Cp4.1LG08g10270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g10270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCytochrome b-c1 complex subunit 9-like
LocationCp4.1LG08: 7816016 .. 7818802 (-)
RNA-Seq ExpressionCp4.1LG08g10270
SyntenyCp4.1LG08g10270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATAAAATTTATAAGTATTTATTAGAAAATTAATTTGGTTCAAGAAAAACATTTTTTTTAGGAGGTCGGAGTATTCTACTAAACCGAAGCGGTTCAACAAGACCGATAACGGTTCTCTAGAAATTCAAACCGGTCCATTGCAGTCAAGTTCCTTACAGTTCGTCTTCGAGAAATCAAGCAACTCCATTCCCATCTTCTCTCAACCAAAGGCGCGAGAAGTTTTTGCTAACCCTAACGCTTAGATCAGAAGGCAAAGAACTCGCGAGAACATCGAGAATGAATTCGGCAGGTCCAAGAAGCAGAGGCCTTTTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTTACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGTAATGTTGTTTACCTCATCTTTATGCTAATTTATGTCTGTTATGTTTCTTTTTTGGATTGTCAATTAATTAATTTCGTTTCCGCGTTTGATCTGAGGATCTAGTTTTTTTGCAAATTACTAAATATTGGTATTAAACTGCCTGATTGACTGGTCATTTCTCGCTGATCCATGAAAAAAATTCAACGAACAGCTTGTTCATGTGTGACCGCCGGCTAGAAGAAGTAGGTGGAACTGTATTGAAATTTATGGTTTATCTGCACAAGGAGAATTGATTAGGAGTAGAGGATTCATATATTGGTTTCTGGCATCAATTGAAAAGTACGGTTACATGATTGAACTGATTCAAAATATTACTATGAATTGCTTTCACGATTGTGTGCAGATTCTTAATTTATGTAAAGTAACTTAGTATGTTTTCTTCATGTATGGAAATGCGGAATTCGGCCATTATTTAGTCTGCTTACAATAGAAAAGGACTTCCATTTATTTATTTATTTAAATTTTACACGATAATGAAANAAAAAAAAAAAAAAAAAAAAAAAAAAACATAAGGACGTTTCTTCGTTTGTTCTATGCACTGTTATGTAATGGGCCTGAGCATCTTAAATTGTAGTGTGGGACTTATGAGTTGCTTGGTTTTGTGTTGTTACTTTAAGTTTATGGTATCTTATTTTTACCTTAATGCCTGGATTTCCATTGGTGCAGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACCTACCCACATGCATGATTTACTTTGTTTTTTTATGTACACATTCACATAGACTATCATTTTGGCTTTTATTGTGTTCTCCAAATCCGGAATGCTTGATTTTTTATTCTGGATGTTTTGGCTCCCATTTTCTGTTATCAGCTTCAAATTATCGATCAGTTTCAGCTTCTATTTGTGGTTATTGTGTTGAAGATTATGGCATTGCAGAACCCTTGCATTTTCATGATCTCTTCTATTTCATCATCTGGTTTAAAATGACTTCCAGGTGTAATGCATCAAGATGCATATGAAATTCTCATATTTTTTTGAACACAAGCAAGCTATTTGGACTTGTCGTTCAAATGCCATTCATCATTCGGTACAGATTGAATTTGAAAATGACAATAAAGTAGTACTTATTTCAGATTTCATCTGTTGTGTTTTCGTTCTTCCTTATTTTTTAAAATCGTTCTTTGTGTTCTTAAGTTTTGGAAGGTCTTAATTTCTACAAGGTTAAGGCTGTATTAGAATTTTCGTGGGATAATTATAAACCACACCTACGCAGTCTGTCTATTCAATGTCCTCATGGTTCAAAAACAATTTTTTTTATAAGCACTTAGGCTTTTGATTGCTGCTTTTTACTTGTTTCTTAAGTGGGTTGGTTCCTTTTACTTGTATGTTAAGTGAGCTGTCAGTAATGAATAACGCGAGTCACTAAAAACATTTTCCCAAGTTGGTTTGAATCTAAAAGGTCTTAATGGAGCCAACCTAAGCATAATTCAAATGGTTAAGGTATTATATCCTTAGATGTTAGAATCCTCACTCCCACATGTTGTTGAACTAAAAAAAAGTCTGAAATGGAACGTCTATTTTTTCCATGACGGCCATTAAGGTTGCTGCTAGTTGGTGAAGAAGGGCTGTTAGAGTTACCACACACACTGGCAAAGTAGATAGTATTTGCAATCATCGCTATTTTATTTGTTTTTTTTTTTTTTTTTCCTCCTATTATATGTTGATCTATAATATCCATCCTTCTATTACAATCTTGCTTGCACAAGATGCTACTAAACAATTTTTGTATTGATTAATAGCTTTCATAACTCATTCCCAACTCTATTTCGATATATGATGGTGTGCAGAAACGGTATGAGGACATTTCAGTTTTGGGGCAGAGACCATCGGAAGAATGAATTTATTAGCCGCTTGAAAGCTACACATTCATGGATTGAAGAGGTAAAAACTGGTGGCTTAGGATGATAAATGAGAATATATTTCCAATGGGGAAAACGTTGTCTTTTTGACATGGAACATTTGTGTTTCTTCATGAGATTCTAATCATATTTTATTTGCTTGAGATCGGAGTTACAAGCTTTTGTGCATTATATTTGATCATCGAGAAAAGAGGATCTGGGATATTGGGATTTTAGCAGTGGCATAGTTGCAATGACTTCGGTTCTAGTTTATGAATAGAGGGAGTTAGATAACTCAGATGATTGAAAGAATTTTGGCAAATTAGTCCTTTGTGGGTTAAGATTTAAACCTTCGATCTAAAAGCGAGTACATGTCAATTACAACAATGATCAATTTGGTAGAATGAGAAACTATAACAATTTATGCATTTGATTCTCTTTTTTAAGTATAAGCTTGAGAAT

mRNA sequence

TAATAAAATTTATAAGTATTTATTAGAAAATTAATTTGGTTCAAGAAAAACATTTTTTTTAGGAGGTCGGAGTATTCTACTAAACCGAAGCGGTTCAACAAGACCGATAACGGTTCTCTAGAAATTCAAACCGGTCCATTGCAGTCAAGTTCCTTACAGTTCGTCTTCGAGAAATCAAGCAACTCCATTCCCATCTTCTCTCAACCAAAGGCGCGAGAAGTTTTTGCTAACCCTAACGCTTAGATCAGAAGGCAAAGAACTCGCGAGAACATCGAGAATGAATTCGGCAGGTCCAAGAAGCAGAGGCCTTTTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTTACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGTTTTGGGGCAGAGACCATCGGAAGAATGAATTTATTAGCCGCTTGAAAGCTACACATTCATGGATTGAAGAGTATAAGCTTGAGAAT

Coding sequence (CDS)

ATGAATTCGGCAGGTCCAAGAAGCAGAGGCCTTTTCGAAGGTCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTTACCTTCATCATCGCCGGTGCTTTCGTCGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGTTTTGGGGCAGAGACCATCGGAAGAATGAATTTATTAGCCGCTTGAAAGCTACACATTCATGGATTGAAGAGTATAAGCTTGAGAAT

Protein sequence

MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGFWGRDHRKNEFISRLKATHSWIEEYKLEN
Homology
[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-17
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 3  SAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          +A    +G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 4  AARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.5e-14
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 1  MNSAGPRS-RGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          M SA  RS  G+ EG YR++MRR  VYVTF+IAGA +GERAVDYGV  LWE NNVG
Sbjct: 1  MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56

[Close]
BLAST of Cp4.1LG08g10270 vs. NCBI nr
Match: KAA0043883.1 (cytochrome b-c1 complex subunit 9-like [Cucumis melo var. makuwa] >TYK25254.1 cytochrome b-c1 complex subunit 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.48e-35
Identity = 68/106 (64.15%), Postives = 71/106 (66.98%), Query Frame = 0 

Query: 1   MNSAGPRSRG-LFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG---- 60
           MNSAG RS G L EG YRVIMRRNSVYVTFIIAGAFVGERAVDYGV KLWEYNNVG    
Sbjct: 1   MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAVDYGVQKLWEYNNVGGLGA 60

Query: 61  --------------------FWGRDHRKNEFISRLKATHSWIEEYK 81
                               FWG+D  KNEF+S LKAT SWI+E K
Sbjct: 61  GPVGVAGRAPPPRNGTRTFQFWGKDQWKNEFVSHLKATQSWIQEVK 106

[Close]
BLAST of Cp4.1LG08g10270 vs. NCBI nr
Match: XP_023538974.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 1.98e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Cp4.1LG08g10270 vs. NCBI nr
Match: XP_022927398.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita moschata])

HSP 1 Score: 117 bits (293), Expect = 1.98e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Cp4.1LG08g10270 vs. NCBI nr
Match: XP_023005921.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita maxima])

HSP 1 Score: 112 bits (280), Expect = 1.91e-30
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSA PRS GLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Cp4.1LG08g10270 vs. NCBI nr
Match: KAG7028107.1 (hypothetical protein SDJN02_09287, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (280), Expect = 3.56e-30
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSA PRS GLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy TrEMBL
Match: A0A5D3DNU0 (Cytochrome b-c1 complex subunit 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003870 PE=3 SV=1)

HSP 1 Score: 126 bits (317), Expect = 7.17e-36
Identity = 68/106 (64.15%), Postives = 71/106 (66.98%), Query Frame = 0 

Query: 1   MNSAGPRSRG-LFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG---- 60
           MNSAG RS G L EG YRVIMRRNSVYVTFIIAGAFVGERAVDYGV KLWEYNNVG    
Sbjct: 1   MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAVDYGVQKLWEYNNVGGLGA 60

Query: 61  --------------------FWGRDHRKNEFISRLKATHSWIEEYK 81
                               FWG+D  KNEF+S LKAT SWI+E K
Sbjct: 61  GPVGVAGRAPPPRNGTRTFQFWGKDQWKNEFVSHLKATQSWIQEVK 106

[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy TrEMBL
Match: A0A6J1EKW3 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111434207 PE=3 SV=1)

HSP 1 Score: 117 bits (293), Expect = 9.60e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy TrEMBL
Match: A0A6J1KWC9 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111498782 PE=3 SV=1)

HSP 1 Score: 112 bits (280), Expect = 9.23e-31
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MNSAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSA PRS GLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAAPRSGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55

[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy TrEMBL
Match: A0A6N2L5N0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS180445 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 3.35e-28
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 0 

Query: 1  MNSAGPRSRG-LFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGFWGR 60
          M+S   RS G +FEG+Y++IMRRNS+YVTF+IAGAF GERAVDYGV KLWE+NNVG WG+
Sbjct: 1  MDSTPRRSGGGMFEGIYKLIMRRNSIYVTFVIAGAFAGERAVDYGVRKLWEHNNVGVWGK 60

Query: 61 DHRKNEFIS 68
            +KNEF+S
Sbjct: 61 GQQKNEFLS 69

[Close]
BLAST of Cp4.1LG08g10270 vs. ExPASy TrEMBL
Match: A0A6J1J703 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481802 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 5.27e-28
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1  MNSAGPRSRG-LFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 55
          MNSAG RS G LFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of Cp4.1LG08g10270 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-18
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 3  SAGPRSRGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 56
          +A    +G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 4  AARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g10270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXJ22.8e-1777.36Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
P462708.5e-1467.86Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
BLAST of Cp4.1LG08g10270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043883.11.48e-3564.15cytochrome b-c1 complex subunit 9-like [Cucumis melo var. makuwa] >TYK25254.1 cy... [more]
XP_023538974.11.98e-32100.00cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo][more]
XP_022927398.11.98e-32100.00cytochrome b-c1 complex subunit 9-like [Cucurbita moschata][more]
XP_023005921.11.91e-3096.36cytochrome b-c1 complex subunit 9-like [Cucurbita maxima][more]
KAG7028107.13.56e-3096.36hypothetical protein SDJN02_09287, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG08g10270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DNU07.17e-3664.15Cytochrome b-c1 complex subunit 9-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1EKW39.60e-33100.00cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
A0A6J1KWC99.23e-3196.36cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114987... [more]
A0A6N2L5N03.35e-2869.57Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS180445 PE=3 SV=... [more]
A0A6J1J7035.27e-2892.86cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114818... [more]
BLAST of Cp4.1LG08g10270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52730.12.0e-1877.36ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyGENE3D1.20.5.260coord: 8..60
e-value: 1.2E-21
score: 78.1
IPR036656Cytochrome b-c1 complex subunit 9 superfamilySUPERFAMILY81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..55
IPR008027Cytochrome b-c1 complex subunit 9PFAMPF05365UCR_UQCRX_QCR9coord: 14..55
e-value: 1.9E-17
score: 62.9
IPR008027Cytochrome b-c1 complex subunit 9PANTHERPTHR12980UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT Xcoord: 6..55
NoneNo IPR availablePANTHERPTHR12980:SF3CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKEcoord: 6..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g10270.1Cp4.1LG08g10270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III