Cp4.1LG08g12500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g12500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Location	Cp4.1LG08: 9072155 .. 9078259 (+)
RNA-Seq Expression	Cp4.1LG08g12500
Synteny	Cp4.1LG08g12500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAACCTCCATTTCTGTTGCTCCTAGTTTCGCTATTCTCGCTGATTCCGACTTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTATCACTCGGTTCGTTTTCCTGTTCTCGTTTATCGCACACAAGTCTTCATGGATGCTTGTTCATATCTTCTCGTTTCCGATCAATTGTTCGTCTCTTTCACAGACGTGTATTTTGTTTATTTCAGTCGAGAACAGTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTATTCATCAATTGAGTTGTATGTGTTGAAATTCTCTTCAACTTTTCCTTTCCATTTTCTGTCATGATTTAAGCAACTGATCCATTACAATCTTTAGGTTTTGGTTCCTATACCGAAGCCGGTCGGCTACACAGGAGCTGATCCGTATAAAATGTAAGAATCTTGTACTCAAGATTGTGCTCTAATTTCTTTTAGTTCACGTCAAGTTCTAGGAGTGCTGAATTATTTTAAACTGGAACGGACGGTTTAATTGTACATTAACTGAATAATAAGTGATTATATATATCTGAATCTGATAGCCTGCATTTGCTAATCAAGAATCTCTCGTTTCGAAGCATTTGTCATGCGTTGAAGTTCTTACAATAATTATGCAAATGGATTTTTCTAGAGTCAGAAGAATATTATAGTCGGTTCAATAAATTTACTCGCTAGCAACCTGCAGAGGATATTCTTGTTCTACTTTTGTCTAGTTTCGATGATTTAGTACCATATCTCATATAGTCTTATCGTTTATGCTGTGTGAAGAAAATTTGTTTCATCTCTTGTACTTAAAACTTAATTCTGAATAAAGGAAAAACAGTATAATAATTGACGTGACATAAAACTATTTGTAGTATGCAACAATCACTACTAGAACTTGAATTTCTCCTCACGTCATCTGTCTAGCTTTGAAAATCAGTAGAAGGTTGCAATGTTTCCTAGTGCCTGCTATCTATCTTCGAGTTTGTATTGTTTGTTTTATAAGTTTTTGATTCTCTGTTGCATCGTACCTACAATGTGGAAATGGAGAAATGAGAGTGTAGGTGACGTCTAGGGATTATGCTTAGAAGTATAACCTTAAGATTTTTTCATGCAATTAATCTCATCATTTTACCTTTATTTTTATTTCTAATTATAACTACGGGAATAGACTGTCATGATACATTATTATTTCATCAACTGGTTTTTCACTACCATGAGTTGGCTTAGTTGTTACAAATGCAATTTACATTTTAGATGTTTGTCGAGGTTATAGTTTTAAATTTGTGTGATGACCGCTATGATACATAGCAAGTTGTCATCAAAATGTGTGACGAATACTAAATTGTTACTATTTCCATAGATTTTTCAATAACAAATAATATTGGACATAAAAACTATATCATGGGATTACTTGAGCACATTTGAAGTTATAGTTGATCTATATTCTTCCGATTATTAATATATTGCGTTTGCTTTTCTATTTGCCACAATGTTCCATCCTGTTTTATGAATTATTACGCTTTTTGAGTTATCTGGTTGCATACATCTTCTTTGAATGTAGATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTGGTATGGTATTTATTGTAGATAGATTAGATATCTGTTTATTTTCACAGTTCATAAGGTGACAATCTAGTCTTTCACGGTTGAAATGAGTTTCTGAGTACTTACATCTGACAACCATTGTCAATTTATTTGTGCTGCAGAGGTACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAATGGATATGCCTCATATCTGTATGTCCCGACTCTGTTAATGCTTTCCACACTCCTTCCTTAACGCATACATAGGAATATTGTTCTTTTTGCTAGGAAATATTTATATTCCCCAGTCTGATGATAGCAAACTCTATAAAAATCAATTGCACTTTATTGGCATATCTAAAACTGATATTGGAGAAGTGTATTTATAACCAAGTGAAGAGTACGATTGACTACTCCGTACATATAAGTTGGAGACCTAACTTTTTTAGAATGCCTATTGGCACTCTAGTGCAGCACCAAGTGAAATATCGCCATCTTACGTAAGTCTGTACTTATATATAATATATGGCTCCTTTTGCTGAAATCACATTAACATCTGATCTAATAGAATCTGGGTTAATTGCTGAAACTTTTGCTTTTAGCATGTTCGCTGACGAGCTACCTACACAAGAGACAGTCTCACTATTTTTAAAGAAACTTATATGACATAATCAAAAGTAGTTTGGTAGACCCCGTGTTATAGGAATGGGAGATAAGAGAGAGTGAAATTTTGCGTGAAGAATTGTGGGATTATGTCGGATCGTTTGTCTTTGTGGTGTTCTGTTCTGCCCGATTTTTGTAATTATGATCCAAGTCAAATTTATGCCAATTGGGATCCTTTTTGCAACTCCCATTGCTCTTGGGGATTTCTCATCTCCTCCTTTTGCACATATTTTCTTCGATTAATGATTATGTCTAACCCAAAAGGTACTTCTTTACATATAAATGATTTACCCTCACTGAATACTACTCTTAGCTCACAACTTTCCCGCCCTTCAATTAGTTGCACCACTTGGTCACAAATGAGGGCATCATTCAATTTACCTGTACTACTACAACTATCCACAGGGCAATTCCCATTACTCTTCTTCTGATATACATGAATGTCCGAGTCCCTATCATAGTTCTCCATATCAAATGTCTATCATAGCTCTCCAGTATAATTGTCTGATCTTCAATTTGTACAAAAGAAATCATTTCCAGTACATATCTAACAGCTGTTTCCTGCCATTATTCGTATCTCTTTAGTCTCGATGTAATGGGTGTATCCACTGGCTTTATGCTATAAATTGTTTCCAATGCATTTATATCATTGTTGGTCATTGCTTTTATCTGTTGATTGACGCCATGATAAGTCTTGCAGTATACATTAAGATCAGATAACACGGTCAGTCTCGAGTGGCCGTTGTCTAATACCTGATAGGAGGACAAAAATATTATGAGTAGTGGGTTTCTGTGAATTTTTTAGAACCTGTTGAGAGTTCATATCATATTTGCTTAACTTGTTAAATTCTTAACCGATCCATCTATCTGTATTGCACCTTGTCTGAGTGAAGTTCTTCTTAGCTTTCTGACTACTTTCTTCTCAATAGATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCATTGGCCAAAGCATATCCTTGTCCGTTATACATGGTAAGTCATCTGTATCTTATTTGATTGAAGCTTATTTTACAATTCTTCTACTTATGATAAACCAGTTTCTTATTCTTATTTTTATGATAAACCAGTTTCTTAATTCTTATTTTTATGATAAACCAGTTTCTCATGCTTATTTTGAAATTCTTTTCCTTACCACTGGTGTGGTAGTTTTTTTTTTTTAAGAGACAATTTCATTGATGATTGAATTTACAAAAGGGATGTATAATCCATGGTATTTACAAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAACTATAGGTAGTAAAAGCTATTCGACAATGTTGTTTATGGTGTAAACTGTCTAATATTTTGTGTAGGACTGTCTTTTCTGCAAATGTTCTCTGATTTCTTTCTTACCACCAATAGTCAAGCGTATACTTAGCATATTTCAAAATCCAAACATGGTGGACCAATTTCTTAGTAAGATCACTATTTGAACAGCAATATTAATGATGATGACATTGTAGTTTATGATTGATAGATAACACAACACAACGTAGTTTCGTCCATAGGATTTGATTTATGAGAGGACTCAACTGGGAATCGAACAGTCGATTGTGAAAGGATTACAAAACAGTGGACAGAAAGTATATATAATACAAAATGCATATGATTGGGATTATTAAGCTTGTTAACACTATGTTCTTGGCGTGTTCCAGGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTAAAAACACTTATTCTTTTATGATAACTGCTGCCGCGCTATTTCCTTTTCGAGCTAGGGATTTCTTCTGATGACCACTTTAGTTCCTCTGCATCTTAATAATTCACATGCATAATCCATACAACATATATAACCTCATTACTCACGTGGTTTTAAAATTTCAGCTTCATTTCTTTTTTCTTTTTCAAAAATAAAAACTAAATATGTCCAATATTTTTTGTTTTCGTTTTTCTTAAAGCAGAAACCAATAATTCTTTTATCACATATACTTTTTGGGTTTAAAGGCAGTTTTGGTCCTAAATTTTCTTCGAAGAAACAATTGTCTCTAAACTTTATTTTGTAATGATTTAGTCTTTGCACTGCCAAATTTATAACAATTTAGTCTCTAAATCTTAGTATGTAGCAATTGGTCTCTGATTTAAATTGTGTAATGAAAAATATTGCTAAAAATTAACTTTTAATTTTAATGATGGTAGGGGACTTATTTTACAAATGTGAAGGTAATTTGTTAAAGTTCACATTAAATTGTTACAAATTTGCAAAGTGCATAGACTAAATGGTTGTTTTTTCTAAGTTTAGAGACAAAAAAATATTCTTAACCTTGATTTTTTTTACCGGTTGTCATACTCTAATTTTATTTTGCATTCTAAAAATTGAATATAATTTTTAAATATTTTATTAGCTAGAGTGAGGGAGTTATAGATTATTAAGAAAGGTAGGAGTTACTTCTGAGTAGAACTTTTTGAATGTCAATAGAAGGAAACTGGGATTTTGAAAAAACAAAAGCCTCAAGACTTTGTTTGAAAACGTTTTTTTTTTTTTTTCCTTTTCGTTTCTATTTTTTTTAAAAAAACAGAACCAAGCATATTCCATTCCTAACTTTAGGAATACAAAGACAATATGTTAGGTAATGTTTTCTTTATTCTGGAAGTTTTAAATTTTTAGAAAAAACCAAAGTTCTTAGGAACAAAATTTTGTTTCTCAACAAGCTACCCTTAGAAGCCCACCTTTTAAAAGCAGATTTGTTTTCTAGTTAAATAAGTGATACATATCTTTCTATTGCTGATTGTAAATATATATACATTGTTTGTGTTTTTTAAATAGAAAATCATTAACTAAAAAAAAAATAACGCAATGGAACCAAACTTTTCTAATAATGATGTTTAACCTACTCTATTATGGTAATGAAATATAATTTCTAGATTTTTTTTTTTTTCGTATAATGTTCAAACATTATCATTAAATTTATTTAAATGTTTGAAAGAAAAGTTTAGAGGTAGGAGTTTGAGCAAAGTAGGACAGAGAGATCGAAGGGAAGAGAAAATTTAGAAATTGATATATTATAGAGAAAAGGAAAGAAGTACAAGTTAGAAAAAGATTAGTTTTGAAGGGTGTTCTGACATATGTTGTGCAACAGGTCTGTTGCTGACTTTTATTCTGTCAATTTACATATTGCAATCATCGAAGGAGAAGTTAGCAAGGTACGAATAAATTTTGGGATATGATAATAGGAATAAAGATTATTGGGGTTTAACTGGTTCCCTTTTTTGTTGATATTATTCCAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAGACTCACTCTACAACTCTACAACTCTACAACTCAATCCGTCTTACTCCTTAGGGTTAGGCTCCATTACGTCCATTCAAGGAAGTTCAATTACAATCACTCTATCAGATTTCACATTTCTTTTGAACACAAAAATGTAACTCTTTATCTGTATGGTAAGGTGTATATGCAACTCGGAAGACAATTACAGACAATTACAGACCCTTGTTTTCATTTTCTAGGTCGGGAAAGAATATTTTTTTTGTACATGAGACTAGACTAGTTGCGTAATTGCCTGCTATTGTAGGCTTCTATACTTTCTACTTTCTGTCTCCATAACTGGCATCTCCCTTGGAAACTTCTAGAGAGATTTTATATTATTCACAGTTCCCACTTTCTAATT

mRNA sequence

ATGGGAGAACCTCCATTTCTGTTGCTCCTAGTTTCGCTATTCTCGCTGATTCCGACTTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTATCACTCGTCGAGAACAGTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGGTTCCTATACCGAAGCCGGTCGGCTACACAGGAGCTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTGAGGTACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAATGGATATGCCTCATATCTATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCATTGGCCAAAGCATATCCTTGTCCGTTATACATGGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTGTTGCTGACTTTTATTCTGTCAATTTACATATTGCAATCATCGAAGGAGAAGTTAGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAGACTCACTCTACAACTCTACAACTCTACAACTCAATCCGTCTTACTCCTTAGGGTTAGGCTCCATTACGTCCATTCAAGGAAGTTCAATTACAATCACTCTATCAGATTTCACATTTCTTTTGAACACAAAAATGTAACTCTTTATCTGTATGGTAAGGTGTATATGCAACTCGGAAGACAATTACAGACAATTACAGACCCTTGTTTTCATTTTCTAGGTCGGGAAAGAATATTTTTTTTGTACATGAGACTAGACTAGTTGCGTAATTGCCTGCTATTGTAGGCTTCTATACTTTCTACTTTCTGTCTCCATAACTGGCATCTCCCTTGGAAACTTCTAGAGAGATTTTATATTATTCACAGTTCCCACTTTCTAATT

Coding sequence (CDS)

ATGGGAGAACCTCCATTTCTGTTGCTCCTAGTTTCGCTATTCTCGCTGATTCCGACTTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTATCACTCGTCGAGAACAGTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGGTTCCTATACCGAAGCCGGTCGGCTACACAGGAGCTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTGAGGTACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAATGGATATGCCTCATATCTATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCATTGGCCAAAGCATATCCTTGTCCGTTATACATGGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTGTTGCTGACTTTTATTCTGTCAATTTACATATTGCAATCATCGAAGGAGAAGTTAGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAG

Protein sequence

MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE

Homology

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BLAST of Cp4.1LG08g12500 vs. NCBI nr
Match: XP_023541018.1 (uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo] >KAG7027866.1 hypothetical protein SDJN02_09043 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 442 bits (1138), Expect = 8.67e-157
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL
Sbjct: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. NCBI nr
Match: XP_022971506.1 (uncharacterized protein LOC111470204 [Cucurbita maxima])

HSP 1 Score: 442 bits (1136), Expect = 1.75e-156
Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL+L
Sbjct: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLML 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. NCBI nr
Match: XP_022933336.1 (uncharacterized protein LOC111440559 [Cucurbita moschata])

HSP 1 Score: 441 bits (1133), Expect = 5.02e-156
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL
Sbjct: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. NCBI nr
Match: KAG6596313.1 (hypothetical protein SDJN03_09493, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 440 bits (1132), Expect = 7.13e-156
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL
Sbjct: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
            FILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 IFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. NCBI nr
Match: XP_004137681.1 (uncharacterized protein LOC101203220 [Cucumis sativus] >KGN58700.1 hypothetical protein Csa_002241 [Cucumis sativus])

HSP 1 Score: 413 bits (1061), Expect = 4.77e-145
Identity = 199/218 (91.28%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           M +PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNRE
Sbjct: 1   MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA+VPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L
Sbjct: 121 TAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           +FILS+YILQSSK+KLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 SFILSVYILQSSKDKLARFVRETVVESSIPGVGVAKVE 218

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BLAST of Cp4.1LG08g12500 vs. ExPASy TrEMBL
Match: A0A6J1I3H9 (uncharacterized protein LOC111470204 OS=Cucurbita maxima OX=3661 GN=LOC111470204 PE=4 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 8.47e-157
Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL+L
Sbjct: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLML 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. ExPASy TrEMBL
Match: A0A6J1EYS2 (uncharacterized protein LOC111440559 OS=Cucurbita moschata OX=3662 GN=LOC111440559 PE=4 SV=1)

HSP 1 Score: 441 bits (1133), Expect = 2.43e-156
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL
Sbjct: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. ExPASy TrEMBL
Match: A0A0A0L9R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730150 PE=4 SV=1)

HSP 1 Score: 413 bits (1061), Expect = 2.31e-145
Identity = 199/218 (91.28%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           M +PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNRE
Sbjct: 1   MAKPPILSLLLSLLSLLPILLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIYGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA+VPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L
Sbjct: 121 TAKVVDMPHIYIDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           +FILS+YILQSSK+KLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 SFILSVYILQSSKDKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. ExPASy TrEMBL
Match: A0A5A7TLX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00290 PE=4 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 1.90e-144
Identity = 200/218 (91.74%), Postives = 209/218 (95.87%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           M  PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MPNPPILSLLLSLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA+VPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKV+DMPHIY D+HPHI++QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L
Sbjct: 121 TAKVVDMPHIYTDTHPHITKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           +FILSIYILQSSK+KLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 SFILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. ExPASy TrEMBL
Match: A0A1S3B641 (uncharacterized protein LOC103486235 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486235 PE=4 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 1.90e-144
Identity = 200/218 (91.74%), Postives = 209/218 (95.87%), Query Frame = 0


Query: 1   MGEPPFLLLLVSLFSLIPTFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60
           M  PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE
Sbjct: 1   MPNPPILSLLLSLLSLVPISLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNRE 60

Query: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGV 120
           VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSA+VPMIDVHLRYSGSDLHGV
Sbjct: 61  VLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAEVPMIDVHLRYSGSDLHGV 120

Query: 121 TAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL 180
           TAKV+DMPHIY D+HPHI++QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L
Sbjct: 121 TAKVVDMPHIYTDTHPHITKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL 180

Query: 181 TFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE 218
           +FILSIYILQSSK+KLARFVRETVVESSIPGVGVAKVE
Sbjct: 181 SFILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE 218

[Close]

BLAST of Cp4.1LG08g12500 vs. TAIR 10
Match: AT3G51610.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 327.8 bits (839), Expect = 6.7e-90
Identity = 159/210 (75.71%), Postives = 180/210 (85.71%), Query Frame = 0


Query: 6   FLLLLVSLFSLIPTFL--AYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLV 65
           F+  LV L SL   FL  AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIF VNREVL+
Sbjct: 16  FIQALV-LISLSFPFLSSAYRPGDIVRMSKMGQYHSSRTTWHDVIGKHCPIFAVNREVLI 75

Query: 66  PIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHLRYSGSDLHGVTAK 125
           PI KP+GYTG DPYKI FQVG EKFL+ WLLVINRKS++VPMIDV+LRYSG DL GVTA+
Sbjct: 76  PIAKPIGYTGTDPYKIKFQVGSEKFLIHWLLVINRKSSEVPMIDVNLRYSGGDLLGVTAQ 135

Query: 126 VMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFI 185
           V+DMPH YL++HP I +QFWD QHWPKH+LVRYTW+EQSEIDV+SG YVLFGS L  +F+
Sbjct: 136 VIDMPHSYLNTHPEIRKQFWDPQHWPKHVLVRYTWKEQSEIDVSSGFYVLFGSALTFSFV 195

Query: 186 LSIYILQSSKEKLARFVRETVVESSIPGVG 214
           LSIY+LQSS+EKLARFVRETVVESS   VG
Sbjct: 196 LSIYVLQSSREKLARFVRETVVESSSMNVG 224

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12500 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g12500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541018.1	8.67e-157	100.00	uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo] >KAG7027866.1 ...	[more]
XP_022971506.1	1.75e-156	99.54	uncharacterized protein LOC111470204 [Cucurbita maxima]	[more]
XP_022933336.1	5.02e-156	99.54	uncharacterized protein LOC111440559 [Cucurbita moschata]	[more]
KAG6596313.1	7.13e-156	99.54	hypothetical protein SDJN03_09493, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004137681.1	4.77e-145	91.28	uncharacterized protein LOC101203220 [Cucumis sativus] >KGN58700.1 hypothetical ...	[more]

BLAST of Cp4.1LG08g12500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3H9	8.47e-157	99.54	uncharacterized protein LOC111470204 OS=Cucurbita maxima OX=3661 GN=LOC111470204...	[more]
A0A6J1EYS2	2.43e-156	99.54	uncharacterized protein LOC111440559 OS=Cucurbita moschata OX=3662 GN=LOC1114405...	[more]
A0A0A0L9R0	2.31e-145	91.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730150 PE=4 SV=1	[more]
A0A5A7TLX6	1.90e-144	91.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B641	1.90e-144	91.74	uncharacterized protein LOC103486235 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG08g12500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51610.1	6.7e-90	75.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36768	ATP-DEPENDENT HELICASE/DEOXYRIBONUCLEASE SUBUNIT B	coord: 7..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g12500.1	Cp4.1LG08g12500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009555	pollen development
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane