Cp4.1LG08g10120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g10120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG08: 7757576 .. 7759529 (-)
RNA-Seq ExpressionCp4.1LG08g10120
SyntenyCp4.1LG08g10120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGGGAGCTTGTTCGTTGTGGGATGCCATTGGATAACTATACATTGCCAATTGTTATAAGGGCCTGCAGAGATTTGAAGGACCTGCAATTTGGTAGAGTTATTCATTGTGCCACTTCGAAATGTGGGCTGGATTTTGATCATTTTGTTTGTGCATCTCTTGTTGATATGTATGCTAGGTGTAAAGTGATCGAGGATGCCCGCCAACTGTTTGATAAAATGCCAAGGAGAGATCTTGTGACATGGACAGTGATGGTTGGTGCCTTGGCTGAATGCAGCAGTGCTGTTGAGTCATTGACTTTGTTTGATAGGATGAGGGATGAAGGTATTGTCCCTGATAAAGTGGCGTTGGTGACTGTTGTTTATGCCTGCGCAAAGTTGGGCGCCATGAATAAGGCCAGGGCAATTCATGACTATATTAATGGAACCAGATATGTTTTGGATGTAATTTTAGGGACAGCAATGATCGATATGTATGCGAAATGTGGGAGTGTTGATTTGGCAAGGGAGATTTTTGATCAGATGCAAGTGAAGAATGTGATTACATGGAGTGCCATGATTGCAGCCTATGGATATCACGGACAAGGTGGGAAAGCGCTCGAGTTATTCCCGATGATGTTAAGCAGCGGAATATTGCCAAATCGGATCACTTTTGTCTCGTTGTTGTATGCTTGTAGTCATGCTGGTCTAATTGAAGAGGGCCAGAGATTTTTTGCCTCAATGTGGGATGAGTACGGTGTAAGACCAGATGTAAAACACTATACTTGCATGGTTGATCTCCTAGGTCGAGCCGGGAGATTCGATGAGGCCTTGGGATTGATAGAAAGCATGACAGTAGAGAAAGATGAAGGACTATGGGGAGCGTTGCTGGGGGCATGTCGGATTCACCGACGTTTAGATTTGGCGAAAAGGGTGGCAAACTCTCTTCTTGAGATACAGCCGCAGAACCCAGGGCATTATGTATTGCTTTCAAACATATATGCAAATGCTGGTAAGTGGGAAGATATGGCAAAAACAAGAGATTTGATGACCAAATGTGGACTAAAGAAGATCCCTGGATGGACATGGATTGAGGTGGATGAAAAACTCTATCAATTCAGTGTTGGAGATAAAACACATCCGAGGTCGAGCGAGATCTATGAGATGCTGAAACGAGTGGGCGAGAAGCTCGAGTTGGCTGGCTATGTCCCGGATACAAACTATGTGCTGCATGATGTTGATGAGGAAGTAAAGCAAGGACTTCTATATGCACATAGTGAAAAGTTGGCCATTGCGTTTGGCTTAATAGTCATACCTGGAGACACTCCTATAAGGATTACAAAGAATCTTAGAGTTTGTGGTGACTGCCATACATTTTGCAAGTTTGTATCGTCGATTGAACGGAGAACGATCATACTACGTGACGCCAACCGGTTTCACCACTTCAAGGAAGGGGCTTGCTCATGCAGAGACTATTGGTAATTGATTGTTTCTACCTCGTCCAAGCTGAAGGTTAGTTCATTCTCTTGTTCTTTATTTGATTGGATTTCTGCCTTGAACATTAAATCTAAGTCGAAATCTGACCAATAGTTGGTTCCTTAAGATAATTCGTTCTTTCCACAATGTTAAGGAGTACTCGGACAATTGTCTTCTAGTATAAGATGAGTTGATTAATTAGGAAGATCATGGATTTATAAGTAAGGAACACTATCCATTGGTACGTTCTCTTTTGGTTTTTAAAACCAAAAGTAAAGTCGCGAGAGCTTGTGCTCAAAGTGGACAATATCATACCATTGTGGAGTGTCGTGGTTCCTAGCAAGATGGGCTTTCCAAACCTTTTGATTGGATAGTTTTCTTTGAAGTGGTTCGTAAACACAGTGGGATAACCAATCCTTTCATCTATGGATAGAATTTTGTCATCATTTTGTTGAAAACGGCAGAAATGGTTTCAACTAGTATTGAAACTACTTGA

mRNA sequence

ATGTTTAGGGAGCTTGTTCGTTGTGGGATGCCATTGGATAACTATACATTGCCAATTGTTATAAGGGCCTGCAGAGATTTGAAGGACCTGCAATTTGGTAGAGTTATTCATTGTGCCACTTCGAAATGTGGGCTGGATTTTGATCATTTTGTTTGTGCATCTCTTGTTGATATGTATGCTAGGTGTAAAGTGATCGAGGATGCCCGCCAACTGTTTGATAAAATGCCAAGGAGAGATCTTGTGACATGGACAGTGATGGTTGGTGCCTTGGCTGAATGCAGCAGTGCTGTTGAGTCATTGACTTTGTTTGATAGGATGAGGGATGAAGAAATGGTTTCAACTAGTATTGAAACTACTTGA

Coding sequence (CDS)

ATGTTTAGGGAGCTTGTTCGTTGTGGGATGCCATTGGATAACTATACATTGCCAATTGTTATAAGGGCCTGCAGAGATTTGAAGGACCTGCAATTTGGTAGAGTTATTCATTGTGCCACTTCGAAATGTGGGCTGGATTTTGATCATTTTGTTTGTGCATCTCTTGTTGATATGTATGCTAGGTGTAAAGTGATCGAGGATGCCCGCCAACTGTTTGATAAAATGCCAAGGAGAGATCTTGTGACATGGACAGTGATGGTTGGTGCCTTGGCTGAATGCAGCAGTGCTGTTGAGTCATTGACTTTGTTTGATAGGATGAGGGATGAAGAAATGGTTTCAACTAGTATTGAAACTACTTGA

Protein sequence

MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMVSTSIETT
Homology
[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy Swiss-Prot
Match: Q9CA56 (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           +F E+       D+YT   V+ AC  L+ L+FG+V+     KCG + D FVC ++VD+YA
Sbjct: 238 LFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYA 297

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMR 108
           +C  + +A ++F ++P   +V+WTVM+    + + A  +L +F  MR
Sbjct: 298 KCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMR 343

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 0 

Query: 2   FRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYAR 61
           +R ++   +   NYT   VI++C DL  L+ G+ +HC     G   D +V A+LV  Y++
Sbjct: 95  YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154

Query: 62  CKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRD 109
           C  +E ARQ+FD+MP + +V W  +V    +   A E++ +F +MR+
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 201

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy Swiss-Prot
Match: P0C8Q7 (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 37/115 (32.17%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           ++ +++R G+  D+ T P ++++   L + + G  +HC+  K GL++D F+C +L+ MY 
Sbjct: 95  VYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYG 154

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMVSTS 116
             +    AR+LFD+MP ++LVTW  ++ A A+    V +  +FD M + ++V+ S
Sbjct: 155 SFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWS 209

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy Swiss-Prot
Match: Q9LTF4 (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 13  DNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLF 72
           D++ LP   ++C  L     GR +HC + K G D D FV +SLVDMYA+C  I  AR++F
Sbjct: 115 DDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMF 174

Query: 73  DKMPRRDLVTWTVMVGALAECSSAVESLTLF 104
           D+MP+R++VTW+ M+   A+     E+L LF
Sbjct: 175 DEMPQRNVVTWSGMMYGYAQMGENEEALWLF 205

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy Swiss-Prot
Match: Q9FGR2 (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-15
Identity = 45/138 (32.61%), Postives = 74/138 (53.62%), Query Frame = 0 

Query: 2   FRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYAR 61
           FRE+ + G+ LD + +P +++A R+L D +FG++IHC   K   + D F+ +SL+DMY++
Sbjct: 105 FREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSK 164

Query: 62  CKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTL------------------- 118
              + +AR++F  +  +DLV +  M+   A  S A E+L L                   
Sbjct: 165 FGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNAL 224

[Close]
BLAST of Cp4.1LG08g10120 vs. NCBI nr
Match: XP_022938851.1 (pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 230 bits (587), Expect = 6.14e-71
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 28  MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 87

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 88  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 139

[Close]
BLAST of Cp4.1LG08g10120 vs. NCBI nr
Match: XP_023540821.1 (pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230 bits (587), Expect = 6.14e-71
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 28  MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 87

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 88  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 139

[Close]
BLAST of Cp4.1LG08g10120 vs. NCBI nr
Match: KAG6596581.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230 bits (587), Expect = 7.82e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 147 MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 206

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 207 RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 258

[Close]
BLAST of Cp4.1LG08g10120 vs. NCBI nr
Match: XP_022938843.1 (pentatricopeptide repeat-containing protein At2g33760-like isoform X1 [Cucurbita moschata] >KAG7028119.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230 bits (587), Expect = 7.82e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 147 MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 206

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 207 RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 258

[Close]
BLAST of Cp4.1LG08g10120 vs. NCBI nr
Match: XP_023540820.1 (pentatricopeptide repeat-containing protein At2g33760-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230 bits (587), Expect = 7.82e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 147 MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 206

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 207 RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 258

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy TrEMBL
Match: A0A6J1FEA7 (pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444929 PE=3 SV=1)

HSP 1 Score: 230 bits (587), Expect = 2.97e-71
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 28  MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 87

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 88  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 139

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy TrEMBL
Match: A0A6J1FK20 (pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444929 PE=3 SV=1)

HSP 1 Score: 230 bits (587), Expect = 3.78e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 147 MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 206

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE +V
Sbjct: 207 RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIV 258

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy TrEMBL
Match: A0A6J1KWE2 (pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498794 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 6.55e-70
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 28  MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 87

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMR E +V
Sbjct: 88  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRVEGIV 139

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy TrEMBL
Match: A0A6J1KYT5 (pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498794 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 8.02e-69
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA
Sbjct: 147 MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 206

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMR E +V
Sbjct: 207 RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRVEGIV 258

[Close]
BLAST of Cp4.1LG08g10120 vs. ExPASy TrEMBL
Match: A0A6J1CTP5 (pentatricopeptide repeat-containing protein At2g33760-like OS=Momordica charantia OX=3673 GN=LOC111014240 PE=3 SV=1)

HSP 1 Score: 210 bits (534), Expect = 2.35e-62
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           MFREL RCGMP DNYTLPIVIRACRDLKDLQFGR+IHCAT KCGLD+DHFVCASLVDMY+
Sbjct: 148 MFRELFRCGMPFDNYTLPIVIRACRDLKDLQFGRLIHCATLKCGLDYDHFVCASLVDMYS 207

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMV 112
           RC+VI+DARQLFDKM +RDLVTWTVM+GALAECSSA ESL LFDRMRDE +V
Sbjct: 208 RCRVIDDARQLFDKMHKRDLVTWTVMIGALAECSSAFESLVLFDRMRDEGIV 259

[Close]
BLAST of Cp4.1LG08g10120 vs. TAIR 10
Match: AT1G74600.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-17
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           +F E+       D+YT   V+ AC  L+ L+FG+V+     KCG + D FVC ++VD+YA
Sbjct: 238 LFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYA 297

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMR 108
           +C  + +A ++F ++P   +V+WTVM+    + + A  +L +F  MR
Sbjct: 298 KCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMR 343

[Close]
BLAST of Cp4.1LG08g10120 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-17
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 0 

Query: 2   FRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYAR 61
           +R ++   +   NYT   VI++C DL  L+ G+ +HC     G   D +V A+LV  Y++
Sbjct: 95  YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154

Query: 62  CKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRD 109
           C  +E ARQ+FD+MP + +V W  +V    +   A E++ +F +MR+
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 201

[Close]
BLAST of Cp4.1LG08g10120 vs. TAIR 10
Match: AT5G52630.1 (mitochondrial RNAediting factor 1 )

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-17
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 13  DNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLF 72
           D++ LP   ++C  L     GR +HC + K G D D FV +SLVDMYA+C  I  AR++F
Sbjct: 115 DDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMF 174

Query: 73  DKMPRRDLVTWTVMVGALAECSSAVESLTLF 104
           D+MP+R++VTW+ M+   A+     E+L LF
Sbjct: 175 DEMPQRNVVTWSGMMYGYAQMGENEEALWLF 205

[Close]
BLAST of Cp4.1LG08g10120 vs. TAIR 10
Match: AT5G08305.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.2e-17
Identity = 37/115 (32.17%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 1   MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYA 60
           ++ +++R G+  D+ T P ++++   L + + G  +HC+  K GL++D F+C +L+ MY 
Sbjct: 95  VYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYG 154

Query: 61  RCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEEMVSTS 116
             +    AR+LFD+MP ++LVTW  ++ A A+    V +  +FD M + ++V+ S
Sbjct: 155 SFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWS 209

[Close]
BLAST of Cp4.1LG08g10120 vs. TAIR 10
Match: AT5G59600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 45/138 (32.61%), Postives = 74/138 (53.62%), Query Frame = 0 

Query: 2   FRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYAR 61
           FRE+ + G+ LD + +P +++A R+L D +FG++IHC   K   + D F+ +SL+DMY++
Sbjct: 105 FREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSK 164

Query: 62  CKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTL------------------- 118
              + +AR++F  +  +DLV +  M+   A  S A E+L L                   
Sbjct: 165 FGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNAL 224

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g10120 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CA561.3e-1535.51Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidop... [more]
P930111.3e-1534.58Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
P0C8Q71.3e-1532.17Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana OX... [more]
Q9LTF41.3e-1543.96Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis th... [more]
Q9FGR22.2e-1532.61Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG08g10120 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938851.16.14e-7198.21pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isofor... [more]
XP_023540821.16.14e-7198.21pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isofor... [more]
KAG6596581.17.82e-7098.21Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022938843.17.82e-7098.21pentatricopeptide repeat-containing protein At2g33760-like isoform X1 [Cucurbita... [more]
XP_023540820.17.82e-7098.21pentatricopeptide repeat-containing protein At2g33760-like isoform X1 [Cucurbita... [more]
BLAST of Cp4.1LG08g10120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FEA72.97e-7198.21pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isofor... [more]
A0A6J1FK203.78e-7098.21pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbi... [more]
A0A6J1KWE26.55e-7097.32pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isofor... [more]
A0A6J1KYT58.02e-6997.32pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbi... [more]
A0A6J1CTP52.35e-6286.61pentatricopeptide repeat-containing protein At2g33760-like OS=Momordica charanti... [more]
BLAST of Cp4.1LG08g10120 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74600.19.2e-1735.51pentatricopeptide (PPR) repeat-containing protein [more]
AT2G33760.19.2e-1734.58Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G52630.19.2e-1743.96mitochondrial RNAediting factor 1 [more]
AT5G08305.19.2e-1732.17Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G59600.11.6e-1632.61Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 81..109
e-value: 0.002
score: 18.2
coord: 54..79
e-value: 0.0032
score: 17.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 81..112
e-value: 0.0014
score: 16.6
coord: 51..80
e-value: 5.2E-5
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 48..82
score: 9.591195
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..118
e-value: 6.0E-21
score: 77.1
NoneNo IPR availablePANTHERPTHR47928:SF52TRANSCRIPT PROCESSING PROTEIN, PUTATIVE-RELATEDcoord: 1..115
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g10120.1Cp4.1LG08g10120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding