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Cp4.1LG08g09440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGCAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACTGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGACGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGGCGAGGCGCGGGCGGTGCTCTGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAACGATGAACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTATGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTACAGATTCTATATGA ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGCAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACTGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGACGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGGCGAGGCGCGGGCGGTGCTCTGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAACGATGAACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTATGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTACAGATTCTATATGA ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGCAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACTGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGACGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGGCGAGGCGCGGGCGGTGCTCTGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAACGATGAACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTATGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTACAGATTCTATATGA MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAIYKVPAGLCRRALRTRRRHSLRKGTLPARRGRCSACSYDEADLQILTGGKTMNASELKGKKSDETERKVMELETEMWETFYGTGFWRSPSQRDQITDSI Homology
BLAST of Cp4.1LG08g09440 vs. NCBI nr
Match: XP_023539516.1 (uncharacterized protein LOC111800159 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 320 bits (820), Expect = 2.77e-110 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. NCBI nr
Match: XP_022955715.1 (uncharacterized protein LOC111457605 [Cucurbita moschata] >KAG6571296.1 hypothetical protein SDJN03_30211, partial [Cucurbita argyrosperma subsp. sororia] >KAG6596639.1 hypothetical protein SDJN03_09819, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028178.1 hypothetical protein SDJN02_09358, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 313 bits (803), Expect = 1.08e-107 Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. NCBI nr
Match: XP_038905288.1 (uncharacterized protein LOC120091362 [Benincasa hispida]) HSP 1 Score: 231 bits (589), Expect = 4.83e-75 Identity = 116/156 (74.36%), Postives = 132/156 (84.62%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. NCBI nr
Match: XP_011652052.1 (uncharacterized protein LOC105434984 [Cucumis sativus] >KGN59241.1 hypothetical protein Csa_001735 [Cucumis sativus]) HSP 1 Score: 225 bits (573), Expect = 1.28e-72 Identity = 114/158 (72.15%), Postives = 130/158 (82.28%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. NCBI nr
Match: KAA0043783.1 (uncharacterized protein E6C27_scaffold236G001150 [Cucumis melo var. makuwa] >TYK25350.1 uncharacterized protein E5676_scaffold352G004890 [Cucumis melo var. makuwa]) HSP 1 Score: 225 bits (573), Expect = 1.28e-72 Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. ExPASy TrEMBL
Match: A0A6J1GVU4 (uncharacterized protein LOC111457605 OS=Cucurbita moschata OX=3662 GN=LOC111457605 PE=4 SV=1) HSP 1 Score: 313 bits (803), Expect = 5.25e-108 Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. ExPASy TrEMBL
Match: A0A5D3DQ13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004890 PE=4 SV=1) HSP 1 Score: 225 bits (573), Expect = 6.18e-73 Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. ExPASy TrEMBL
Match: A0A0A0LGV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1) HSP 1 Score: 225 bits (573), Expect = 6.18e-73 Identity = 114/158 (72.15%), Postives = 130/158 (82.28%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. ExPASy TrEMBL
Match: A0A1S4DUJ2 (uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=4 SV=1) HSP 1 Score: 206 bits (525), Expect = 8.74e-66 Identity = 104/157 (66.24%), Postives = 123/157 (78.34%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. ExPASy TrEMBL
Match: A0A6J1J6H8 (uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788 PE=4 SV=1) HSP 1 Score: 187 bits (476), Expect = 2.85e-58 Identity = 99/159 (62.26%), Postives = 118/159 (74.21%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 115.2 bits (287), Expect = 4.9e-26 Identity = 79/179 (44.13%), Postives = 97/179 (54.19%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. TAIR 10
Match: AT2G27180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 95.5 bits (236), Expect = 4.0e-20 Identity = 65/172 (37.79%), Postives = 88/172 (51.16%), Query Frame = 0
BLAST of Cp4.1LG08g09440 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 92.4 bits (228), Expect = 3.4e-19 Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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