Cp4.1LG08g11660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g11660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	H/ACA ribonucleoprotein complex subunit 4-like
Location	Cp4.1LG08: 8618460 .. 8620208 (-)
RNA-Seq Expression	Cp4.1LG08g11660
Synteny	Cp4.1LG08g11660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATGTTGAGATTTCTCGTTCGGAGAAGAAGAAGAAGAAGCATCGGAGCAAGGATGAAGAAGTTTCACCAGTGGTAGGTTCCGACGAGCAGCCGCTCAAGGATGTTGCCGACTTTTTGATCAAGCCGCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTCTGAAGAACTACGACCGTCTCAATGTACGTACTGGACACTACACTCCTTTACCGTCTGGTTTCTCTCCTCTGAAGCGGCCTCTGATTGACTACATCAGGTATGGTATTCTCAACCTTGATAAACCGGCGAATCCTTCGTCGCACGAGGTTGTGGCTTGGATTAAACGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACACTGGATCCCAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGTCTCGTGAAGTCGCAACAGGGTGCTGGTAAGGAGTACGTGTGTGTTGCTCGTTTGCATTCTGCTGTGCCCGATGTTGCTAAGGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATATCGGCTGTGAAAAGACAGCTTAGGATTAGGACTATATATGAGAGTAAGCTTCTTGAATATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGAACTTACGTTAGAACGTTGTGTGTGCATTTGGGTCTCATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGCGGTCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACCACTTCTGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGTGATACATACCCAAGGAAATGGGGATTGGGTCCAAGGGCATCAATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAAGAGTGGCTAAGGAATTTGGTTTTGCCTACTGGTGGGGATTCATTGGTTGCAAGCGTTTTCGCTTCCGATACCGCCACTCCAAAGCAGAGCGTTGCAGCTGATGAGGAAAAAGATGGTTTAGGGCGGAAGCGGAAACACGATGAGGAAGCAGAAGCTGCAGCTCCTGCTAAGAAACTGAAAGGTGAAAAGGTCGAGGAAGCTGAAGAAGTCGAAGAATCCGGGAAGAAAGAGAAGAAAAAGAAGAAGAAAGATAAAGAGAAGGGAGGCATAGAAGCTTCAGATGATGAAAAGGCTGAGAAATCAGAGAAGAAAAAGAAGAAGAAAGAGAAGGATGCAAAAGAAGAAGCGGGTACTCCGGAGACAGAGAAGTCGGAGAAGAAGAAGAAGAAGAAAGACAAGGAGTCTGGAAATGATACTCAAAATGGGGAAGCAGATGACGATGTTGATGGGGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAACAAAGAAGAAGCAGACGAATAA

mRNA sequence

ATGTCGGATGTTGAGATTTCTCGTTCGGAGAAGAAGAAGAAGAAGCATCGGAGCAAGGATGAAGAAGTTTCACCAGTGGTAGGTTCCGACGAGCAGCCGCTCAAGGATGTTGCCGACTTTTTGATCAAGCCGCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTCTGAAGAACTACGACCGTCTCAATGTACGTACTGGACACTACACTCCTTTACCGTCTGGTTTCTCTCCTCTGAAGCGGCCTCTGATTGACTACATCAGGTATGGTATTCTCAACCTTGATAAACCGGCGAATCCTTCGTCGCACGAGGTTGTGGCTTGGATTAAACGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACACTGGATCCCAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGTCTCGTGAAGTCGCAACAGGGTGCTGGTAAGGAGTACGTGTGTGTTGCTCGTTTGCATTCTGCTGTGCCCGATGTTGCTAAGGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATATCGGCTGTGAAAAGACAGCTTAGGATTAGGACTATATATGAGAGTAAGCTTCTTGAATATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGAACTTACGTTAGAACGTTGTGTGTGCATTTGGGTCTCATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGCGGTCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACCACTTCTGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGTGATACATACCCAAGGAAATGGGGATTGGGTCCAAGGGCATCAATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAAGAGTGGCTAAGGAATTTGGTTTTGCCTACTGGTGGGGATTCATTGGTTGCAAGCGTTTTCGCTTCCGATACCGCCACTCCAAAGCAGAGCGTTGCAGCTGATGAGGAAAAAGATGGTTTAGGGCGGAAGCGGAAACACGATGAGGAAGCAGAAGCTGCAGCTCCTGCTAAGAAACTGAAAGGTGAAAAGGTCGAGGAAGCTGAAGAAGTCGAAGAATCCGGGAAGAAAGAGAAGAAAAAGAAGAAGAAAGATAAAGAGAAGGGAGGCATAGAAGCTTCAGATGATGAAAAGGCTGAGAAATCAGAGAAGAAAAAGAAGAAGAAAGAGAAGGATGCAAAAGAAGAAGCGGGTACTCCGGAGACAGAGAAGTCGGAGAAGAAGAAGAAGAAGAAAGACAAGGAGTCTGGAAATGATACTCAAAATGGGGAAGCAGATGACGATGTTGATGGGGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAACAAAGAAGAAGCAGACGAATAA

Coding sequence (CDS)

ATGTCGGATGTTGAGATTTCTCGTTCGGAGAAGAAGAAGAAGAAGCATCGGAGCAAGGATGAAGAAGTTTCACCAGTGGTAGGTTCCGACGAGCAGCCGCTCAAGGATGTTGCCGACTTTTTGATCAAGCCGCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTCTGAAGAACTACGACCGTCTCAATGTACGTACTGGACACTACACTCCTTTACCGTCTGGTTTCTCTCCTCTGAAGCGGCCTCTGATTGACTACATCAGGTATGGTATTCTCAACCTTGATAAACCGGCGAATCCTTCGTCGCACGAGGTTGTGGCTTGGATTAAACGGATTCTTCGGGTTGATAAAACGGGTCATAGTGGTACACTGGATCCCAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCCACGCGTCTCGTGAAGTCGCAACAGGGTGCTGGTAAGGAGTACGTGTGTGTTGCTCGTTTGCATTCTGCTGTGCCCGATGTTGCTAAGGTGGCTCGGGCTCTGGAGACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATATCGGCTGTGAAAAGACAGCTTAGGATTAGGACTATATATGAGAGTAAGCTTCTTGAATATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAGGCTGGAACTTACGTTAGAACGTTGTGTGTGCATTTGGGTCTCATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGCGGTCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACAAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTAATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACCACTTCTGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGTGATACATACCCAAGGAAATGGGGATTGGGTCCAAGGGCATCAATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAAGAGTGGCTAAGGAATTTGGTTTTGCCTACTGGTGGGGATTCATTGGTTGCAAGCGTTTTCGCTTCCGATACCGCCACTCCAAAGCAGAGCGTTGCAGCTGATGAGGAAAAAGATGGTTTAGGGCGGAAGCGGAAACACGATGAGGAAGCAGAAGCTGCAGCTCCTGCTAAGAAACTGAAAGGTGAAAAGGTCGAGGAAGCTGAAGAAGTCGAAGAATCCGGGAAGAAAGAGAAGAAAAAGAAGAAGAAAGATAAAGAGAAGGGAGGCATAGAAGCTTCAGATGATGAAAAGGCTGAGAAATCAGAGAAGAAAAAGAAGAAGAAAGAGAAGGATGCAAAAGAAGAAGCGGGTACTCCGGAGACAGAGAAGTCGGAGAAGAAGAAGAAGAAGAAAGACAAGGAGTCTGGAAATGATACTCAAAATGGGGAAGCAGATGACGATGTTGATGGGGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAACAAAGAAGAAGCAGACGAATAA

Protein sequence

MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEKKKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE

Homology

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 1.2e-223
Identity = 430/585 (73.50%), Postives = 490/585 (83.76%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M++V+IS S+KKK+     D               D  D++IKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVA-ADEEKDGLGRKRKHDEEAEAAAP--AKKLKGEK 480
           VLPTGGD+++A       A P++  A A+  + G  RKRKHD+ +++ AP   KK K ++
Sbjct: 421 VLPTGGDAIIAGA----AAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKE 480

Query: 481 VEEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEK 540
           V E EE EE  K  KKKKKKDKE+   E +  EK EK  KKKK K+++  EE  +P++EK
Sbjct: 481 V-EGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEK--KKKKDKKEEVIEEVASPKSEK 540

Query: 541 SEKKKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 583
            +KKKK KD E+  D ++  A +  +   +KKK KKKKNK+  D+
Sbjct: 541 -KKKKKSKDTEAAVDAEDESAAEKSE-KKKKKKDKKKKNKDSEDD 563

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 615.1 bits (1585), Expect = 7.9e-175
Identity = 327/531 (61.58%), Postives = 414/531 (77.97%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M+D E + +  KK K   K +E  P+  +D   ++   DFLIKP+S    +DTSQWP+LL
Sbjct: 1   MADAEAAMTFPKKHK---KKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KN+DRLNVRT HYTP+P G +PLKR + +Y+R G +NLDKP+NPSSHEVVAWI+RILRV+
Sbjct: 61  KNFDRLNVRTTHYTPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV V RLH+A+   A+++RALETL
Sbjct: 121 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGA+FQRPPLI+AVKRQLR+RTIYES+++EYD ++ L VFW+SCEAGTY+RTLCVHLGL+
Sbjct: 181 TGALFQRPPLIAAVKRQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGG MQELRRVRSG++GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+
Sbjct: 241 LGVGGQMQELRRVRSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSH 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLV+KDSAVNAICYGAK+M+PGLLR+E+ IEV +EVV++TTKGEA+ + IA MTT+V++
Sbjct: 301 KRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVIS 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRV+M+RDTYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ 
Sbjct: 361 TCDHGVVAKIKRVIMERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDY 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           V     DS   +  A   ATP   V AD     + RKR  D +A+ A P    +      
Sbjct: 421 V--DYSDSSKKATAAE--ATPGPGVTADAASI-VKRKRDSDSDADEATPTTTPR------ 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAG 532
                    K++KKKKK+K  GG EA++D   + + KKKKKK + A+E +G
Sbjct: 481 --------VKKEKKKKKEKADGGEEAAEDGDGDATRKKKKKKARAAEELSG 509

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 1.6e-172
Identity = 322/517 (62.28%), Postives = 399/517 (77.18%), Query Frame = 0


Query: 14  KKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK R KD+   P    D   ++   +FLIKP+S    +DTSQWP+LLKN+D+LNV T HY
Sbjct: 10  KKRRKKDKRSLP--DEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHY 69

Query: 74  TPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVT 133
           TPLPSG +PLKR + DY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVT
Sbjct: 70  TPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 129

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   A++ARA+ETLTGA+FQRPPLI+A
Sbjct: 130 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAA 189

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 190 VKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 249

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 313
           RSGILGE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAI
Sbjct: 250 RSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAI 309

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRV 373
           CYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEAI L IA MTT+V++TCDHG+VAKIKRV
Sbjct: 310 CYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRV 369

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASV 433
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +           V   
Sbjct: 370 IMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKK---------EYVDYR 429

Query: 434 FASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEEAEEVEESGKKEKK 493
            +S     K   A  E +    RKR+ + E EA +P         EE  + E+  KK++K
Sbjct: 430 ESSKKEAAKVPQAVSEVERAPKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKEK 489

Query: 494 KKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEA 531
           K K+  E G  +     ++   +KKKKKK+K+ +E +
Sbjct: 490 KAKEAAESGEEQVEVISESSAKKKKKKKKQKEVEESS 515

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy Swiss-Prot
Match: O60832 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 602.4 bits (1552), Expect = 5.3e-171
Identity = 326/533 (61.16%), Postives = 408/533 (76.55%), Query Frame = 0


Query: 1   MSDVEI---SRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWP 60
           M+D E+    +  KKKK+ +S  EE       D   ++   +FLIKP+S    +DTSQWP
Sbjct: 1   MADAEVIILPKKHKKKKERKSLPEE-------DVAEIQHAEEFLIKPESKVAKLDTSQWP 60

Query: 61  ILLKNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRIL 120
           +LLKN+D+LNVRT HYTPL  G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RIL
Sbjct: 61  LLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRIL 120

Query: 121 RVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARAL 180
           RV+KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+A+    +++RAL
Sbjct: 121 RVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRAL 180

Query: 181 ETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHL 240
           ETLTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHL
Sbjct: 181 ETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHL 240

Query: 241 GLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVL 300
           GL+LGVGG MQELRRVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +L
Sbjct: 241 GLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLL 300

Query: 301 TSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTS 360
           TS+KRLV+KDSAVNAICYGAK+M+PG+LR+E+ IEV +E+V++TTKGEAI + IA MTT+
Sbjct: 301 TSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTA 360

Query: 361 VMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWL 420
           V++TCDHGIVAKIKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP ++TP  W 
Sbjct: 361 VISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWK 420

Query: 421 RNLVLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEK 480
           +  V     +S    V A     P+  V A+  K    RKR+ + E++   PA       
Sbjct: 421 QEYV--DYSESAKKEVVAEVVKAPQ--VVAEAAKTA-KRKRESESESDETPPA------- 480

Query: 481 VEEAEEVEESGKKEKKKKKKDKE-KGGIEA-SDDEKAEKSEKKKKKKEKDAKE 529
                   +  KKEKKK KKDK+ K G+E+ ++    +    KKKKK+K AKE
Sbjct: 481 ------APQLIKKEKKKSKKDKKAKAGLESGAEPGDGDSDTTKKKKKKKKAKE 508

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 601.7 bits (1550), Expect = 9.0e-171
Identity = 321/532 (60.34%), Postives = 403/532 (75.75%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M+D E+    KK KK + +     P+   D   ++   +FLIKP+S    +DTSQWP+LL
Sbjct: 1   MADAEVITFPKKHKKKKDR----KPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KN+D+LNVRT HYTPLP G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RILRV+
Sbjct: 61  KNFDKLNVRTAHYTPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+A+    +++RALETL
Sbjct: 121 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGA+FQRPPLI+AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+
Sbjct: 181 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGG MQELRRVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+
Sbjct: 241 LGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSH 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLV+KDSAVNAICYGAK+M+PGLLR+E+ IEV +E+V++TTKGEAI + IA MTT+V++
Sbjct: 301 KRLVMKDSAVNAICYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVIS 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ 
Sbjct: 361 TCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDY 420

Query: 421 V--LPTGGDSLVA-SVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEK 480
           +    +G ++LV  +V A   A    +V           KRK D E+E+         ++
Sbjct: 421 IDYSDSGKNTLVTEAVQAPQLAAEAVNVI----------KRKRDSESES---------DE 480

Query: 481 VEEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEE 530
                +++E  KK+ KK K   E GG     D    K +KKKK K  +   E
Sbjct: 481 TPTVPQLKEKKKKKDKKPKTVLESGGETGDGDNDTTKKKKKKKVKVVEEMSE 509

[Close]

BLAST of Cp4.1LG08g11660 vs. NCBI nr
Match: XP_023539854.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1090 bits (2820), Expect = 0.0
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540

Query: 541 KKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           KKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE
Sbjct: 541 KKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582

[Close]

BLAST of Cp4.1LG08g11660 vs. NCBI nr
Match: XP_022941699.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411.1 H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1075 bits (2779), Expect = 0.0
Identity = 575/583 (98.63%), Postives = 579/583 (99.31%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASDTATPKQSVAADEEKDG+GRKRKHDEE EAAAPAKKLKGEKVEE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEE+EESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKK+KDAKEEAGTPETEKSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKK-DKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           KKKKK DKESGNDTQNGEA+  VDGGSEKKKKKKKKNKEEADE
Sbjct: 541 KKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKEEADE 583

[Close]

BLAST of Cp4.1LG08g11660 vs. NCBI nr
Match: KAG7027955.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1073 bits (2775), Expect = 0.0
Identity = 574/583 (98.46%), Postives = 578/583 (99.14%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASDT TPKQSVAADEEKDG+GRKRKHDEE EAAAPAKKLKGEKVEE
Sbjct: 421 VLPTGGDSLVASVFASDTTTPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEE+EESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKK+KDAKEEAGTPETEKSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKK-DKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           KKKKK DKESGNDTQNGEA+  VDGGSEKKKKKKKKNKEEADE
Sbjct: 541 KKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKEEADE 583

[Close]

BLAST of Cp4.1LG08g11660 vs. NCBI nr
Match: XP_022971402.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 1049 bits (2712), Expect = 0.0
Identity = 565/581 (97.25%), Postives = 569/581 (97.93%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVV SDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASDTATPKQ+VAADEEKDG+G+KRKHDEE EAAAPAKKLKGEK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEK EKKKKKK+KDAKE AGTPETEKSEK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKE-AGTPETEKSEK 540

Query: 541 KKKKK-DKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEA 580
           KKKKK DKESGNDTQNGEAD  VDGGSEKKKK    NKEEA
Sbjct: 541 KKKKKKDKESGNDTQNGEADGHVDGGSEKKKK----NKEEA 576

[Close]

BLAST of Cp4.1LG08g11660 vs. NCBI nr
Match: XP_022934839.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 970 bits (2507), Expect = 0.0
Identity = 531/584 (90.92%), Postives = 549/584 (94.01%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP VGSDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASD+AT  +    + EKDG GRKRK DEE EAA PAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEGKQ-ETEKDGGGRKRKLDEETEAA-PAKKLKAEKTED 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPE-TEKSE 540
           AEEVEE GKKEKKKKKKDKEKG  E SD+E   + EKKKKKK+K+ KE AGTPE T+KSE
Sbjct: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKE-AGTPEETQKSE 540

Query: 541 KKKKKKDKESG-NDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           KKKKKKDKESG  D QNGEADD VDG SEKKKKKKKKNKE+A+E
Sbjct: 541 KKKKKKDKESGVGDVQNGEADDHVDG-SEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 1075 bits (2779), Expect = 0.0
Identity = 575/583 (98.63%), Postives = 579/583 (99.31%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASDTATPKQSVAADEEKDG+GRKRKHDEE EAAAPAKKLKGEKVEE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEE+EESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKK+KDAKEEAGTPETEKSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKK-DKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           KKKKK DKESGNDTQNGEA+  VDGGSEKKKKKKKKNKEEADE
Sbjct: 541 KKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKEEADE 583

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 1049 bits (2712), Expect = 0.0
Identity = 565/581 (97.25%), Postives = 569/581 (97.93%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MSDVEISRSEKKKKKHRSKDEEVSPVV SDEQPLKDVADFLIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASDTATPKQ+VAADEEKDG+G+KRKHDEE EAAAPAKKLKGEK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEK EKKKKKK+KDAKE AGTPETEKSEK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKE-AGTPETEKSEK 540

Query: 541 KKKKK-DKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEA 580
           KKKKK DKESGNDTQNGEAD  VDGGSEKKKK    NKEEA
Sbjct: 541 KKKKKKDKESGNDTQNGEADGHVDGGSEKKKK----NKEEA 576

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 970 bits (2507), Expect = 0.0
Identity = 531/584 (90.92%), Postives = 549/584 (94.01%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP VGSDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFASD+AT  +    + EKDG GRKRK DEE EAA PAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEGKQ-ETEKDGGGRKRKLDEETEAA-PAKKLKAEKTED 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPE-TEKSE 540
           AEEVEE GKKEKKKKKKDKEKG  E SD+E   + EKKKKKK+K+ KE AGTPE T+KSE
Sbjct: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKE-AGTPEETQKSE 540

Query: 541 KKKKKKDKESG-NDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           KKKKKKDKESG  D QNGEADD VDG SEKKKKKKKKNKE+A+E
Sbjct: 541 KKKKKKDKESGVGDVQNGEADDHVDG-SEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 967 bits (2499), Expect = 0.0
Identity = 526/584 (90.07%), Postives = 545/584 (93.32%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS+VEISRSEKKKKKHRSKDE+VSP VGSDEQP KD ADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDVAKV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVAS FA+D A   +      EKDG GRKRK DE+ EAA P KKLK EK EE
Sbjct: 421 VLPTGGDSLVASHFAADAADEGKQET---EKDGGGRKRKLDEDMEAA-PTKKLKTEKAEE 480

Query: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEKSEK 540
           AEEV+E GKKEKKKKKKDKEKG +E +D+E  EKSEKKKKKK+K+AKE AGTPETEKSEK
Sbjct: 481 AEEVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKE-AGTPETEKSEK 540

Query: 541 KKKKKDKESGND-------TQNGEADDDVDGGSEKKKKKKKKNK 577
           KKKKKDKESGND        QNGEAD  VDG SEKKKKKKKKNK
Sbjct: 541 KKKKKDKESGNDHSQSPAGIQNGEADGHVDG-SEKKKKKKKKNK 578

[Close]

BLAST of Cp4.1LG08g11660 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 957 bits (2475), Expect = 0.0
Identity = 529/585 (90.43%), Postives = 548/585 (93.68%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP VGSDEQP KDVADF+IKPQSFTP VDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480
           VLPTGGDSLVASVFA+D+AT  +    + EKDG GRKRK DEE EAA PAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFATDSATVDEGKQ-ETEKDGGGRKRKLDEETEAA-PAKKLKAEKTED 480

Query: 481 AEEVEESGKKEKKKKKK-DKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPET-EKS 540
           AEEVEE GKKEKKKKKK DKEKG  E SD+E  E+SEKKKKK +K+ KE AGTPE  +KS
Sbjct: 481 AEEVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSEKKKKK-DKEGKE-AGTPEEKQKS 540

Query: 541 EKKKKKKDKESG-NDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 582
           EKKKKKKDKESG  D QNGEADD VDG SEKKKKKKKKNKE+A+E
Sbjct: 541 EKKKKKKDKESGVGDVQNGEADDHVDG-SEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG08g11660 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 777.3 bits (2006), Expect = 8.5e-225
Identity = 430/585 (73.50%), Postives = 490/585 (83.76%), Query Frame = 0


Query: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60
           M++V+IS S+KKK+     D               D  D++IKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHSKKKKQDKTEND-------------AADTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFASDTATPKQSVA-ADEEKDGLGRKRKHDEEAEAAAP--AKKLKGEK 480
           VLPTGGD+++A       A P++  A A+  + G  RKRKHD+ +++ AP   KK K ++
Sbjct: 421 VLPTGGDAIIAGA----AAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKE 480

Query: 481 VEEAEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKEEAGTPETEK 540
           V E EE EE  K  KKKKKKDKE+   E +  EK EK  KKKK K+++  EE  +P++EK
Sbjct: 481 V-EGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEK--KKKKDKKEEVIEEVASPKSEK 540

Query: 541 SEKKKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEEADE 583
            +KKKK KD E+  D ++  A +  +   +KKK KKKKNK+  D+
Sbjct: 541 -KKKKKSKDTEAAVDAEDESAAEKSE-KKKKKKDKKKKNKDSEDD 563

[Close]

BLAST of Cp4.1LG08g11660 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-20
Identity = 64/202 (31.68%), Postives = 100/202 (49.50%), Query Frame = 0


Query: 95  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 154
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 155 KEYVCVARLHSAV-------PDVAK----------VARALETLTGAVFQRPPLISAVK-- 214
           K Y  V RL  A        P + +          + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 215 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 263
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g11660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	1.2e-223	73.50	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
P40615	7.9e-175	61.58	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
Q5ZJH9	1.6e-172	62.28	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
O60832	5.3e-171	61.16	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=...	[more]
Q9ESX5	9.0e-171	60.34	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]

BLAST of Cp4.1LG08g11660 vs. NCBI nr


Match Name	Identity	Description
XP_023539854.1	100.00	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941699.1	98.63	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411....	[more]
KAG7027955.1	98.46	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_022971402.1	97.25	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]
XP_022934839.1	90.92	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG08g11660 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1FP65	98.63	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	97.25	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F3Q2	90.92	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CVU2	90.07	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1J6M3	90.43	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Cp4.1LG08g11660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	8.5e-225	73.50	homologue of NAP57	[more]
AT5G14460.1	8.7e-20	31.68	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 478..498
None	No IPR available	COILS	Coil	Coil	coord: 504..530
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 86..292 e-value: 6.2E-182 score: 605.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 561..582
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 444..554
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..582
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 8..578
None	No IPR available	PROSITE	PS50890	PUA	coord: 300..375 score: 19.235785
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 92..274 e-value: 3.88154E-134 score: 386.617
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 52..110 e-value: 1.3E-31 score: 121.1
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 53..110 e-value: 3.0E-30 score: 104.1
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 301..375 e-value: 9.5E-25 score: 98.2
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 301..373 e-value: 5.8E-22 score: 77.5
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 60..385 e-value: 1.6E-160 score: 531.4
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 8..578
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 297..372 e-value: 1.2E-8 score: 33.1
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 231..297 e-value: 1.2E-22 score: 79.8
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 53..384 e-value: 6.2E-182 score: 605.9
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 114..230 e-value: 2.9E-19 score: 69.9
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 300..381
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 53..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g11660.1	Cp4.1LG08g11660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006396	RNA processing
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding