMVPKCIVSPQSNRPVM 553
                                                  E + LM V   + +P++   ++
Sbjct: 502  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILV 561

Query: 554  GIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKV--PAPAILKPQPLWTGKQVFN 613
               QD L     IT++DTF  +  F  I  +  D    +  P P ILKP  LWTGKQ+F+
Sbjct: 562  ASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFS 621

Query: 614  LI------IPKQINLSRTSAWHSESESGF---ITPGDTFVRIEKGELLSGTLCKKTLGT- 673
            ++      I   + L+       + E GF   +   D +V     EL+SG L K TL   
Sbjct: 622  VLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLALD 681

Query: 674  -------STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATME 733
                   +   L  ++  +    AA   +     L   W+  + FSIGI D        +
Sbjct: 682  IFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSK 741

Query: 734  KINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSL 793
            +  ++I    ++    I++    +L+ + G     S E ++  +LN  R+  G +    L
Sbjct: 742  ERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGL 801

Query: 794  SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESR 853
               N+   M   GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +    P ++
Sbjct: 802  HWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAK 861

Query: 854  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 913
            GFV NS+  GLT  EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD TVR
Sbjct: 862  GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVR 921

Query: 914  NSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVE 973
            N+ G ++QF YG+DGMD   +E +    L      F R+F    + +   P    P    
Sbjct: 922  NASGCILQFTYGDDGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP----PRSHH 981

Query: 974  DLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFR 1033
               +  E    FE E+  +  D+ ++ T+                               
Sbjct: 982  TYLSSEELSQKFEEEL--VRHDKSRVCTD------------------------------- 1041

Query: 1034 RASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYR 1093
                      V+++ +    L V     P              +L +++  + + L+ + 
Sbjct: 1042 --------AFVKSLREFVSLLGVKSASPP-------------QVLYKASGVTDKQLEVF- 1101

Query: 1094 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1153
                     +     R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1102 ---------VKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 1161

Query: 1154 GVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDP 1213
            GVPR+ EIIN +K I TP +S  L+     T   A+ V+  +E TTL  V ++ EV    
Sbjct: 1162 GVPRINEIINASKNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEVLMTS 1221

Query: 1214 DPMSTIIEEDMDFVKSYYEMPDEEIAPEKISPWLL--------RIELNRE--MMVDKKLS 1273
               S  I  D   +         E A   I+PW +        RI+LN     ++D  L 
Sbjct: 1222 TSASVRIILDNKII---------EEACLSITPWSVKNSILKTPRIKLNDNDIRVLDTGLD 1281

Query: 1274 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1333
            +  + +K            FN  N + ++  I I+N                  +K +E 
Sbjct: 1282 ITPVVDKSRAH--------FNLHNLKNVLPNI-IVNG-----------------IKTVER 1341

Query: 1334 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVICHEDVDAR 1391
             ++ E       D++K+  K              P   W       NLLAV+    ++ R
Sbjct: 1342 VVVAE-------DMDKMLAKL-----------IIPCPRWAC----TNLLAVMGTPGINGR 1368

[Close]

BLAST of Cp4.1LG08g13070 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 358.6 bits (919), Expect = 2.9e-98
Identity = 417/1761 (23.68%), Postives = 668/1761 (37.93%), Query Frame = 0


Query: 3    LRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKVGGLSDPRLGTID 62
            L FP   ++V  V  V+F  ++  ++R+ S +++      +  G P  GGL D +LG  D
Sbjct: 17   LLFPMGASQV--VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKD 76

Query: 63   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKF 122
             K  C +C      CPGH GH+EL  P++H      +   ++  CF C   +   ED + 
Sbjct: 77   DKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVE- 136

Query: 123  KQAMRIK---------------NPKNRLKKILDACKNKTKCEGGDEI---DVQGQ----- 182
            +   ++K               N   + K   ++C++    +  +E    DV+ Q     
Sbjct: 137  RAVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSL 196

Query: 183  --------------------------------------------DSD------QPVKRGR 242
                                                        DSD      + +K  +
Sbjct: 197  QFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKK 256

Query: 243  GGCGAQQP----KISIDGMKMVAE-YKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKR 302
                 + P       ID +  V +  K  R+K+ +     E    K+ L    V  +LK 
Sbjct: 257  STSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKH 316

Query: 303  I---SDEDCKLLG----LNPKYARPDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 362
            +     E C  +G       +        L+ + +PP   RP       S  E   T  L
Sbjct: 317  LWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPT-TGGDSVMEHPQTVGL 376

Query: 363  AMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC 422
              +I  N  L     N      +    + LQ  +   FD++      AT +S R    IC
Sbjct: 377  NKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSK-----TATVQSQRDSSGIC 436

Query: 423  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 482
              L+ KEG  R  +MGKRV+ + R+VI+PDP I ++++G+P   AL LTYPE VTP+N+E
Sbjct: 437  QLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVE 496

Query: 483  RLKELVEYGPHPPPGKT--------------------------GAKYIIRDDGQRLDLRY 542
            +L+E +  GP   PG T                           ++    + G+  D+ +
Sbjct: 497  KLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINF 556

Query: 543  LKKSSDHHLELG------------------------------------------------ 602
              K+   H+  G                                                
Sbjct: 557  EGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDE 616

Query: 603  ------------AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVF 662
                        AE   ++        P +  P+  ++QD ++    +TKRDTF+ KD F
Sbjct: 617  MNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHF 676

Query: 663  MNIL-------MWWEDFDGK---------------VPAPAILKPQPLWTGKQVFNLIIPK 722
              +L       M    F G+                  PAILKP PLWTGKQV   ++ +
Sbjct: 677  NQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQ 736

Query: 723  ----------------QINLSRTSAWHSESESGFITP------------GDTFVRIEKGE 782
                             ++  +  +   +  SG +T              +  + I K E
Sbjct: 737  ITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNE 796

Query: 783  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 842
             + G + K     +   L+H + E  G +AA   L     L   +L  + F+ G+ D I 
Sbjct: 797  FVCGVIDKAQF--ADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLII 856

Query: 843  DAATMEKINETISAAKNEVKNLIKKA----QERSLEPEPGRTMMD--------------- 902
                 E+  + +   +N  + +++K      +  ++P+  R+ ++               
Sbjct: 857  LKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLD 916

Query: 903  -SFENKVNQVLNK-ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 962
             S  N +NQ  +K   +D  S         N +  M  +G+KGS +N  Q+++ +GQQ++
Sbjct: 917  RSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDL 976

Query: 963  EGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 1022
            EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVK
Sbjct: 977  EGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1036

Query: 1023 TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKK 1082
            TS +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D                
Sbjct: 1037 TSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD---------------- 1096

Query: 1083 KEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATT 1142
                 + R  F                 ++  +E     +  +QK   D          +
Sbjct: 1097 -----VHRSSF-----------------IEKFKELTINQDMVLQKCSED--------MLS 1156

Query: 1143 GENSW--PMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLS 1202
            G +S+   +P++LK+    A+K                 VEA+  + ER+          
Sbjct: 1157 GASSYISDLPISLKK---GAEK----------------FVEAM-PMNERI---------- 1216

Query: 1203 VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1262
                               ASK V  E  L           ++S+F  SL  PGE +G +
Sbjct: 1217 -------------------ASKFVRQEELLKL---------VKSKFFASLAQPGEPVGVL 1276

Query: 1263 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKRIKTPSLSVYLKPEANK 1322
            AAQS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+   A  IKTP ++  L     K
Sbjct: 1277 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLL--KGK 1336

Query: 1323 TKERAKTVQCALEYTTLRSVTQATEV---------------------WYDPD--PMST-I 1382
            TKE A  +   L   T+  + ++ E+                      Y P+  P  T I
Sbjct: 1337 TKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDI 1396

Query: 1383 IEEDMDFVKSYYEMPDEEIAPEKISPWLLRI--------------ELNREMMVDKKLS-- 1391
             EED +       +   E A E     L RI              E + +  V  K +  
Sbjct: 1397 TEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNED 1456

[Close]

BLAST of Cp4.1LG08g13070 vs. TAIR 10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 137/322 (42.55%), Postives = 164/322 (50.93%), Query Frame = 0


Query: 1469 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1528
            T SPG SP SP  SPS P   P+ P  +  SPG SP SP   P+ P+ +P SPG  PTSP
Sbjct: 416  TPSPGGSPPSPSISPSPPITVPSPP--TTPSPGGSPPSPSIVPSPPSTTP-SPGSPPTSP 475

Query: 1529 AYSPT---SPXYSPS--SPGYSPTSPAYSPT---SPSYSPTSPS--YSPTSPSYSPTSPS 1588
              +PT   SP  SP+  +PG SP S   +PT   SP  SPT+PS   SP SPS SP+ P 
Sbjct: 476  T-TPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPSPPI 535

Query: 1589 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1648
              P+ PS +PTSP   P+  + +P+SP  SP +PS  PT  S    SP   P+ P   P+
Sbjct: 536  TVPSPPS-TPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSPPFTGPS 595

Query: 1649 SPSY-SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPS--YNPQSAKYSPSQ 1708
             PS  SP  P   P+ P   PT     P+SP  S  +P YSP  PS  Y P      P  
Sbjct: 596  PPSSPSPPLPPVIPSPPIVGPT-----PSSPPPSTPTPVYSPPPPSTGYPPP----PPFT 655

Query: 1709 AYSPSSPRLSPSSPYSPTSPNYSPTSP-SYSPTSPAYSPSSPTYSPSSPYNTGASPDYSP 1768
             YSP SP   P   +SP SP+  P  P +YSP  P   P   TY P  P         SP
Sbjct: 656  GYSPPSPPPPPPPTFSP-SPSIPPPPPQTYSPFPPPPPPPPQTYYPPQP---------SP 713

Query: 1769 SSPQYSPSAGYSPTAP-GYSPS 1776
            S P  SP  G  P +P  Y PS
Sbjct: 716  SQPPQSPIYGTPPPSPIPYLPS 713

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P18616	0.0e+00	83.45	DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
P35084	0.0e+00	61.22	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]
P11414	0.0e+00	56.81	DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=PO...	[more]
P08775	0.0e+00	56.81	DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a P...	[more]
P24928	0.0e+00	56.26	DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE...	[more]

BLAST of Cp4.1LG08g13070 vs. NCBI nr


Match Name	Identity	Description
XP_023540732.1	96.31	DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita pepo subsp. ...	[more]
XP_022928584.1	95.40	DNA-directed RNA polymerase II subunit 1 [Cucurbita moschata] >XP_022928634.1 DN...	[more]
XP_022971615.1	95.34	DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima] >XP_022971616.1 DNA-...	[more]
KAG6596260.1	95.29	DNA-directed RNA polymerase II subunit rpb1, partial [Cucurbita argyrosperma sub...	[more]
XP_022145356.1	93.90	DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145357.1 D...	[more]

BLAST of Cp4.1LG08g13070 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1ELE9	95.40	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143524...	[more]
A0A6J1I682	95.34	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470290 ...	[more]
A0A0A0L655	94.27	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G002510 P...	[more]
A0A6J1CV04	93.90	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110148...	[more]
A0A5D3CJC8	92.22	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Cp4.1LG08g13070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35800.1	0.0e+00	83.45	RNA polymerase II large subunit	[more]
AT5G60040.1	1.5e-166	30.33	nuclear RNA polymerase C1	[more]
AT5G60040.2	4.3e-158	29.85	nuclear RNA polymerase C1	[more]
AT3G57660.1	2.9e-98	23.68	nuclear RNA polymerase A1	[more]
AT4G18670.1	1.6e-08	42.55	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 625..652
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 384..446 e-value: 1.0E-21 score: 79.2
None	No IPR available	GENE3D	6.20.50.80		coord: 795..845 e-value: 6.3E-15 score: 56.4
None	No IPR available	GENE3D	1.10.150.390		coord: 1348..1391 e-value: 2.6E-21 score: 77.3
None	No IPR available	GENE3D	6.10.250.2940		coord: 736..794 e-value: 7.2E-34 score: 117.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1716..1783
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1543..1703
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1469..1530
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1469..1798
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1784..1798
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 443..1490
None	No IPR available	PANTHER	PTHR19376:SF56	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..444 coord: 443..1490
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..444
None	No IPR available	CDD	cd02733	RNAP_II_RPB1_N	coord: 18..802 e-value: 0.0 score: 1301.74
None	No IPR available	CDD	cd02584	RNAP_II_Rpb1_C	coord: 985..1397 e-value: 0.0 score: 781.005
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 6..1400
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 242..479 e-value: 3.8E-103 score: 358.7
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 4..125 e-value: 1.8E-35 score: 123.4 coord: 267..315 e-value: 7.3E-6 score: 27.6
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 645..749 e-value: 8.7E-39 score: 131.8
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PFAM	PF05001	RNA_pol_Rpb1_R	coord: 1635..1648 e-value: 0.43 score: 11.0 coord: 1710..1723 e-value: 0.16 score: 12.4 coord: 1551..1564 e-value: 0.54 score: 10.7 coord: 1593..1606 e-value: 0.0078 score: 16.5 coord: 1510..1523 e-value: 3.7 score: 8.1 coord: 1607..1620 e-value: 0.5 score: 10.8 coord: 1565..1578 e-value: 0.57 score: 10.7 coord: 1621..1634 e-value: 0.48 score: 10.9 coord: 1663..1676 e-value: 0.41 score: 11.1 coord: 1524..1535 e-value: 0.46 score: 10.9 coord: 1482..1495 e-value: 0.41 score: 11.1 coord: 1467..1481 e-value: 0.19 score: 12.2 coord: 1496..1509 e-value: 0.009 score: 16.3 coord: 1677..1690 e-value: 1.3 score: 9.5 coord: 1579..1592 e-value: 0.11 score: 12.9 coord: 1724..1737 e-value: 0.18 score: 12.2 coord: 1537..1550 e-value: 0.29 score: 11.6 coord: 1649..1662 e-value: 0.0026 score: 18.0
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1557..1563
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1669..1675
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1564..1570
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1509..1515
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1709..1715
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1634..1640
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1627..1633
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1648..1654
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1716..1722
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1613..1619
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1662..1668
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1550..1556
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1730..1736
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1543..1549
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1723..1729
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1620..1626
IPR007075	RNA polymerase Rpb1, domain 6	PFAM	PF04992	RNA_pol_Rpb1_6	coord: 822..1006 e-value: 2.9E-64 score: 216.4
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 455..612 e-value: 2.6E-58 score: 198.0
IPR038593	RNA polymerase Rpb1, domain 7 superfamily	GENE3D	3.30.1360.140		coord: 1091..1226 e-value: 7.9E-55 score: 186.5
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 756..1346 e-value: 1.5E-104 score: 349.8
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 617..735 e-value: 3.3E-47 score: 161.5
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 352..447 e-value: 8.5E-24 score: 84.6
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 455..618 e-value: 2.5E-49 score: 167.2
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 14..350 e-value: 8.5E-111 score: 370.2
IPR007073	RNA polymerase Rpb1, domain 7	PFAM	PF04990	RNA_pol_Rpb1_7	coord: 1091..1225 e-value: 1.9E-53 score: 180.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g13070.1	Cp4.1LG08g13070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity