Cp4.1LG08g10870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g10870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor RAX2
Location	Cp4.1LG08: 8223913 .. 8225008 (+)
RNA-Seq Expression	Cp4.1LG08g10870
Synteny	Cp4.1LG08g10870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTAATAACATCAAATCTCTCTCTCTCTCTGTTTGTGGGTTGTAAATTTAGAGAGAGAAAGATGGGAAGAACTCCATGCTGTGATAAAGCTAATGTGAAGAGAGGGCCATGGTCCCCTGAAGAAGATGCAAAGCTCAAACACTATATTCAAAAACATGGAACTGGAGGAAATTGGATCTCTCTCCCACAAAAAGCGGGTATTAATCTCTCTCTCTCTTAGTTTTTTTCATCTGGGTTTTGAAAAAGTTCGTCAAAGATTCGAACTTTATCGATCAAATTGAAGAAACATGTTCGAAATCAGTTGAATTATGCTCATGTTTGTGTTAATCACGTGTTGGGTAGGTTTGAAAAGATGTGGGAAAAGTTGTAGATTGAGGTGGCTGAATTATTTGAGACCTGATATCAAACATGGAGATTTTTCTGAGGATGAAGATCGGATAATTTACCATCTCTTTACTACCATTGGAAGCAGGTATTTTTTTGGTTATGATCTCGAACGATTAATTCAGTTATGTTTAGATTCACGCTCTGATGTCGATTTTGAACGTGTATAGGTGGTCAGTGATTGCAACACAACTACCGGGAAGAACAGACAACGACATAAAAAATTACTGGAACACGAAATTGAAGAAGAAACTAATGGGTACAAACAACATCTCGTCTCAAAACACAACCCCACATGGATTGCTTTCCCATTTTCTTCAAACTTCCTCAACAAATTCATCATCATCTTCATCACCATCTTCATACTCAGATCATAGCAACTTCCCAAGCTTCCCAAACCCTAATGGGACGTTTTCCACTTTATTAGACACCATCTCATTCTCATCCACTCTTCTAAACCCCACAAATTTGATCTCCACCTCTCAAGATCAAACCTTTATCATCAATTCAAACCGAGCTCAAAATAATTACGATGTCAAATCCGATCACGGCCTCCTCGTGTTCGGAAGGGATCAACCCAGTTGCAGCTCCTCCGACGCCGAGTACGGTAACGGAGGAGGCATCGGAGTCGAGGACGAGAAGAAGAGAATGAGCTTTGTAAAACAATTTCATGATCATGATATGTGGATGGAAGCTTCTCCATTGATGGAN

mRNA sequence

CATTAATAACATCAAATCTCTCTCTCTCTCTGTTTGTGGGTTGTAAATTTAGAGAGAGAAAGATGGGAAGAACTCCATGCTGTGATAAAGCTAATGTGAAGAGAGGGCCATGGTCCCCTGAAGAAGATGCAAAGCTCAAACACTATATTCAAAAACATGGAACTGGAGGAAATTGGATCTCTCTCCCACAAAAAGCGGATCATAGCAACTTCCCAAGCTTCCCAAACCCTAATGGGACGTTTTCCACTTTATTAGACACCATCTCATTCTCATCCACTCTTCTAAACCCCACAAATTTGATCTCCACCTCTCAAGATCAAACCTTTATCATCAATTCAAACCGAGCTCAAAATAATTACGATGTCAAATCCGATCACGGCCTCCTCGTGTTCGGAAGGGATCAACCCAGTTGCAGCTCCTCCGACGCCGAGTACGGTAACGGAGGAGGCATCGGAGTCGAGGACGAGAAGAAGAGAATGAGCTTTGTAAAACAATTTCATGATCATGATATGTGGATGGAAGCTTCTCCATTGATGGAN

Coding sequence (CDS)

ATGGGAAGAACTCCATGCTGTGATAAAGCTAATGTGAAGAGAGGGCCATGGTCCCCTGAAGAAGATGCAAAGCTCAAACACTATATTCAAAAACATGGAACTGGAGGAAATTGGATCTCTCTCCCACAAAAAGCGGATCATAGCAACTTCCCAAGCTTCCCAAACCCTAATGGGACGTTTTCCACTTTATTAGACACCATCTCATTCTCATCCACTCTTCTAAACCCCACAAATTTGATCTCCACCTCTCAAGATCAAACCTTTATCATCAATTCAAACCGAGCTCAAAATAATTACGATGTCAAATCCGATCACGGCCTCCTCGTGTTCGGAAGGGATCAACCCAGTTGCAGCTCCTCCGACGCCGAGTACGGTAACGGAGGAGGCATCGGAGTCGAGGACGAGAAGAAGAGAATGAGCTTTGTAAAACAATTTCATGATCATGATATGTGGATGGAAGCTTCTCCATTGATGGAN

Protein sequence

MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKADHSNFPSFPNPNGTFSTLLDTISFSSTLLNPTNLISTSQDQTFIINSNRAQNNYDVKSDHGLLVFGRDQPSCSSSDAEYGNGGGIGVEDEKKRMSFVKQFHDHDMWMEASPLMX

Homology

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy Swiss-Prot
Match: Q9SJL7 (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA 46
          MGR PCCDKANVKRGPWSPEEDAKLK YI+K GTGGNWI+LP KA
Sbjct: 1  MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKA 45

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK 45
          MGR PCCDKANVK+GPWSPEED KLK YI K+GTGGNWI+LPQK
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQK 44

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK 45
          MGR PCCDKANVK+GPWSPEEDAKLK YI+  GTGGNWI+LPQK
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQK 44

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKAD--------HSNFPS 60
          MGR PCCDK  VKRGPWSPEED+KL+ YI+K+G GGNWIS P KA            + +
Sbjct: 1  MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61 FPNPN---GTFSTLLDTISFS 71
          +  PN   G FS   D I FS
Sbjct: 61 YLRPNIKHGDFSEEEDRIIFS 81

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK 45
          MGR PCCDK  VK+GPWS EEDA LK YI+KHGTG NWISLPQ+
Sbjct: 1  MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQR 44

[Close]

BLAST of Cp4.1LG08g10870 vs. NCBI nr
Match: XP_023540604.1 (transcription factor RAX2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288 bits (736), Expect = 1.70e-95
Identity = 158/268 (58.96%), Postives = 158/268 (58.96%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEDEDRIIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLMGT 120

Query: 121 -----------------------------------DHSNFPSFPNPNGTFSTLLDTISFS 158
                                              DHSNFPSFPNPNGTFSTLLDTISFS
Sbjct: 121 NNISSQNTTPHGLLSHFLQTSSTNSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLDTISFS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. NCBI nr
Match: KAG7028034.1 (Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269 bits (688), Expect = 4.05e-88
Identity = 151/274 (55.11%), Postives = 155/274 (56.57%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEED+KLKHYIQKHGTGGNWISLPQKA               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDSKLKHYIQKHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEDEDRIIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLIGT 120

Query: 121 -------------------------------------DHSNFPSFPNPNGTFSTLLDTIS 158
                                                DHSNFPSFPNPNGTFSTLLDTIS
Sbjct: 121 NNISSQNTTPHGLLSHFLQISSTNSSSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLDTIS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. NCBI nr
Match: XP_022927921.1 (transcription factor RAX2 [Cucurbita moschata])

HSP 1 Score: 267 bits (683), Expect = 2.32e-87
Identity = 150/274 (54.74%), Postives = 155/274 (56.57%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEDEDRIIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLIGT 120

Query: 121 -------------------------------------DHSNFPSFPNPNGTFSTLLDTIS 158
                                                DHSNFPSFPNPNGTFSTLLDTIS
Sbjct: 121 NNVSSQNTTPHGLLSHFLQISSTNSSSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLDTIS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. NCBI nr
Match: KAG6596486.1 (Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (680), Expect = 6.63e-87
Identity = 149/274 (54.38%), Postives = 155/274 (56.57%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEED+KLKHYIQKHGTGGNWISLPQKA               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDSKLKHYIQKHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEDEDRIIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLIGT 120

Query: 121 -------------------------------------DHSNFPSFPNPNGTFSTLLDTIS 158
                                                DHSNFPSFPNPNGTFSTLLDTIS
Sbjct: 121 NNISSQNTTPHGLLSHFLQISSTNSSSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLDTIS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. NCBI nr
Match: XP_023005948.1 (transcription factor RAX2 [Cucurbita maxima])

HSP 1 Score: 252 bits (644), Expect = 1.75e-81
Identity = 144/272 (52.94%), Postives = 151/272 (55.51%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK+               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKSGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEEEDRVIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLMST 120

Query: 121 -----------------------------------DHSNFPSFPNPNGTFSTLLDTISFS 158
                                              DHSNFPSFPNPNGTFSTLL+ ISFS
Sbjct: 121 NNISSQKTTPHGLLSHFLQTSSTNSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLEPISFS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy TrEMBL
Match: A0A6J1EIV2 (transcription factor RAX2 OS=Cucurbita moschata OX=3662 GN=LOC111434647 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.13e-87
Identity = 150/274 (54.74%), Postives = 155/274 (56.57%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEDEDRIIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLIGT 120

Query: 121 -------------------------------------DHSNFPSFPNPNGTFSTLLDTIS 158
                                                DHSNFPSFPNPNGTFSTLLDTIS
Sbjct: 121 NNVSSQNTTPHGLLSHFLQISSTNSSSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLDTIS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy TrEMBL
Match: A0A6J1L3K4 (transcription factor RAX2 OS=Cucurbita maxima OX=3661 GN=LOC111498805 PE=4 SV=1)

HSP 1 Score: 252 bits (644), Expect = 8.49e-82
Identity = 144/272 (52.94%), Postives = 151/272 (55.51%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA--------------- 60
           MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK+               
Sbjct: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKSGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEEEDRVIYHLFTTIGSRWSVIATQLPGRTDNDIKNYWNTKLKKKLMST 120

Query: 121 -----------------------------------DHSNFPSFPNPNGTFSTLLDTISFS 158
                                              DHSNFPSFPNPNGTFSTLL+ ISFS
Sbjct: 121 NNISSQKTTPHGLLSHFLQTSSTNSSSSSSPSSYSDHSNFPSFPNPNGTFSTLLEPISFS 180

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy TrEMBL
Match: A0A1S4DUG6 (transcription factor RAX2 OS=Cucumis melo OX=3656 GN=LOC103486500 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 4.64e-36
Identity = 106/280 (37.86%), Postives = 120/280 (42.86%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKAD-------------- 60
           MGRTPCCDKANVK+GPWSPEEDAKLK YIQKHGTGGNWISLPQKA               
Sbjct: 1   MGRTPCCDKANVKKGPWSPEEDAKLKDYIQKHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKHGDFSEEEDTIICNLYTTIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLTSL 120

Query: 121 HSNFPSFPNPNGT------------------FSTLLDTISFSSTLL-NPTNLIST----- 151
           H   P F  P+ T                   STLL+ ISFSS LL NPT   +T     
Sbjct: 121 HGMVPQFIQPSSTNSSSSSSSPSSYSNNGPLISTLLEPISFSSNLLLNPTTTTTTNNNPN 180

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy TrEMBL
Match: A0A7J0EC00 (Duplicated homeodomain-like superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_03g0007670 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.64e-29
Identity = 64/126 (50.79%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 1   MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKADHSNFPSFPNPNGTF 60
           MG+ PCCDKANVKRGPWSPEEDAKLK YI+KHGTGGNWI+LPQKA +             
Sbjct: 1   MGKAPCCDKANVKRGPWSPEEDAKLKDYIEKHGTGGNWIALPQKAGY------------- 60

Query: 61  STLLDTISFSSTLLNPTNLISTSQDQTFIINSNRAQNNYDVKSDHGLLVFGRDQPSCSSS 120
               + IS  S LLN ++ I  SQ+           + Y VK  + +L+FG DQ SCSSS
Sbjct: 61  ----EPISIPSNLLNCSSNICGSQEGYV-----GPMHQYQVKESN-ILMFGGDQGSCSSS 103

Query: 121 DAEYGN 126
           D    N
Sbjct: 121 DGSCSN 103

[Close]

BLAST of Cp4.1LG08g10870 vs. ExPASy TrEMBL
Match: A0A0A0LB23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740800 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 2.26e-25
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA 45
          MGRTPCCDKANVK+GPWSPEEDAKLK YIQKHGTGGNWISLPQKA
Sbjct: 1  MGRTPCCDKANVKKGPWSPEEDAKLKDYIQKHGTGGNWISLPQKA 45

[Close]

BLAST of Cp4.1LG08g10870 vs. TAIR 10
Match: AT2G36890.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-19
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKA 46
          MGR PCCDKANVKRGPWSPEEDAKLK YI+K GTGGNWI+LP KA
Sbjct: 1  MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKA 45

[Close]

BLAST of Cp4.1LG08g10870 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-19
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK 45
          MGR PCCDKANVK+GPWSPEED KLK YI K+GTGGNWI+LPQK
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQK 44

[Close]

BLAST of Cp4.1LG08g10870 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK 45
          MGR PCCDKANVK+GPWSPEEDAKLK YI+  GTGGNWI+LPQK
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQK 44

[Close]

BLAST of Cp4.1LG08g10870 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQK 45
          MGR PCCDKANVK+GPWSPEEDAKLK YI+  GTGGNWI+LPQK
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQK 44

[Close]

BLAST of Cp4.1LG08g10870 vs. TAIR 10
Match: AT5G23000.1 (myb domain protein 37 )

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-16
Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1  MGRTPCCDKANVKRGPWSPEEDAKLKHYIQKHGTGGNWISLPQKAD--------HSNFPS 60
          MGR PCCDK  VKRGPWSPEED+KL+ YI+K+G GGNWIS P KA            + +
Sbjct: 1  MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61 FPNPN---GTFSTLLDTISFS 71
          +  PN   G FS   D I FS
Sbjct: 61 YLRPNIKHGDFSEEEDRIIFS 81

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g10870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJL7	1.7e-18	86.67	Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1	[more]
Q9FKL2	1.1e-17	84.09	Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1	[more]
Q9M2Y9	1.8e-17	84.09	Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1	[more]
Q9FG68	1.7e-15	53.09	Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1	[more]
F4JSU0	3.8e-15	77.27	Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1	[more]

BLAST of Cp4.1LG08g10870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540604.1	1.70e-95	58.96	transcription factor RAX2 [Cucurbita pepo subsp. pepo]	[more]
KAG7028034.1	4.05e-88	55.11	Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927921.1	2.32e-87	54.74	transcription factor RAX2 [Cucurbita moschata]	[more]
KAG6596486.1	6.63e-87	54.38	Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023005948.1	1.75e-81	52.94	transcription factor RAX2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g10870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIV2	1.13e-87	54.74	transcription factor RAX2 OS=Cucurbita moschata OX=3662 GN=LOC111434647 PE=4 SV=...	[more]
A0A6J1L3K4	8.49e-82	52.94	transcription factor RAX2 OS=Cucurbita maxima OX=3661 GN=LOC111498805 PE=4 SV=1	[more]
A0A1S4DUG6	4.64e-36	37.86	transcription factor RAX2 OS=Cucumis melo OX=3656 GN=LOC103486500 PE=4 SV=1	[more]
A0A7J0EC00	2.64e-29	50.79	Duplicated homeodomain-like superfamily protein OS=Actinidia rufa OX=165716 GN=A...	[more]
A0A0A0LB23	2.26e-25	95.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740800 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g10870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36890.1	1.2e-19	86.67	Duplicated homeodomain-like superfamily protein	[more]
AT5G57620.1	7.7e-19	84.09	myb domain protein 36	[more]
AT3G49690.1	1.3e-18	84.09	myb domain protein 84	[more]
AT5G65790.1	1.3e-18	84.09	myb domain protein 68	[more]
AT5G23000.1	1.2e-16	53.09	myb domain protein 37	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..40 e-value: 9.5E-6 score: 25.7
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..35 score: 10.596346
None	No IPR available	GENE3D	1.10.10.60		coord: 7..57 e-value: 2.5E-8 score: 35.6
None	No IPR available	PANTHER	PTHR48000	OS09G0431300 PROTEIN	coord: 1..46
None	No IPR available	PANTHER	PTHR48000:SF7	TRANSCRIPTION FACTOR RAX1	coord: 1..46
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..44 score: 6.794662
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..38 e-value: 8.84551E-5 score: 36.3994
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 8..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g10870.1	Cp4.1LG08g10870.1	mRNA