Cp4.1LG08g11450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g11450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Histone H2B
Location	Cp4.1LG08: 8570720 .. 8571139 (+)
RNA-Seq Expression	Cp4.1LG08g11450
Synteny	Cp4.1LG08g11450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAACAAAAGCCGAAAAAAAGCCAGCAGAGAAGAAACCGGCGGAGAAGACCCCAACCTCGGCGGAGAAGAAGCCAAAGGCCGAGAAGAAGATCGCCAAGGACAGCGGCGATAAGAAGAAGAAGAAAATCAAAAAGAGCACCGAGACTTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCTGACATTGGAATTTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTCGAGAAACTTGCGCAAGAGTCTTCGAAATTGGCGAGATACAACAAGAAACCTACGATCACCTCTCGGGAGATCCAGACCGCCGTTCGATTGGTGTTGCCTGGTGAGTTAGCAAAGCACGCTGTTTCTGAAGGAACTAAGGCGGTCACCAAATTTACGAGCTCTTAG

mRNA sequence

ATGGCGCCAACAAAAGCCGAAAAAAAGCCAGCAGAGAAGAAACCGGCGGAGAAGACCCCAACCTCGGCGGAGAAGAAGCCAAAGGCCGAGAAGAAGATCGCCAAGGACAGCGGCGATAAGAAGAAGAAGAAAATCAAAAAGAGCACCGAGACTTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCTGACATTGGAATTTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTCGAGAAACTTGCGCAAGAGTCTTCGAAATTGGCGAGATACAACAAGAAACCTACGATCACCTCTCGGGAGATCCAGACCGCCGTTCGATTGGTGTTGCCTGGTGAGTTAGCAAAGCACGCTGTTTCTGAAGGAACTAAGGCGGTCACCAAATTTACGAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAACAAAAGCCGAAAAAAAGCCAGCAGAGAAGAAACCGGCGGAGAAGACCCCAACCTCGGCGGAGAAGAAGCCAAAGGCCGAGAAGAAGATCGCCAAGGACAGCGGCGATAAGAAGAAGAAGAAAATCAAAAAGAGCACCGAGACTTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCTGACATTGGAATTTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTCGAGAAACTTGCGCAAGAGTCTTCGAAATTGGCGAGATACAACAAGAAACCTACGATCACCTCTCGGGAGATCCAGACCGCCGTTCGATTGGTGTTGCCTGGTGAGTTAGCAAAGCACGCTGTTTCTGAAGGAACTAAGGCGGTCACCAAATTTACGAGCTCTTAG

Protein sequence

MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-57
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKD-SGDKKKKKIKKSTETYKIYIFKV 60
           M PTKAEKKPAEKKPAEK P  AEKKPKAEKKI+K+ S DKKKK+ KKS ETYKIYIFKV
Sbjct: 1   MPPTKAEKKPAEKKPAEKAP--AEKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-54
Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSG--DKKKKKIKKSTETYKIYIFK 60
           MAP  AEKKPAEKKPA K P  AEK PKAEKKI+KD+G  +KKKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAP--AEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 139
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy Swiss-Prot
Match: Q9FFC0 (Histone H2B.10 OS=Arabidopsis thaliana OX=3702 GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-53
Identity = 122/143 (85.31%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 5   KAEKKPAEKKPAEKTP-----TSAEKKPKAEKKIAKD---SGDKKKKKIKKSTETYKIYI 64
           KA+KKPAEKKPAEKTP      +AEKKPKA KK+ K+   +GDKKKK+ KK+ ETYKIYI
Sbjct: 3   KADKKPAEKKPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYI 62

Query: 65  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLV 124
           FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVRLV
Sbjct: 63  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLV 122

Query: 125 LPGELAKHAVSEGTKAVTKFTSS 140
           LPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 LPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-53
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSG-DKKKKKIKKSTETYKIYIFKV 60
           MAP  AEKKPA KKPAEK P  AEK PKAEKKI K+ G +KKKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAP--AEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy Swiss-Prot
Match: O65819 (Histone H2B.3 (Fragment) OS=Solanum lycopersicum OX=4081 GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.0e-53
Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 9   KPAEKKPAEKTPTS----AEKKPKAEKKIAKD--SGDKKKKKIKKSTETYKIYIFKVLKQ 68
           KPAEKKPAEKTP +    AEKKPKA KK+ KD  +GDKKKK+ KK+ ETYKIYIFKVLKQ
Sbjct: 1   KPAEKKPAEKTPVAEKAPAEKKPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQ 60

Query: 69  VHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELA 128
           VHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELA
Sbjct: 61  VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 120

Query: 129 KHAVSEGTKAVTKFTSS 140
           KHAVSEGTKAVTKFTSS
Sbjct: 121 KHAVSEGTKAVTKFTSS 137

[Close]

BLAST of Cp4.1LG08g11450 vs. NCBI nr
Match: XP_022958236.1 (probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B.3 [Cucurbita maxima] >XP_023538865.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6596423.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027965.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251 bits (642), Expect = 9.31e-84
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. NCBI nr
Match: XP_008442575.1 (PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like [Cucumis melo var. makuwa] >TYK25065.1 histone H2B-like [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (635), Expect = 1.09e-82
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. NCBI nr
Match: XP_038903506.1 (probable histone H2B.3 [Benincasa hispida])

HSP 1 Score: 245 bits (626), Expect = 2.56e-81
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEK P+SAEKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKAPSSAEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. NCBI nr
Match: XP_022935032.1 (probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B.3 [Cucurbita maxima] >XP_023527987.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6580565.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017318.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (616), Expect = 8.57e-80
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. NCBI nr
Match: XP_004137790.1 (probable histone H2B.3 [Cucumis sativus] >KGN58892.1 hypothetical protein Csa_002030 [Cucumis sativus])

HSP 1 Score: 238 bits (606), Expect = 2.78e-78
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+SAEKKPKAEKKI KD GDKKKK +KKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy TrEMBL
Match: A0A6J1KUE6 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 4.51e-84
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy TrEMBL
Match: A0A6J1H1K6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111459261 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 4.51e-84
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy TrEMBL
Match: A0A5D3DN75 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 PE=3 SV=1)

HSP 1 Score: 249 bits (635), Expect = 5.26e-83
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy TrEMBL
Match: A0A1S3B6N1 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1)

HSP 1 Score: 249 bits (635), Expect = 5.26e-83
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. ExPASy TrEMBL
Match: A0A6J1IZM1 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111481391 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 4.15e-80
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG08g11450 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSG--DKKKKKIKKSTETYKIYIFK 60
           MAP  AEKKPAEKKPA K P  AEK PKAEKKI+KD+G  +KKKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAP--AEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 139
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cp4.1LG08g11450 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-54
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSG-DKKKKKIKKSTETYKIYIFKV 60
           MAP  AEKKPA KKPAEK P  AEK PKAEKKI K+ G +KKKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAP--AEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG08g11450 vs. TAIR 10
Match: AT5G22880.1 (histone B2 )

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-54
Identity = 122/143 (85.31%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 5   KAEKKPAEKKPAEKTP-----TSAEKKPKAEKKIAKD---SGDKKKKKIKKSTETYKIYI 64
           KA+KKPAEKKPAEKTP      +AEKKPKA KK+ K+   +GDKKKK+ KK+ ETYKIYI
Sbjct: 3   KADKKPAEKKPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYI 62

Query: 65  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLV 124
           FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVRLV
Sbjct: 63  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLV 122

Query: 125 LPGELAKHAVSEGTKAVTKFTSS 140
           LPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 LPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG08g11450 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53
Identity = 124/152 (81.58%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTS---------AEKKPKAEKKIAKDS----GDKKKKKIKK 60
           MAP KA KKPAEKKPAEK P           AEKKPKA KK+ K++     +KKKK++KK
Sbjct: 1   MAP-KAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Cp4.1LG08g11450 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.2e-53
Identity = 124/151 (82.12%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPTS---------AEKKPKAEKKIAKDS---GDKKKKKIKKS 60
           MAP KAEKKPAEKKPA + P           AEKKPKA KK+ K++   GDKKKK  KKS
Sbjct: 1   MAP-KAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g11450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SU99	4.6e-57	90.71	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9ZUS0	1.6e-54	88.57	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
Q9FFC0	2.4e-53	85.31	Histone H2B.10 OS=Arabidopsis thaliana OX=3702 GN=At5g22880 PE=1 SV=3	[more]
Q9LFF6	2.4e-53	87.14	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
O65819	9.0e-53	86.86	Histone H2B.3 (Fragment) OS=Solanum lycopersicum OX=4081 GN=H2B-3 PE=2 SV=1	[more]

BLAST of Cp4.1LG08g11450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958236.1	9.31e-84	100.00	probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B...	[more]
XP_008442575.1	1.09e-82	98.56	PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like ...	[more]
XP_038903506.1	2.56e-81	97.12	probable histone H2B.3 [Benincasa hispida]	[more]
XP_022935032.1	8.57e-80	95.68	probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B...	[more]
XP_004137790.1	2.78e-78	94.96	probable histone H2B.3 [Cucumis sativus] >KGN58892.1 hypothetical protein Csa_00...	[more]

BLAST of Cp4.1LG08g11450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KUE6	4.51e-84	100.00	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1	[more]
A0A6J1H1K6	4.51e-84	100.00	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111459261 PE=3 SV=1	[more]
A0A5D3DN75	5.26e-83	98.56	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 P...	[more]
A0A1S3B6N1	5.26e-83	98.56	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1	[more]
A0A6J1IZM1	4.15e-80	95.68	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111481391 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g11450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37470.1	1.2e-55	88.57	Histone superfamily protein	[more]
AT3G53650.1	1.7e-54	87.14	Histone superfamily protein	[more]
AT5G22880.1	1.7e-54	85.31	histone B2	[more]
AT2G28720.1	1.9e-53	81.58	Histone superfamily protein	[more]
AT5G59910.1	4.2e-53	82.12	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 123..136 score: 92.65 coord: 93..110 score: 76.51 coord: 71..91 score: 75.74 coord: 110..123 score: 92.45 coord: 52..70 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 42..138 e-value: 3.3E-72 score: 255.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..139
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 107..129
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..115 e-value: 2.9E-22 score: 79.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..139 e-value: 2.2E-59 score: 201.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 23..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR23428:SF273	HISTONE H2B.4	coord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g11450.1	Cp4.1LG08g11450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity