Cp4.1LG08g12990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g12990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	High mobility group protein
Location	Cp4.1LG08: 9296829 .. 9303006 (+)
RNA-Seq Expression	Cp4.1LG08g12990
Synteny	Cp4.1LG08g12990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTGAGTTCATTGTTAACTTTAGCCTTTTTTTTTATTTTTTTTTTATTTTTATTTTTATAATCTGTTTTTTGTTTTGCTTGTGTGTTTTGGAGCAGGCGGTTTGCTTTTATGTTTCCGTAATTTTAATCTTTGGTTCTGCTTTCGGTTGATTTATATGTGTTTTGTTAATAAAATTTTGTTAGGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGTATTTCTCTCTCTCTAGTTTACTGATTTTGTATATATATTTTGAGATCCGTGTTTTTAACGTCTAGTAGAGGTCACTTTTTTGCCGAATTTTTACTAGTTCGATTTTGTTGTTCATAAAAATAAAGGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGTAAGTGATTTTAGATCTGCGTCCTTTTTTATTTCATTTCTTTTAGGGAATTCATAGATTTTGAAACGCGTTCTCGTTTGGGCAAATGAACAGGTTGGGAAGGCTGGCGGTGATAAATGGAGGTCATTGTCAGACGCCGTAAGTTATTGGAAATCGATATTGTTACTCCNGTGGTGGTATCAGGTATGTTATTCTCAAGGGATAAAAGAAACGCATAATGATCTAAGAGTTATTTGCAGGTAATTGAGAAGTGATTATTGTTCTACCTTCACGTAATCATTTACCGTACCTCCAGCCCTCCAAGATAAAAATCTTCCTGCAGAAGGGAGAGTATCAAGAAGTAATAGTTAAAATTTAAAATGAAATGACATTTCTCTAAAATAATTGTTCTTCAGAAATCCTGCTGGCGGTGAGAGTGATTACCAAATGGCTGTACAAGGTGATGGGGCACAGTGGCAACAGAAGCCCTCCAAAACCAGCAAACCAGAACAATATATATCAAAACCTACACGACCACAAGATATTTACTTAAGAAAACATCCAACATATGAACACACTTCTTAGAAAATTCAGTAATAATATAATAACCTTTGATATCAGCAGTACTCGACTATATAAACCATATGACGACTTGATCTCCTTGCTACGAGATTCTTGATCTGTGGAAGCAATGTCATTCAAATAGAATCTAAGGTGTAATCTGAAGCATCTTATTAAGTAATACTCAAGGGATGGGAAGCAATTAATGGGAGAAAACGACCGAAATAAAATGAACATAAGTCAAGGCTACGGTATATTGATAAGTATGGCTATTTTACTGTTCTTTTATAACAATTTGTCTTCAAGATGCATTTTGAGTGATATTGGATTTTAGACAAAAGAAAAATACAAGTTCACGAAACATTACTCTCGCTAGTTGGAAAACTTGAAACAAATTATTGAAAACAGATAACCTTGGTAAATCCCATATATTATCAGTGCTTCACAAGTAACTGTAAAATGGTATCTAATAAGGGCCAAAAAAGGGAATTAATGTAACCAAAGAAATAGATACATAAACACACAACGAGACATAAACATGAAAACATGGCAGTCAAAAACTACAACTACATACAATATTTCAGGAACAATTTTGGGCGATGTTAGATTCGAGGGATTAAAAGCATGTCATAACATACTGACATGAGTTAATCTACGTCAAACTCAAAGCCTGTATTAGTTGGATGTCAACACTTCAATCACGAAGTGCTTTTAATACTTAAAAATAGACCACATCAAATTCTCCAATTCGCTTGGGCTGATGCCTACATTCAACATGATTCCCAGAATAAGACCAATTTTACCAATGAGAAGTTTGCTTTCAACTTGCTATGACATACATAAAATTTCTTCGGTTCCCGCCCATGCAGAAGAATACTACAGATCAGAGGTCATTCAAGGGACTCCACCCAATACAAAGGACCATAATCCATAATATGAAATCGTGACTGGCAGCATGAGCACCGTCTTGGATGAATTTGCATCCATAGATACCCAGTTCAATTGGAAGCAGTGGTAATCACCTTTACCAGCATACACAGCCGCGTTATTATTAGTTTAGAGCCTATAAACCATGGTTTCTTAAATTTGAGAACCATTCTTTTCAATGGTCAATAGCTAAATGGTTGCTTAAGCTTCAAATCCTGAGAATACTATATCACATAGCAGTCAATACTTCAAGCAATATCTTCAATAACTGCTTATCGATGATTCATATAGCAAACCTTACCATACTACAATAGCAAAATTGTTTACCTACCGGTTATGGATAAGAAGTTTTATAAAGCATTTCATAATATTCTTTTAACAACGCACCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCAGCTTGTGCAAATGTAGATGGTCTACACGAACGAAAAAGCAAGTGAACATGATCCCCAAGATAGTCATAAGAATTATAACCAATCGTACAGGATAAGTGATTTGAACCGAATTATGCACTTTTAACCTTGAACCGAGGTAGAGAAATTACGTACTGAGATAAGGTGCTTGCCTCCCTCAGAAGTTGCTTTATTGATTTGCGCAACTCCATTTCCACCTGATTGTTGGAACCTCGCTGAACATTACATGCATGATTGAAACACGATTGTGTCAAAACAAGCACGTTGACAAGATTGGACGGACAACAACTATAACAATGCAAATTCTTAGATATTAAGAATGAAAACATCAATAGATCTCCAGATTGAATCCATCACGTCGTTAAACTAATCATCAAATCGCCACGTCTCCAATCCAATGTTGTGAACTTAATGAAGCTCAGTTGGCTATATTGCATTCTGAAGTTTGTCAACGAAAAACTGAAACGCACTACAGTCCGAAATTTGAGGTACAACTCAAAATTAAACTATTAATGACAAGTTTAAGGTTGAAACGTAAGAAGAAGAACAGATTACACAAACATGAAAAAGATTCGGACGGAAAAAAGAAAATCAAGGAAAAGACGAACCTTCTTTAGGTGATCCAGCCATCCGGCGAGAAACTGAAAAGCAATGACGATCAAAAAAATGGACGGAGCCACAATCGAGTTTCGATGCTCTACGATTTCTTCCGCTTCCATTTCCGAAGGATCTCTTTGGCGCCACCGTAAATTAACGAATCCAAAAATCTTGCGACGACGAAGGTTATTCAGAAAGAAGTTGGGCCAGGCATTGGGCTCCGTAATAAAGAAATGGGCTTCAAATCCAAGGCCCAGCCCAAGTTGTTGAGATACAAAACGCAGCGTTTTAATGGAAGAAATAAAATATCTTAACAAGAACTGAAGTTACAAAAATACCCTCAACTAGTGAGATCAATGATGACCTCAAGACGCGTTAATCGTTTTATCACGTTTATTCTGATAAGTTGTAAACTAGGGGAGGGACGATATGGAACGAGGGAGGGGCAAATCGGTCATTTCATAGCAAAACAACGGGCTTTAACTCACGTGCCGGATCTGCTTAGATGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAGAGGAAACACAAAAGAGCGGAAAGCTAAAGGGAAGAGGCAAAGAGGAGCCAATGAGAAACGAGGACGCGGATCGATGACGTGGCAAAAGATTTTTGAAATCCCGCCTAAACCCAGACTTCAATTGATCTCGCGATTTCTCTCTTTTCTCTCTCTAGCGAAACCGACTCCCCCCCTTCATATCCCTCTCGCTCTTGCTCTTCAAAGCCTTTCCACATAACAGTGAAGCCAAATCCCTAACGCCAAACACGAACCAAGCAAACCTACATCTCCTTATCTTCCTCCCAAACCCTAGAGTTTTACAGGTAAACTCCTAATTTCTCCGCCGCTTGCAAGCTTCTTCTTCGTCCGTCTCTCCTCCGGTTTTTTAACCTATTTTTCGCTTGTTTTTCTGCAGGATTCGTCATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTGAGTTCATTGTTAACTTTAGCCTTTTTTTTTATTTTTTTTTTATTTTTATTTTTATAATCTGTTTTTTGTTTTGCTTGTGTGTTTTGGAGCAGGCGGTTTGCTTTTATGTTTCCGTAATTTTAATCTTTGGTTCTGCTTTCGGTTGATTTATATGTGTTTTGTTAATAAAATTTTGTTAGGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGTATTTCTCTCTCTCTAGTTTACTGATTTTGTATATATATTTTGAGATCCGTGTTTTTAACGTCTAGTAGAGGTCACTTTTTTGCCGAATTTTTACTAGTTCGATTTTGTTGTTCATAAAAATAAAGGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGTAAGTGATTTTAGATCTGCGTCCTTTTTTATTTCATTTCTTTTAGGGAATTCATAGATTTTGAAACGCGTTCTCGTTTGGGCAAATGAACAGGTTGGGAAGGCTGGCGGTGATAAATGGAGGTCATTGTCAGACGCCGTAAGTTATTGGAAATCGATATTGTTACTCCCTTTGTTCTGTGATAATTGCATCAAATTACATGTTCCTGATGCGTTCCCGTTTGATTTTTTCAGGAGAAAGCGCCTTACGTAAGCAAGGCGGAGAAGAAAAAGACTGAGTACAACAAGACGATGCAGGCCTATAACAAGAAACTTGTAAACTCTCTTACCCCAACTTTTTGTCCAGAGTACTTGCTTTCTCTTGTTTATCTTAATCATCCGCTACAATTAATCCTTTAGGCGGAGGGTAGCAATGGAGCTGAAGAAGAGGAATCAGACAAATCCAAATCAGAAGTCAATGACAACGAAGAAGATGACGATGAGAGTGGAGAGGTTTGTAAACAAGCGATGTTTGAAGTATGCAATTCCAATAGTCGTACATGTCTCATAATCCTTTGTTTTGACATCTGCAGGAGGATGATGATGAGTAACTGTGTAACTGTATGGGATGAGGAATGTGGTTGAAGGATAAGCGATTTAACTTCTCATAGCTTGGAGCATAAAGACTCTGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTTATTTTTCTCTTTTTTTGGGTAGTTAGCATAGATGGGAGAAAAAAAAATCAAAACAAAGAATGCTCTGTTCAATGTTAGATTCCTTAAGTTGACATGGTTCTGTATTTGAAAGGAAAATCTGTTAGTAATTCACAACCATTCAGTTTTAGTTCATTAGTCCACTGATCTTGTTTTTTTTTTTCTTTTCTGGTTCTGCCATTTCTTATTTTGAAGATTCCATCTTCCCGTTGACCCATCTTGTGATTCACCATGAAAGTGCGTGAGTTCATGTCTTGAGCTTATATGCTTTGTTGGGTCGGTTGTCTTTTTGATTTGAAAGTTTGTTAGATTCTCCCTTGGTATTTGAGGATGAAATGATGGTGTTTGTTGACTTCACCCTTAGTTTTTAACGTTGAAAGCTTACTTTTGACCATTCGTTTCCTCTTTTGGTTTCTCACCTGAGTTTGAAAATGGCTCAAATTGTGAGGTCTTCGTTATAGTTTGTTTGTGGTTTCTGGAGAGAAGTCAATTAGTGGATGTGTTCTGAGTCGTTGATTTGTGAACAAATTTTGAGGTTCGAATTCTTTGTTATGGTAAACAAATTTGTGTTCGTTGTGTTCTTTGTTATGATGAATAGGTTTGGTTAAATTGGTTAAGATGAGAGATGGAATTAGGTTGGAGAATGGGTGTAGTGATGTGTTGTTGTTAGTCAATTTAAGTTTTGATTACTTGAAGACAGACTACGAACTTATTATAGGTATAGAGCCACCAAACGTGATGCTCTTCTGTTGCTATGCATTCAAGAGTCGGATTCTTTGCACAAATCACCATTAATAGGCAGTTGGTGGGTGATTTAATGAATAACAATGTGTAAGATGAATGTTAAAGCTATCCCACCAAGTTAGTTCAGAATTGATTTGTTGCATTACGTTTGTTGAATTTGTACATTCCTAGATATTATATGTTTGTCAATATACGTTCTTTTAACACG

mRNA sequence

ATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATAAATCCTGCTGGCGGTGAGAGTGATTACCAAATGGCTGTACAAGGATTCGTCATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGAGAAAGCGCCTTACGTAAGCAAGGCGGAGAAGAAAAAGACTGAGTACAACAAGACGATGCAGGCCTATAACAAGAAACTTGCGGAGGGTAGCAATGGAGCTGAAGAAGAGGAATCAGACAAATCCAAATCAGAAGTCAATGACAACGAAGAAGATGACGATGAGAGTGGAGAGGAGGATGATGATGAGTAACTGTGTAACTGTATGGGATGAGGAATGTGGTTGAAGGATAAGCGATTTAACTTCTCATAGCTTGGAGCATAAAGACTCTGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTTATTTTTCTCTTTTTTTGGGTAGTTAGCATAGATGGGAGAAAAAAAAATCAAAACAAAGAATGCTCTGTTCAATGTTAGATTCCTTAAGTTGACATGGTTCTGTATTTGAAAGGAAAATCTGTTAGTAATTCACAACCATTCAGTTTTAGTTCATTAGTCCACTGATCTTGTTTTTTTTTTTCTTTTCTGGTTCTGCCATTTCTTATTTTGAAGATTCCATCTTCCCGTTGACCCATCTTGTGATTCACCATGAAAGTGCGTGAGTTCATGTCTTGAGCTTATATGCTTTGTTGGGTCGGTTGTCTTTTTGATTTGAAAGTTTGTTAGATTCTCCCTTGGTATTTGAGGATGAAATGATGGTGTTTGTTGACTTCACCCTTAGTTTTTAACGTTGAAAGCTTACTTTTGACCATTCGTTTCCTCTTTTGGTTTCTCACCTGAGTTTGAAAATGGCTCAAATTGTGAGGTCTTCGTTATAGTTTGTTTGTGGTTTCTGGAGAGAAGTCAATTAGTGGATGTGTTCTGAGTCGTTGATTTGTGAACAAATTTTGAGGTTCGAATTCTTTGTTATGGTAAACAAATTTGTGTTCGTTGTGTTCTTTGTTATGATGAATAGGTTTGGTTAAATTGGTTAAGATGAGAGATGGAATTAGGTTGGAGAATGGGTGTAGTGATGTGTTGTTGTTAGTCAATTTAAGTTTTGATTACTTGAAGACAGACTACGAACTTATTATAGGTATAGAGCCACCAAACGTGATGCTCTTCTGTTGCTATGCATTCAAGAGTCGGATTCTTTGCACAAATCACCATTAATAGGCAGTTGGTGGGTGATTTAATGAATAACAATGTGTAAGATGAATGTTAAAGCTATCCCACCAAGTTAGTTCAGAATTGATTTGTTGCATTACGTTTGTTGAATTTGTACATTCCTAGATATTATATGTTTGTCAATATACGTTCTTTTAACACG

Coding sequence (CDS)

ATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATAAATCCTGCTGGCGGTGAGAGTGATTACCAAATGGCTGTACAAGGATTCGTCATGAAGGGCGGTAAATCCAAGGCGGCTCCTAAAAAGGCCGATTCTAAGTTGAAGACCAAAAGTGCTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCTAGTGCTTTTTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTACAAAAAGGAGCATCCTAACAACAAATCTGTGGCCGCTGAGAAAGCGCCTTACGTAAGCAAGGCGGAGAAGAAAAAGACTGAGTACAACAAGACGATGCAGGCCTATAACAAGAAACTTGCGGAGGGTAGCAATGGAGCTGAAGAAGAGGAATCAGACAAATCCAAATCAGAAGTCAATGACAACGAAGAAGATGACGATGAGAGTGGAGAGGAGGATGATGATGAGTAA

Protein sequence

MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFINPAGGESDYQMAVQGFVMKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEEESDKSKSEVNDNEEDDDESGEEDDDE

Homology

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-29
Identity = 88/152 (57.89%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 126
           MKGGKSK   K+AD KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 127 QYKKEHPNNKSVA---------------AEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGS 186
            + KEHP NK+V+               AEKAPYV+K+EK+K EY K M+AYNKK AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 187 NGAEEEESDKSKSEVNDNEEDDDESGEEDDDE 198
            G +EEES+KS SEVND ++D++ SGEE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.6e-29
Identity = 91/147 (61.90%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGA-SKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 126
           MKGGKSKA   K+D+KL  K   A +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 127 HPNNKSV---------------AAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEE 186
           HPNNKSV               AAEKAP++SKAEK+K EY K +QAYNKK A G+  AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEE 120

Query: 187 EESDKSKSEVNDNEEDDDESGEEDDDE 198
           EESDKS+SEVND++ED D SGE+D ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-25
Identity = 89/152 (58.55%), Postives = 104/152 (68.42%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGAS-----KKSAKA--AKDPNKPKRPASAFFVFMEEFR 126
           MKGGKSK   KKA++KL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 127 KQYKKEHPNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEG 186
           +QYKK+HPNNKSVAA               EKAPYV +A KKK EY  T+QAYNKKL EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 187 SNGAEEEESDKSKSEVNDNEEDDDESGEEDDD 197
            +  +EE SDKSKSEVND +ED+++  +EDDD
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-23
Identity = 82/146 (56.16%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVAA               EKAPYV+KA+K+K EY K M+AYNKKL EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 198
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.7e-23
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 127 PNNKSVA---------------AEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVA               +EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 198
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Cp4.1LG08g12990 vs. NCBI nr
Match: KAG6596275.1 (hypothetical protein SDJN03_09455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (556), Expect = 7.51e-69
Identity = 134/149 (89.93%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 64  GFVMKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYK 123
           GFVMKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYK
Sbjct: 48  GFVMKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYK 107

Query: 124 KEHPNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA 183
           KEHPNNKSVAA               EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA
Sbjct: 108 KEHPNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA 167

Query: 184 EEEESDKSKSEVNDNEEDDDESGEEDDDE 197
           EEEESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 168 EEEESDKSKSEVNDNEEDDDESGEEDDDE 196

[Close]

BLAST of Cp4.1LG08g12990 vs. NCBI nr
Match: XP_022947889.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7027826.1 hypothetical protein SDJN02_09003 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212 bits (540), Expect = 3.93e-67
Identity = 131/146 (89.73%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           PNNKSVAA               EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 197
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Cp4.1LG08g12990 vs. NCBI nr
Match: XP_022971560.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 211 bits (537), Expect = 1.12e-66
Identity = 130/146 (89.04%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           PNNKSVAA               EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA+EE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGADEE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 197
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Cp4.1LG08g12990 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 2.51e-63
Identity = 123/156 (78.85%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 57  DYQMAVQGFVMKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFME 116
           D+  +  GFVMKGGKSKAAPKK D+KLK+K AGASKKSAKAAKDPNKPKRPASAFFVFME
Sbjct: 2   DFSRSFTGFVMKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFME 61

Query: 117 EFRKQYKKEHPNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKL 176
           EFRKQYKKEHPNNKSVAA               EKAPYVSKAEK+K EY KTMQAYNK++
Sbjct: 62  EFRKQYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRI 121

Query: 177 AEGSNGAEEEESDKSKSEVNDNEEDDDESGEEDDDE 197
           AEG NGAEEEESDKSKSEVND +EDDDESGEEDDDE
Sbjct: 122 AEGGNGAEEEESDKSKSEVNDEDEDDDESGEEDDDE 157

[Close]

BLAST of Cp4.1LG08g12990 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 197 bits (501), Expect = 3.33e-61
Identity = 119/146 (81.51%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSKAAPKK D+KLK+KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           PNNKSVAA               EKAPY++KAEK+KTEYNK+MQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 197
           ESDKSKSEVND++EDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 146

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy TrEMBL
Match: A0A6J1G881 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451359 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.90e-67
Identity = 131/146 (89.73%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           PNNKSVAA               EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 197
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy TrEMBL
Match: A0A6J1I630 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470239 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 5.44e-67
Identity = 130/146 (89.04%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           PNNKSVAA               EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGA+EE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGADEE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 197
           ESDKSKSEVNDNEEDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy TrEMBL
Match: A0A0A0L1J4 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002290 PE=3 SV=1)

HSP 1 Score: 203 bits (516), Expect = 5.19e-64
Identity = 116/131 (88.55%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSK APKK D+KLK+KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEEESDKSKSEVNDNEED 186
           PNNKSVAAEKAPY++KAEK+KTEYNK+MQAYNK++AEG NGAEEEESDKSKSEVND++ED
Sbjct: 61  PNNKSVAAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 120

Query: 187 DDESGEEDDDE 197
           DDESGE++DDE
Sbjct: 121 DDESGEDEDDE 131

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy TrEMBL
Match: A0A6J1CVX4 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1)

HSP 1 Score: 199 bits (505), Expect = 7.29e-61
Identity = 120/157 (76.43%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 56  SDYQMAVQGFVMKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFM 115
           S   +   GFVMKGGKSKAAPKK D+KLK+KS GASKKSAKAAKDPNKPKRPASAFFVFM
Sbjct: 81  SSQTLEFAGFVMKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFM 140

Query: 116 EEFRKQYKKEHPNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKK 175
           EEFRKQYKKEHPNNKSVAA               EKAPY++KAEK+KTEYNK+MQAYNK+
Sbjct: 141 EEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKR 200

Query: 176 LAEGSNGAEEEESDKSKSEVNDNEEDDDESGEEDDDE 197
           LAEG NGAEEEESDKSKSEVND++++DDESGEE+DDE
Sbjct: 201 LAEGENGAEEEESDKSKSEVNDDDDEDDESGEEEDDE 237

[Close]

BLAST of Cp4.1LG08g12990 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 194 bits (493), Expect = 2.65e-60
Identity = 119/146 (81.51%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKGGKSKAAPKK D+KLK+K AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           PNNKSVAA               EKAPYVSKAEK+K EY KTMQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 197
           ESDKSKSEVND +EDDDESGEEDDDE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGEEDDDE 146

[Close]

BLAST of Cp4.1LG08g12990 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-25
Identity = 80/145 (55.17%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 127 PNNKSVA---------------AEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVA               +EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDD 197
           ESDKS SEVND ++ +D S EEDDD
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of Cp4.1LG08g12990 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-24
Identity = 82/146 (56.16%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVAA               EKAPYV+KA+K+K EY K M+AYNKKL EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 198
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Cp4.1LG08g12990 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-24
Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 127 PNNKSVA---------------AEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVA               +EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 198
           ESDKS SEVND  EDD E G E+DD+
Sbjct: 121 ESDKSVSEVND--EDDAEDGSEEDDD 142

[Close]

BLAST of Cp4.1LG08g12990 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-24
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 127 PNNKSVA---------------AEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVA               +EKAPYV+KAEK+K EY K ++AYNKKL EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEEDDDE 198
           ESDKS SEVND ++ +D S EE+DD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Cp4.1LG08g12990 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-24
Identity = 82/143 (57.34%), Postives = 94/143 (65.73%), Query Frame = 0


Query: 67  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 126
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 127 PNNKSVAA---------------EKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 186
           P NKSVAA               EKAPYV+KA+K+K EY K M+AYNKKL EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 187 ESDKSKSEVNDNEEDDDESGEED 195
           ESDKS SEVND  EDD E G E+
Sbjct: 121 ESDKSVSEVND--EDDAEDGSEE 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	1.5e-29	57.89	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P40619	2.6e-29	61.90	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P40620	1.7e-25	58.55	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P93047	2.8e-23	56.16	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	4.7e-23	54.11	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of Cp4.1LG08g12990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596275.1	7.51e-69	89.93	hypothetical protein SDJN03_09455, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022947889.1	3.93e-67	89.73	HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cu...	[more]
XP_022971560.1	1.12e-66	89.04	HMG1/2-like protein [Cucurbita maxima]	[more]
KAG6577813.1	2.51e-63	78.85	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038904814.1	3.33e-61	81.51	HMG1/2-like protein [Benincasa hispida]	[more]

BLAST of Cp4.1LG08g12990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G881	1.90e-67	89.73	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451359 PE=3 SV=1	[more]
A0A6J1I630	5.44e-67	89.04	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470239 PE=3 SV=1	[more]
A0A0A0L1J4	5.19e-64	88.55	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002290 PE=...	[more]
A0A6J1CVX4	7.29e-61	76.43	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1	[more]
A0A6J1KZ83	2.65e-60	81.51	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g12990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20693.3	8.9e-25	55.17	high mobility group B2	[more]
AT1G20696.1	2.0e-24	56.16	high mobility group B3	[more]
AT1G20693.2	2.0e-24	55.48	high mobility group B2	[more]
AT1G20693.1	3.4e-24	54.11	high mobility group B2	[more]
AT1G20696.3	4.4e-24	57.34	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..50
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 67..195
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 104..155 e-value: 8.06959E-8 score: 45.6966
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 103..159 e-value: 1.7E-10 score: 50.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 104..130 e-value: 3.7E-7 score: 30.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 104..158 score: 12.401923
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 87..176 e-value: 2.1E-10 score: 42.8
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 21..63 e-value: 6.3E-5 score: 25.0
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 96..162
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 24..50
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 67..195
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g12990.1	Cp4.1LG08g12990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin