Cp4.1LG08g11950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g11950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionNuclear transport factor 2 (NTF2) family protein
LocationCp4.1LG08: 8772340 .. 8773733 (-)
RNA-Seq ExpressionCp4.1LG08g11950
SyntenyCp4.1LG08g11950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCACCATCAAAGGTCCAGTCCAGATCCATTCCACTTCCTCTACAGCTCCTGTACTCATTTTATCTTCGTTGCTGACTCTCGGACCCTGAAACTTGATCTCTTTCGCGTTTCTCAGCTGTTAAGAACCTTGTATGCTGCAAGTTCCTTCGAGCATGGCGCTCCATACATCTAGTTTGTGCTGCAATGTGAGTACTGCTTCGCTTCTTTGATCTAATATGAATTTATTTTGTTCTTCTCTTTCTACTTTTCATCATTGATGTTATTTTCAAGTGCATTAGCTTTATCTTCTGTAATTGATTTATATGTGTTCTTCATTGTAATGAATTGTCTCTCTGTTTAATTTTTATTTTATAAGCTTTATCTGGATCTGGATGTCAATTTTGAAATAGTTCGATGATGTTGTGATTTTCTAGGGTTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCACAGAGTTGTGAGGTGTTTCATCATGTTCCTTCAGCTCGCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTACAGGAGGATGCGGATTTCTTTTTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGTAAGTTTCATCGAATTTTTTCCATTTCCATGAGCTTTGATCTACTGCGTTTAAAATTTGTTTGAGTTTCCGTTTCTTTTATGAATTATACATTTTCGAGCCAGTGCAATGTATCTCTAATATAAGAATGGATAGACTAATACAGATATACAAAGAATTTTGTATAATTGAACTTTGAATCTTGCTCCAATTTCGTCAGTAAATCAGCATTTTGGTAATATCTAGCGCAGGGCCCTGTAAACTATCTACTAGGATGCTATCATTTCGACCTTGTCAACTGAAAGCCGAGAACTCAAGCGGTGAAAGCATTACACTCGATGCAGAAACCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTCTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

mRNA sequence

TGCACCATCAAAGGTCCAGTCCAGATCCATTCCACTTCCTCTACAGCTCCTGTACTCATTTTATCTTCGTTGCTGACTCTCGGACCCTGAAACTTGATCTCTTTCGCGTTTCTCAGCTGTTAAGAACCTTGTATGCTGCAAGTTCCTTCGAGCATGGCGCTCCATACATCTAGTTTGTGCTGCAATGGTTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCACAGAGTTGTGAGGTGTTTCATCATGTTCCTTCAGCTCGCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTACAGGAGGATGCGGATTTCTTTTTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGGCCCTGTAAACTATCTACTAGGATGCTATCATTTCGACCTTGTCAACTGAAAGCCGAGAACTCAAGCGGTGAAAGCATTACACTCGATGCAGAAACCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTCTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

Coding sequence (CDS)

ATGCTGCAAGTTCCTTCGAGCATGGCGCTCCATACATCTAGTTTGTGCTGCAATGGTTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCACAGAGTTGTGAGGTGTTTCATCATGTTCCTTCAGCTCGCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTACAGGAGGATGCGGATTTCTTTTTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGGCCCTGTAAACTATCTACTAGGATGCTATCATTTCGACCTTGTCAACTGAAAGCCGAGAACTCAAGCGGTGAAAGCATTACACTCGATGCAGAAACCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTCTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

Protein sequence

MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHASPIDL
Homology
BLAST of Cp4.1LG08g11950 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of Cp4.1LG08g11950 vs. NCBI nr
Match: XP_023539336.1 (uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 555 bits (1429), Expect = 1.63e-199
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0

Query: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60
           MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60

Query: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN
Sbjct: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 267
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

BLAST of Cp4.1LG08g11950 vs. NCBI nr
Match: KAG6596375.1 (F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 536 bits (1382), Expect = 2.39e-192
Identity = 260/267 (97.38%), Postives = 261/267 (97.75%), Query Frame = 0

Query: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60
           MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVP A PKQYDIGLVKAS G
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60

Query: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           G GF+ PSIPRCLGSTIGNFRPCK STRMLSFRPCQLKAENSSGESITLDAETLKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 267
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

BLAST of Cp4.1LG08g11950 vs. NCBI nr
Match: KAG7027924.1 (F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 535 bits (1377), Expect = 1.38e-191
Identity = 259/267 (97.00%), Postives = 261/267 (97.75%), Query Frame = 0

Query: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60
           MLQVPSSMALHTSSLCC+GYVTFISNRKSVRCSQSCEVFHHVP A PKQYDIGLVKAS G
Sbjct: 1   MLQVPSSMALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIG 60

Query: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           G GF+ PSIPRCLGSTIGNFRPCK STRMLSFRPCQLKAENSSGESITLDAETLKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 267
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

BLAST of Cp4.1LG08g11950 vs. NCBI nr
Match: XP_022941815.1 (uncharacterized protein LOC111447066 [Cucurbita moschata])

HSP 1 Score: 533 bits (1373), Expect = 5.63e-191
Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 0

Query: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60
           MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVF+HVPSA PKQYDIGLVKAS G
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG 60

Query: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           G GF+ PSIPRCLGSTIGNFRPCK S+RMLSFRPCQLKAENSSGESITLDAE LKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 267
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

BLAST of Cp4.1LG08g11950 vs. NCBI nr
Match: XP_022971333.1 (uncharacterized protein LOC111470086 [Cucurbita maxima])

HSP 1 Score: 524 bits (1349), Expect = 1.98e-187
Identity = 252/260 (96.92%), Postives = 254/260 (97.69%), Query Frame = 0

Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67
           MALHTSSLCCNGYVTFISNRK+VRCSQSCEVFHHVPSA PKQYDIG VK STGG GFLFP
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           SIPRCLGSTIGNFRPCK STRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
            GYDNV+TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 267
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Cp4.1LG08g11950 vs. ExPASy TrEMBL
Match: A0A6J1FUV2 (uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC111447066 PE=4 SV=1)

HSP 1 Score: 533 bits (1373), Expect = 2.73e-191
Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 0

Query: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTG 60
           MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVF+HVPSA PKQYDIGLVKAS G
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG 60

Query: 61  GCGFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQN 120
           G GF+ PSIPRCLGSTIGNFRPCK S+RMLSFRPCQLKAENSSGESITLDAE LKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 267
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

BLAST of Cp4.1LG08g11950 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 524 bits (1349), Expect = 9.61e-188
Identity = 252/260 (96.92%), Postives = 254/260 (97.69%), Query Frame = 0

Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67
           MALHTSSLCCNGYVTFISNRK+VRCSQSCEVFHHVPSA PKQYDIG VK STGG GFLFP
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           SIPRCLGSTIGNFRPCK STRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
            GYDNV+TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 267
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Cp4.1LG08g11950 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 463 bits (1191), Expect = 1.16e-163
Identity = 225/260 (86.54%), Postives = 238/260 (91.54%), Query Frame = 0

Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67
           MALHT +LCCN YVTFIS+RKSVRCSQS  VFHHVPSA PKQ +I LV +S+GG GFL P
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           S  R +GS  GNFRPCK ++R LSFRPCQLKAENSSGESITLDAETL+QDLQNAIADEDY
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 267
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Cp4.1LG08g11950 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 449 bits (1155), Expect = 3.56e-158
Identity = 221/260 (85.00%), Postives = 234/260 (90.00%), Query Frame = 0

Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67
           MAL TS+LCCN YVTFISN KSVRCSQS  VFHHVPSA PKQ +I LVK+S GG GFL P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           +  R + S  GNFRPCK ++R LSF P QLKAENSSGESITLDAETL+QDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 267
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Cp4.1LG08g11950 vs. ExPASy TrEMBL
Match: A0A1S3B5S8 (uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=4 SV=1)

HSP 1 Score: 449 bits (1155), Expect = 3.56e-158
Identity = 221/260 (85.00%), Postives = 234/260 (90.00%), Query Frame = 0

Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67
           MAL TS+LCCN YVTFISN KSVRCSQS  VFHHVPSA PKQ +I LVK+S GG GFL P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127
           +  R + S  GNFRPCK ++R LSF P QLKAENSSGESITLDAETL+QDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 267
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Cp4.1LG08g11950 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 5.0e-71
Identity = 144/270 (53.33%), Postives = 180/270 (66.67%), Query Frame = 0

Query: 8   MALHTSSLCCNGYVTFISNRKSVRC--SQSCEVFHHVPSARPKQYDI--GLVKAS-TGGC 67
           MALH S + C      +SN   +      S  + H      PK Y I   +V AS T G 
Sbjct: 1   MALHGSGVFCK-----VSNMVEITSPFGGSMRLLH-----LPKSYPIHCNMVSASNTFGS 60

Query: 68  GFLFPSIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSG----ESITLDAETLKQDL 127
             L           + N  PC         RPC++K E ++     ESI++D  TLKQDL
Sbjct: 61  AHL----------KLQNKEPCS------RLRPCRVKREENNQTADVESISMDENTLKQDL 120

Query: 128 QNAIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVC 187
           + A+ +E+Y  AA+IRD LK LQED+KASV +AN++FY+SFRNGDLAAMQ+LW++  + C
Sbjct: 121 ETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPC 180

Query: 188 CVHPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKG-S 247
           CVHPG +GI+GYD V+ SWE VW NYEFPL I+LKDVEVH RG+VGYVTC+E VKTKG S
Sbjct: 181 CVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSS 240

Query: 248 SWGGQFVTNVFERINGQWFICIHHASPIDL 268
           SWG QFV+NVFERI+GQWFICIHHASP+D+
Sbjct: 241 SWGAQFVSNVFERIDGQWFICIHHASPVDI 244

BLAST of Cp4.1LG08g11950 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 238.0 bits (606), Expect = 8.5e-63
Identity = 114/182 (62.64%), Postives = 142/182 (78.02%), Query Frame = 0

Query: 79  NFRPCKLSTRMLSFRPCQLKAENSSG----ESITLDAETLKQDLQNAIADEDYARAAEIR 138
           N  PC         RPC++K E ++     ESI++D  TLKQDL+ A+ +E+Y  AA+IR
Sbjct: 43  NKEPCS------RLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIR 102

Query: 139 DTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVI 198
           D LK LQED+KASV +AN++FY+SFRNGDLAAMQ+LW++  + CCVHPG +GI+GYD V+
Sbjct: 103 DKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVM 162

Query: 199 TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKG-SSWGGQFVTNVFERING 256
            SWE VW NYEFPL I+LKDVEVH RG+VGYVTC+E VKTKG SSWG QFV+NVFERI+G
Sbjct: 163 ESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDG 218

BLAST of Cp4.1LG08g11950 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of Cp4.1LG08g11950 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of Cp4.1LG08g11950 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0

Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q93YV91.3e-1233.33F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_023539336.11.63e-199100.00uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo][more]
KAG6596375.12.39e-19297.38F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7027924.11.38e-19197.00F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022941815.15.63e-19196.63uncharacterized protein LOC111447066 [Cucurbita moschata][more]
XP_022971333.11.98e-18796.92uncharacterized protein LOC111470086 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1FUV22.73e-19196.63uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC1114470... [more]
A0A6J1I6J49.61e-18896.92uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086... [more]
A0A0A0LA111.16e-16386.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1[more]
A0A5A7TRW43.56e-15885.00F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G... [more]
A0A1S3B5S83.56e-15885.00uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=... [more]
Match NameE-valueIdentityDescription
AT3G09250.15.0e-7153.33Nuclear transport factor 2 (NTF2) family protein [more]
AT3G09250.28.5e-6362.64Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.19.6e-1433.33Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.29.6e-1433.33Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.39.6e-1433.33Nuclear transport factor 2 (NTF2) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037401SnoaL-like domainPFAMPF13474SnoaL_3coord: 150..264
e-value: 7.2E-23
score: 81.2
NoneNo IPR availableGENE3D3.10.450.50coord: 137..266
e-value: 2.3E-41
score: 143.1
NoneNo IPR availablePANTHERPTHR34957NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 26..266
IPR001943UVR domainPFAMPF02151UVRcoord: 112..142
e-value: 2.0E-6
score: 27.3
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 143..265

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g11950.1Cp4.1LG08g11950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding