Cp4.1LG08g11300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g11300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nuclear transcription factor Y subunit B
Location	Cp4.1LG08: 8440769 .. 8444534 (-)
RNA-Seq Expression	Cp4.1LG08g11300
Synteny	Cp4.1LG08g11300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATATTCATGGGTTTTGTTGATGATGTTGTCTCGTTATTGGTTTTTTGTGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGTATGGAAGTGTTTATTGTTCTATAGTTAATTGTTGTTCGTTTCTTGTTCTGAATTTTGGGATTCTTATGGTTGAATTGTATTTAGGGCTAGTGATAAATGTCAAAGAGAGAAACGAAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGTACTCAAAATCGGCTAATGCTAATGTTAATGCATCGCCGGCCGTTCTTTCACTATGTGTTCTGTTATCCACTTTTCATGATTCATTTGAAACAGGGAGCTCAGCTCATCATTTAGTCTCAACTTTTGATTTATTTAGTTCTTGTTTGTTAATTTTACTGCTGTTCGTTGTGTTCTTGAACTGATGGATGGCTGTGTTCTTTGCCTGCTGGTTGGGACTTGGGGCGTTTTAGACTGAGGTAAGATAGAGTGTTTTCCTCTACGTTTCTGTGATTTGTCAACATCATGTTTGAATGAAATTAGGAGATTTCTATATATTGTTTGTGTTGTGTTGTCTGACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTCAATTATAAGAGTTACTTTTTTCTCATTGAGCTGCCTTTTTGGTGTTTTCTTCTAAGCTTTTTTCTTTCCCAATTCTCTAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAAGTACTCTCTCTCTCTCTCTCATACACACGCACATACACACAAACAAGCACGTACTTCCATAATGTCCTTTGAATAAGCGAAGAAGCAGTTATGCTAGTGTATTTGGATTGTGAAAAGTTTTTTTTTCATCTCATTAGTCTAACTTTAACGTCATAAAATGACTCAAATTTGAAAGAACAAGAAAAAAATCATAATTACGAAAAGCCTAGTGACCAGCCCAAGCACACCGCTAGCAGATATTGTTCTTTTTTGGTTTTCCTTTCTAGGCTTCTCCTCAAGGTTTTAAAACACGTCTGCTAGGGAGAGGTTTTCACACCCTTATAAGAAATGCTTTTGTTTCCCTCTCCAATCGATGTGAAATCTCACATTCAACCTGTGATGCCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGGCCTGGGTTGTTACAAATGGTATCAAAGTCAGACACCGGATGATGTGTCAGCCTTCTCGCTGTTCCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCAAAGGGGGGTGGATTTAGGGGTGGTCCCACATCGATTAGAGGAAGGAAAGAATGCCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGGCCTGGGTTGTTACAAATGGTATCAAAGTCAGACACCGGATGATGTGTCAGCCTTCTCGCTGTTCCCGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGGCCCAAAGGGGGGTGGATTTAGGGGTGGTCCCACATCGATTAGAGGAAGGAAAGAATGCCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTTTGGAAACCTTTCCCTAGTAGACGCGTTTTAAAGCCTTGAGGGGAAGCTCGAAAAAGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGGGCCTAGGTTGTTACACCACCACTCCCTTCGGGAGCTCAACGTCCTCGCTGGCACACCGCCTAGTAACCGGCTTTAATACCATGTGTAACAACCCAAACCTACCGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTCTGAGCTTCTTCTCGAGGTTTTAAAATCCCTATGTTAGGGAGAAGTTTTCACACCCTTATAAGGAATGCTTTGTTCCCCTCTCCAAAGGATGTGGGATCTCACAGAGGAAGATGATAATTCATGAGTGTTTATCCAACTAAAAGTCATTTTCCAGTTGGAAGCAACCGTTTGTAACTCATGTCTACTTTTGTGTCACGAAGCGAGGCGAATCCCATTGGTAGACTCCCCATTACTCCCCATGATTTGCAGAATCTGTTACGGTTTGCTAGAGTTCATCCTTTCTACTCTCTCTCTTAGTAACTTCATTGTTTTAGAAAAGTAATTTTGTTTCTAGTTCATACTTCATATCTTCATGAGTCTTGGAAGTTCTTTCCTGAGGCAAAGCATCTGTCTCTTAATATCACTTGGGGTTTATTGTTAGAGCTTTCATATGCAAGTCTTGGTTGAAATATATGAACAATTAGTACATAAATTTGAATGTCTCAAGGAGATGACTTGCAGGAGTAAAAGGCTATTTCCCTTGTAGCTTTGGTGATAGGGAAGTATATTGGTATTTGCATCTTTTTAAGCTATCTAGAAAATGAGCATGTAACTTCTTTGAACTTCTCTAAATTGAGATACCCTTTTGAGTATAGTGGTCAAATAAATAATTAAAGGACTAGGTGAGAATCGGTTCAAGCCATGTTGGCTACTTACCTAAGATATAATATTCTACTAGTTACCGTGACAATCAAATATAGTAGGATCGCTGACCCAGACATTCACGGATATAGAAATAATTAGAATCCCGGGTCCTATAAAAACATTTAAGACATAAATGAGCAGGAATGAACCAGCTACAAGTACATGTTAGAAACGTTGTTTTTACCATTCACAATAGTTTCAAGTAGTTGACTTGGAAGTGTTTCTCCTCTTTAGGTTTAATACCCACCTTGGCATTTTTTGCAGTCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAAATTGCCTCGAAATCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCATAACAGCAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAATAGGACACAACATTTAAGAGATTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAAAAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAATGAATGACTTGGTTCTAGAAGTGTTCTTAAATCCCCC

mRNA sequence

ATGGTCATATTCATGGGTTTTGTTGATGATGTTGTCTCGTTATTGGTTTTTTGTGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGAAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGTACTCAAAATCGGCTAATGCTAATGTTAATGCATCGCCGGCCGTTCTTTCACTATGTGTTCTGTTATCCACTTTTCATGATTCATTTGAAACAGGGAGCTCAGCTCATCATTTAGTCTCAACTTTTGATTTATTTAGTTCTTGTTTGTTAATTTTACTGCTGTTCGTTGTGTTCTTGAACTGATGGATGGCTGTGTTCTTTGCCTGCTGGTTGGGACTTGGGGCGTTTTAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCAGCTAAGAAGGAAGCTCATCCAACCCCTGGTGCTCAGGTTGCTCATCAAGGGACGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACCGACTAAAATTGCCTCGAAATCGACCATTTAAACTGTTGAATACGGAGATCGTTGTTCAGCATAACAGCAAAAAATCGAGTCTATTTATTTGAAGTTTGGGTGGTTTCAATACTTTGTAGAAACAGTTGAAATGTTGTATATTATTATGGCTCTTGTTTATTGGATTGGAATAGGACACAACATTTAAGAGATTCCTTCCAAGTCCTGGGGATCCCATTTATTGGTGACTTGTAGTAAACCTTACAACCCTAGCAAGGACTTGGATGGAAGATCTTGAAAAAGACCCTTCACATTTTCTTTAATCATTTCCCTAATCAAAACAATAAATTTGTGTTCTCAGGAATGAATGACTTGGTTCTAGAAGTGTTCTTAAATCCCCC

Coding sequence (CDS)

ATGGTCATATTCATGGGTTTTGTTGATGATGTTGTCTCGTTATTGGTTTTTTGTGATAGGGTAGTGAAGAACATGGCTGATGCTCCGGCGAGCCCTGGCGGAGGTAGCCATGAGAGCGGTGAGCATAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGTAAGATTGCGAAGGATGCCAAGGAGACCGTACAAGAATGTGTTTCGGAGTTCATCAGTTTTATCACTAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGAAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTAAAAACCTACTTGACGAAATACAGAGAGGTACTCAAAATCGGCTAA

Protein sequence

MVIFMGFVDDVVSLLVFCDRVVKNMADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREVLKIG

Homology

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.1e-51
Identity = 106/123 (86.18%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 25  MADAPASP--GGGSHESGEHSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKD 84
           MA+APASP  GGGSHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKD
Sbjct: 1   MAEAPASPGGGGGSHESG--SPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKD 60

Query: 85  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKY 141
           AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PLK YL KY
Sbjct: 61  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKY 120

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-49
Identity = 105/130 (80.77%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 25  MADAPASP--GGGSHESGEHSPR------------SNVREQDRFLPIANISRIMKKALPA 84
           MAD P SP  GGGSHESG  SPR              VREQDRFLPIANISRIMKKA+PA
Sbjct: 1   MADGPGSPGGGGGSHESG--SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPA 60

Query: 85  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 141
           NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PL
Sbjct: 61  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL 120

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy Swiss-Prot
Match: Q67XJ2 (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-48
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 33  GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 92
           GGGSHES G+ SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 93  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
           SF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE+
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREM 119

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy Swiss-Prot
Match: Q8VYK4 (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-47
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 25  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 84
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 85  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE+
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-46
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE+
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREL 111

[Close]

BLAST of Cp4.1LG08g11300 vs. NCBI nr
Match: KAG7027991.1 (Nuclear transcription factor Y subunit B-8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (602), Expect = 6.90e-78
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. NCBI nr
Match: XP_022948121.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_022948130.1 nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_023005187.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023005188.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023540646.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo] >XP_023540647.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (602), Expect = 4.46e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. NCBI nr
Match: XP_016899739.1 (PREDICTED: nuclear transcription factor Y subunit B isoform X3 [Cucumis melo])

HSP 1 Score: 233 bits (594), Expect = 1.35e-76
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. NCBI nr
Match: XP_038906091.1 (nuclear transcription factor Y subunit B-10-like isoform X2 [Benincasa hispida])

HSP 1 Score: 233 bits (594), Expect = 5.46e-76
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. NCBI nr
Match: NP_001295779.1 (nuclear transcription factor Y subunit B-1 [Cucumis sativus] >XP_008442638.1 PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2 [Cucumis melo] >XP_011651935.1 nuclear transcription factor Y subunit B-1 isoform X2 [Cucumis sativus] >CDF47513.1 nuclear transcription factor Y subunit B-8-like [Cucumis sativus])

HSP 1 Score: 233 bits (594), Expect = 6.89e-76
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy TrEMBL
Match: A0A6J1KSG0 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498291 PE=3 SV=1)

HSP 1 Score: 236 bits (602), Expect = 2.16e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy TrEMBL
Match: A0A6J1G8V7 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451794 PE=3 SV=1)

HSP 1 Score: 236 bits (602), Expect = 2.16e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy TrEMBL
Match: A0A1S4DUT1 (nuclear transcription factor Y subunit B isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486448 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 6.53e-77
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy TrEMBL
Match: S6DEZ2 (Nuclear transcription factor Y subunit B-8-like OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 233 bits (594), Expect = 3.34e-76
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. ExPASy TrEMBL
Match: A0A1S3B658 (nuclear transcription factor Y subunit B-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486448 PE=3 SV=1)

HSP 1 Score: 233 bits (594), Expect = 3.34e-76
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MADAPASPGGGSHESGE SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 139
           CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRE 115

[Close]

BLAST of Cp4.1LG08g11300 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 194.1 bits (492), Expect = 7.6e-50
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 33  GGGSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 92
           GGGSHES G+ SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 93  SFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
           SF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE+
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREM 119

[Close]

BLAST of Cp4.1LG08g11300 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 190.7 bits (483), Expect = 8.4e-49
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 25  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 84
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 85  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE+
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

[Close]

BLAST of Cp4.1LG08g11300 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 190.7 bits (483), Expect = 8.4e-49
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 25  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 84
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 85  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE+
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

[Close]

BLAST of Cp4.1LG08g11300 vs. TAIR 10
Match: AT2G37060.3 (nuclear factor Y, subunit B8 )

HSP 1 Score: 190.7 bits (483), Expect = 8.4e-49
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 25  MADAPA-SPGG-GSHES-GEHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 84
           MA++ A SPGG GSHES G+ SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 85  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREV 141
            VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE+
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

[Close]

BLAST of Cp4.1LG08g11300 vs. TAIR 10
Match: AT2G38880.8 (nuclear factor Y, subunit B1 )

HSP 1 Score: 187.6 bits (475), Expect = 7.1e-48
Identity = 92/118 (77.97%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 25  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 84
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 85  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREVLK 143
           CVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YREV +
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFE 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g11300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25209	5.1e-51	86.18	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q60EQ4	1.3e-49	80.77	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q67XJ2	1.1e-48	88.18	Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
Q8VYK4	1.2e-47	83.33	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SLG0	2.9e-46	78.45	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Cp4.1LG08g11300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027991.1	6.90e-78	100.00	Nuclear transcription factor Y subunit B-8 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022948121.1	4.46e-77	100.00	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_0229481...	[more]
XP_016899739.1	1.35e-76	99.13	PREDICTED: nuclear transcription factor Y subunit B isoform X3 [Cucumis melo]	[more]
XP_038906091.1	5.46e-76	99.13	nuclear transcription factor Y subunit B-10-like isoform X2 [Benincasa hispida]	[more]
NP_001295779.1	6.89e-76	99.13	nuclear transcription factor Y subunit B-1 [Cucumis sativus] >XP_008442638.1 PRE...	[more]

BLAST of Cp4.1LG08g11300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSG0	2.16e-77	100.00	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G8V7	2.16e-77	100.00	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S4DUT1	6.53e-77	99.13	nuclear transcription factor Y subunit B isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
S6DEZ2	3.34e-76	99.13	Nuclear transcription factor Y subunit B-8-like OS=Cucumis sativus OX=3659 PE=2 ...	[more]
A0A1S3B658	3.34e-76	99.13	nuclear transcription factor Y subunit B-1 isoform X2 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Cp4.1LG08g11300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53340.1	7.6e-50	88.18	nuclear factor Y, subunit B10	[more]
AT2G37060.1	8.4e-49	83.33	nuclear factor Y, subunit B8	[more]
AT2G37060.2	8.4e-49	83.33	nuclear factor Y, subunit B8	[more]
AT2G37060.3	8.4e-49	83.33	nuclear factor Y, subunit B8	[more]
AT2G38880.8	7.1e-48	77.97	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 120..138 score: 40.31 coord: 101..119 score: 39.35 coord: 82..100 score: 54.07
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
None	No IPR available	PANTHER	PTHR11064:SF133	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8	coord: 25..141
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 54..118 e-value: 5.0E-28 score: 97.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 40..143 e-value: 2.6E-46 score: 158.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 51..142
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 25..141
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 85..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g11300.1	Cp4.1LG08g11300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding