Cp4.1LG08g12530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g12530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Sel1-like protein
Location	Cp4.1LG08: 9015265 .. 9017952 (+)
RNA-Seq Expression	Cp4.1LG08g12530
Synteny	Cp4.1LG08g12530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTTTCAAAACCTTCCAGACGCTAGACCCTTTTCCTGGGTTTTTCCTTTTCCTTTTCCATTTTTTTAACGAGCCAGAGGAAAACAGTTTCCGTACCGGCAAGAAGGAAGGTAAAGAAAAACCGATTCCGTTATCAAATTTTTACATTAATCCCTTCAAGACAACTTAATTTTTCTTAATCTCTTCTTCGTTTTTCATGAAATCGATTTCGGTTCAATGATTTTTCACAAAGCAGCGTTTTCGGTGCCTCAGAATCTCGCCAAATCACAAAGTCAAGGTTTCGTTTGATTAATCGAAGCCGATCGTGTTGAAATAGAATGGAGATTAGCGGAGGAACAGAAGCCTCGAATCGTGTTCCGTTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGGGGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGTGACTTTCTTTCCTATCAATTAACGAAGATCCTTATTGCTTAATTCCTCCAGTTTTGACGAAATCAAGAACTTAAGTTCATTGAAATTCCTGTGGTTATTATACTGATATATGTGGGAATTATTGGTCAACCATATGCTTCGTAAATATTGCAAATTCTGTTTCGTTTTGGCCAAAAATAGTTATCGGTTTTCTCAGGTTGCTTGGTTCTCTGTAATTTCTGGATTTGTTGCAACTTTGAGGAGATTGGAACATCTCTTAATGTCTTTCTGACACATTTTTGAAAATTATGCTTGTTTGTTAGCAATTCTTTGGTAAGGTTTTCACGTTCTATGAAAATACATTTGAACTTAAATTTCCAAAACAAAATAAAAGTTTTTAAAAACTACTTACTTTGTTCCCGAAGTTCTGCTTGAATTTTGAACATGTTCTTAAAAAAGTAGTTAAAAACAAGGAACTATAGATTAGGTGGGAAATAATGTTTACAAGGTTAATTTTCAAAAGCAGAAATCCAAAACTAAATGGTTATAAAAAAGGAACTAATTATTTGATTTTTTTTGTTTTTTTTTTTGGATGAAATCCTATTGGCTTAGTGGAATTTTATGGTTTCAAATGCCTTTGATTGCAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGGTCATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTGATTGGCATTTTTTTAAAGAATATAAATCTCTTTTTTTGTTTTAATGTCTTTTCCTAACCTTATCCATTATCTATAATTATCTCTTGCTAATTTCTTAAGCTAACTTCGATTGTGATAGGTTATAATGCTAGCGATTCGGACTCAGATGACTTGACTCACGATTCTTAACTAGATCAGTGCTGTATGTCATGTCGAAACAACCACTGGTATCTTTAGCACAACCCGTCTTTCGATATTTAACTTCTTGTTCTATGGCTCTTATGTGTGACATCAATTATTCTCTGTTGCACATGTGAAAATGTTCTAGTGACAGGGAGAAATTCGGTAAAAGATGACGTTTTTGCTTACTGCTTAAGGATTGATCTTTTATTTTTTTGATGATATGATATACCTTATTGTTGAGTTCTTAAAACTTCAGCTATAAGTTGAGGGTGGGGGGCGTGTCTATTGGAAAACAACTCCCTCCACTCGATCCTACCACATTGTAGCTACTTTTATCTAAACCTTGAATACGTAATTAAATTGTAATCTCTAGTTTTTCTCTCCTACATCTAATTATTGCTCTAGATCTAGCTTCCGTGAACAATTTTGGGCGGGGGATTTGTATGATTTTGAATATCAAGTTTGTTGAAGTTAAAATTGTAGTTCATAAGCCAATCTGAGCATAGCTTAATTGATTTGAGTAGATGTCATTGACGAAGAGGTGAGTATATGTCTATCCTCACATATTGAACTAAAAAGTATTAATAGGTCATAAATGTTGGTTACAAAGGGATATTCTGCCTTACATGTTCCATGTCACTTGTTTGTTGTTCATGATGCTTGATATCCCTTGGGCGTTCATGTTCGTCTTATGCAAGTCTTGCTTTCTAAAAGATGACTCTTTCTTGTTCTTGTTTTTGTTTTGTAAAAGGAAATTCTTAAACCCTTGTTTTTCTTGAGATAAGATTCGATTAGCTTAGACTTATACGCTTCAAGTCAAGTTTCCACTCGATGACTATCTAGAATGATCGTTTTATCCTCTAAACATGTTTACGTGTCATCACCAATCAAGCTGATGTTTGTGAGACAAGTTAGCTGTATACTGAATGTGCAATTACAGGTCATGATTTGCTATGGTTGTTTGTGCTGTCCAAACTGACCAAACTGTGCAATTCTTTAAGCTTGTACTCGGCGAAGTGCTTTCCTTGAAAACACTTGATTTTGTAGGATGTGCTTTTCACTTGGGGAACTCTACTTGCTCAGCAACATTCGTAGCTGCGAAGAACAACATTCGTGCACTTGAATTTAAACGGATGTAATATGCTTTGATTTCACCTTTACTCTACAAAGAATTTGTGGTCAAATAGGCTAAATCCTATATCCATTTTTTATTCTGTTTAGGTTGCCTCTGTTCACTGTCTGCTAGACATTTTCAATTGATTTTTGCATAATTATTAAATTCTGAACTCTTTTAGTTGCTAATCAAATTCTCTTTTAAGAAC

mRNA sequence

TCAATTTTCAAAACCTTCCAGACGCTAGACCCTTTTCCTGGGTTTTTCCTTTTCCTTTTCCATTTTTTTAACGAGCCAGAGGAAAACAGTTTCCGTACCGGCAAGAAGGAAGCGTTTTCGGTGCCTCAGAATCTCGCCAAATCACAAAGTCAAGGTTTCGTTTGATTAATCGAAGCCGATCGTGTTGAAATAGAATGGAGATTAGCGGAGGAACAGAAGCCTCGAATCGTGTTCCGTTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGGGGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGGTCATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGCGATTCGGACTCAGATGACTTGACTCACGATTCTTAACTAGATCAGTGCTGTATGTCATGTCGAAACAACCACTGGATGTGCTTTTCACTTGGGGAACTCTACTTGCTCAGCAACATTCGTAGCTGCGAAGAACAACATTCGTGCACTTGAATTTAAACGGATGTAATATGCTTTGATTTCACCTTTACTCTACAAAGAATTTGTGGTCAAATAGGCTAAATCCTATATCCATTTTTTATTCTGTTTAGGTTGCCTCTGTTCACTGTCTGCTAGACATTTTCAATTGATTTTTGCATAATTATTAAATTCTGAACTCTTTTAGTTGCTAATCAAATTCTCTTTTAAGAAC

Coding sequence (CDS)

ATGGAGATTAGCGGAGGAACAGAAGCCTCGAATCGTGTTCCGTTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGGGGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGGTCATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGCGATTCGGACTCAGATGACTTGACTCACGATTCTTAA

Protein sequence

MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

Homology

[Close]

BLAST of Cp4.1LG08g12530 vs. NCBI nr
Match: XP_023538764.1 (uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo] >XP_023538765.1 uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo] >XP_023538766.1 uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204 bits (518), Expect = 4.28e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. NCBI nr
Match: XP_022971526.1 (uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971528.1 uncharacterized protein LOC111470221 [Cucurbita maxima])

HSP 1 Score: 200 bits (509), Expect = 1.01e-64
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEA NRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. NCBI nr
Match: XP_022934166.1 (uncharacterized protein LOC111441393 [Cucurbita moschata] >XP_022934245.1 uncharacterized protein LOC111441393 [Cucurbita moschata] >XP_022934321.1 uncharacterized protein LOC111441393 [Cucurbita moschata] >KAG6596323.1 hypothetical protein SDJN03_09503, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027875.1 hypothetical protein SDJN02_09052 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (507), Expect = 2.04e-64
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           ME SGGTEA NRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. NCBI nr
Match: XP_008442362.1 (PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442364.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_038903442.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903443.1 uncharacterized protein LOC120090028 [Benincasa hispida] >XP_038903444.1 uncharacterized protein LOC120090028 [Benincasa hispida] >KAA0044203.1 Sel1-like protein [Cucumis melo var. makuwa] >TYK24929.1 Sel1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (483), Expect = 9.38e-61
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE  NRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LT DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. NCBI nr
Match: XP_022157335.1 (uncharacterized protein LOC111024062 [Momordica charantia])

HSP 1 Score: 190 bits (482), Expect = 1.33e-60
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE  +RVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLT DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. ExPASy TrEMBL
Match: A0A6J1I270 (uncharacterized protein LOC111470221 OS=Cucurbita maxima OX=3661 GN=LOC111470221 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 4.90e-65
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEA NRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDVTHDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. ExPASy TrEMBL
Match: A0A6J1F1H3 (uncharacterized protein LOC111441393 OS=Cucurbita moschata OX=3662 GN=LOC111441393 PE=4 SV=1)

HSP 1 Score: 199 bits (507), Expect = 9.89e-65
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           ME SGGTEA NRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. ExPASy TrEMBL
Match: A0A1S3B5I4 (uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 4.54e-61
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE  NRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LT DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. ExPASy TrEMBL
Match: A0A5D3DNP0 (Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00440 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 4.54e-61
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE  NRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LT DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. ExPASy TrEMBL
Match: A0A6J1DSS4 (uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024062 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 6.45e-61
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MEISGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTE  +RVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS 100
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLT DS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of Cp4.1LG08g12530 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 144.1 bits (362), Expect = 6.3e-35
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 13  VPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRS 72
           VPLS VVSDC KRWFKDTL EAK G+I MQVL+GQMYYSGYG+P+DA+KGR+W+TKASR 
Sbjct: 55  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114

Query: 73  RSSVWKVSDKHPGYNASDSDSD 95
           RSSVWKV DK PGYNASDSDS+
Sbjct: 115 RSSVWKVIDKRPGYNASDSDSE 136

[Close]

BLAST of Cp4.1LG08g12530 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 143.7 bits (361), Expect = 8.2e-35
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 4   SGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGR 63
           + G++  NRVPL++VV DCV+RWF+DTL EAK GD+ MQVLVGQMY SGYGIP+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYNASDSDSDD 96
            W+ KASR+RSS W+VSDK PGYNASDSDS+D
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGYNASDSDSND 160

[Close]

BLAST of Cp4.1LG08g12530 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-30
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 4   SGGTEASNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGR 63
           + G++  NRVPL++VV DCV+RWF+DTL EAK GD+ MQVLVGQMY SGYGIP+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYN 88
            W+ KASR+RSS W+VSDK PG N
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGNN 152

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12530 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g12530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538764.1	4.28e-66	100.00	uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo] >XP_023538765....	[more]
XP_022971526.1	1.01e-64	98.00	uncharacterized protein LOC111470221 [Cucurbita maxima] >XP_022971527.1 uncharac...	[more]
XP_022934166.1	2.04e-64	98.00	uncharacterized protein LOC111441393 [Cucurbita moschata] >XP_022934245.1 unchar...	[more]
XP_008442362.1	9.38e-61	93.00	PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo] >XP_008442363.1 P...	[more]
XP_022157335.1	1.33e-60	93.00	uncharacterized protein LOC111024062 [Momordica charantia]	[more]

BLAST of Cp4.1LG08g12530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I270	4.90e-65	98.00	uncharacterized protein LOC111470221 OS=Cucurbita maxima OX=3661 GN=LOC111470221...	[more]
A0A6J1F1H3	9.89e-65	98.00	uncharacterized protein LOC111441393 OS=Cucurbita moschata OX=3662 GN=LOC1114413...	[more]
A0A1S3B5I4	4.54e-61	93.00	uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=...	[more]
A0A5D3DNP0	4.54e-61	93.00	Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A6J1DSS4	6.45e-61	93.00	uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Cp4.1LG08g12530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38450.1	6.3e-35	80.49	CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha...	[more]
AT5G05360.1	8.2e-35	70.65	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G05360.2	2.1e-30	67.86	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006597	Sel1-like repeat	SMART	SM00671	sel1	coord: 39..74 e-value: 0.002 score: 27.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 20..83 e-value: 1.3E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	PANTHER	PTHR36792:SF6	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..100
None	No IPR available	PANTHER	PTHR36792	EXPRESSED PROTEIN	coord: 1..100
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 34..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g12530.1	Cp4.1LG08g12530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding