Cp4.1LG08g09280 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g09280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich SC35-like splicing factor SCL33
Location	Cp4.1LG08: 7295466 .. 7298783 (-)
RNA-Seq Expression	Cp4.1LG08g09280
Synteny	Cp4.1LG08g09280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAATCGTCGATCTCCGTCTAACAAGTGGTCGTAAAAGAGCGTCCACGAGAAGCCATAGACCTGCGAAGTACTGAAACAAATCCGAGGGAAGTTTCTCGAACATAAAGGGCGTTCGAGGTAGAGGAGACAAAAGCCCCAAGGAAGATTGCAGAATTTGTCTCCGGAGGAAAAGGCTCCGTTCGATTTATCGGTTCTCTGATTCTCAGGTTTTCGCCTTCTTCTTCTCTTTGTTCTTGCTTTCTTTCAATGTTTTCTCGATCGCAAATTTGATTTTATCGAGTTTTGATTCAAGAAACCTCTACTCTTTTTTTTTTTATTAGTCCTTTTTATGCCGAATTGTGTTTTCTATCTCTTTGATCACGTTTGAAGAACGATATCTGTGAAAAAGGCTGCAACTATTGGCGAATTTACATATTTTTCGTTTGACTATTTTTAGAGTAGTTATTCCTTTGAGGTTTTGTTTGATTTGAGAAGCACTCTTGTGAAAGAGAGTTTTGAGAAATCCTGTTTTTGTCTGTGTAGTTTCCTGGTGATATTTTGTTATCTCCGATATCGATCTCATTCGTTCTGAAGAAATATTGAAGCAGTCGATGGAAGGAAAAGTTTATAAGTAATCTTTTTGTGACTAGTTTGTCGCTGGATCAATCTGTTATGTTTTGTGTAATTTAGTATCGGTATCGGTAAATTTTCTTACGCTGTTTTCTATTGATCTTCTAGTGGCATATTTTGTTTAAATAGTTGATACCGTGTTTGTGTTCTAAATAAATATTCGTCTGCTTGGAACGTTTGCCCATGTTCAATTGACGCAAAAGAAAGAATCGCTCGTTGTTTATTTCTTGTGAGTGATGACAGAAATCTGTGGTAGCATGCTGATTGATGTGCGTTAATGTTCGCAGATTTAGGCTATGTTCATCTTGGTGTTTTTTTTTTTTTTTTTTTTTAACACCGTGATTTATTTTATTCCAATTGTTATAGGAAATTGAAAATGAGAGGTCGAAGTTACAGTTACAGTCCATCGCCACCAAGGAGTTATGGCAGGAGAAATCGAAGCCTTAGCCCAAGGGGTCATGGAGGCCGTGGAAGGGATCTGCCGACAAGTCTTTTGGTTCGGAACCTAAGGCATGACTGCAGGTTTGTGGCTGCATTTATACAATTATCTGTTGGTTCTTCAATTATGTTTTTGTTGAATTATAAAGAAATGATATCTTTTAAAAATATGTTCTCTGGTTGATCCAATTTTCAGCTTTCCGTAGTTCTTTCTTTCTTTCTTTCTTTCTTTATTTTAATTGGAAGCTAAGAATATTCAAATTGAAGTGTTTGTGTAATTTTCTTTGTTGGATTTTTCTCCTTTCTCTTAAGCTTCAAGATAGATCAGAATTCTGTTTCAAAAAAAAAAAAAAAATGAGGAGGAAAAAACATTTCTGTTAGGAAAAAAGAACAAATGCCAACCATTCAAAGATGACTCTCGACCAAAAAAGATTCTGAGTAATTGCACAATGGAGTTTCAGTTGTTGAGAATTTAAAGGGAAAAAGGATAATGTGTCTGCTTTTGTTCTATATTGACTTGATAAACTTCTTCATTCTTACTTTTTTTTTTGCAGGCCAGAGGATCTACGTGGATTATTTGGGCGGTTTGGTCCTCTCAAGGACATCTACTTGCCACGAGATTATTATTCCGGGTAGGCATACTCTTGAAGATTGTGCTTTTTCTTCGTATGCATCTAGTGTGTATGCATGTAAGCGTTTGTCTTACAGTAGTTATATTCAAACTCATTTTAGTCCTTACATACGCATGTAGTCTTTATATTTATGAAAAGATTTTCTAAATTGTTACTTCTATGGCTTGCTCCTTTGTTCAATTATTTGGTTTCCAAACAACATACAATCAGTTTATCGAGTTTGGTTGTTTTTATTGGAAGTGTTGAAGACTGTCACCAATGAAGTAATAAGATTATCTAGTGGAAGACAAGAAGCAAGTAATTTGGTTGTTGTGTTGAAGACATTCAAGTAAGTTGTGATGACTTAATGTGTACATGAAGATTCGGTGGAAGGTGGGTTTGATTGAATACATAGAGAAGAAGTTCACAAGTCTTGAAGAATTTCATCTCAATTTTTTTCTTTGCCACGCAGAAGGTTAGCATGGTGACACTCATATTTGTTAGTGCTCTATGTTGTCTGTATATGTTTCTGTCACTGGCAATTTGTCTCTGGATTGATTGATGATTGTAATGATGCCCCTAGTCATCAAATTATCAAACTTTGTATTAACATCCATTGTTAAACTTTGTATTTATGAATGGTATGTGATTGTGAGTGCAGAAAACCACGCGGCTTTGGGTTTGTTCAGTACATTGATCCTGCTGATGCTGCTGATGCAAAGTATGAATTAGATGGCCAAGTTCTATTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCAGAACAGATGAGAGCAAGAGACTCATCAAGGTTGCCATCTCTTGACTTCTCTGAACTCTCTACAAGTATCTTCAAAATTTTCCCTATAACTATAGTGTTGTTCACATATGAAATTGTTATCAGGGGTCGGTCCTACAGTTACAGGCGTTCCCCGCTGCAATATTCTCAATCACCGCCCCATGGTCGAAAATATTCACGTAGTCCTGAATATTATTCCCCTGCTCGGTCTAGACGATATTCAAGGTGGGCAGTTATACTGTGTAGTATTTTTCAATAATGATCATTGGACCATTTAGAAAAGAGAGGGTTGCGGGGTGGACGATTCTAACCTTATTTATATGATACAGGTCGATCTCGCCTAGGGACCGAAGGTACAGGGAGATATCCTACTCAAGGTCACCGTATGATTCAAGGGACCGTGGCTATAGCCGAAGCCGAAGCAGGAGCCGGAGCTATAGCGGAAGCTATTCTAGGTGAGTAAAAAATACTTCCCAAGTTACAAAGTGGGTTAAGCTTAGTTTAGGTGACTTTTCTAAAAACCCAGAAACTATTAAGGTAGAGAGATGTTGGGATTTCGGAAGTCTGTATATGATTTAGAAAATGGTTTGGTCTTTTCTTTTAGAGCCACTGATTTCATGTTCTTATTTTAAAATGTATGGACCATATGGTGGTTTTCTCTATGTAGAATGGAACCTTGGGAATTTTAGGCCTTCTTTTTACCCCAACACTTCTCTCCAATTTTGTGTCTTACTGGTCCCCAATGACCCGATCAATTCGATTAGGCACTCGTCATCTATTTTCGTTATTCAATTCTTTGACAACATGAAAAATTCATTGTTCAACTCTTTACGGTATGAAAAAA

mRNA sequence

CATAATCGTCGATCTCCGTCTAACAAGTGGTCGTAAAAGAGCGTCCACGAGAAGCCATAGACCTGCGAAGTACTGAAACAAATCCGAGGGAAGTTTCTCGAACATAAAGGGCGTTCGAGGTAGAGGAGACAAAAGCCCCAAGGAAGATTGCAGAATTTGTCTCCGGAGGAAAAGGCTCCGTTCGATTTATCGGTTCTCTGATTCTCAGGAAATTGAAAATGAGAGGTCGAAGTTACAGTTACAGTCCATCGCCACCAAGGAGTTATGGCAGGAGAAATCGAAGCCTTAGCCCAAGGGGTCATGGAGGCCGTGGAAGGGATCTGCCGACAAGTCTTTTGGTTCGGAACCTAAGGCATGACTGCAGGCCAGAGGATCTACGTGGATTATTTGGGCGGTTTGGTCCTCTCAAGGACATCTACTTGCCACGAGATTATTATTCCGGAAAACCACGCGGCTTTGGGTTTGTTCAGTACATTGATCCTGCTGATGCTGCTGATGCAAAGTATGAATTAGATGGCCAAGTTCTATTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCAGAACAGATGAGAGCAAGAGACTCATCAAGGTTGCCATCTCTTGACTTCTCTGAACTCTCTACAAGGGTCGGTCCTACAGTTACAGGCGTTCCCCGCTGCAATATTCTCAATCACCGCCCCATGGTCGAAAATATTCACGTAGTCCTGAATATTATTCCCCTGCTCGGTCTAGACGATATTCAAGGTCGATCTCGCCTAGGGACCGAAGGTACAGGGAGATATCCTACTCAAGGTCACCGTATGATTCAAGGGACCGTGGCTATAGCCGAAGCCGAAGCAGGAGCCGGAGCTATAGCGGAAGCTATTCTAGGTGAGTAAAAAATACTTCCCAAGTTACAAAGTGGGTTAAGCTTAGTTTAGGTGACTTTTCTAAAAACCCAGAAACTATTAAGGTAGAGAGATGTTGGGATTTCGGAAGTCTGTATATGATTTAGAAAATGGTTTGGTCTTTTCTTTTAGAGCCACTGATTTCATGTTCTTATTTTAAAATGTATGGACCATATGGTGGTTTTCTCTATGTAGAATGGAACCTTGGGAATTTTAGGCCTTCTTTTTACCCCAACACTTCTCTCCAATTTTGTGTCTTACTGGTCCCCAATGACCCGATCAATTCGATTAGGCACTCGTCATCTATTTTCGTTATTCAATTCTTTGACAACATGAAAAATTCATTGTTCAACTCTTTACGGTATGAAAAAA

Coding sequence (CDS)

ATGAGAGGTCGAAGTTACAGTTACAGTCCATCGCCACCAAGGAGTTATGGCAGGAGAAATCGAAGCCTTAGCCCAAGGGGTCATGGAGGCCGTGGAAGGGATCTGCCGACAAGTCTTTTGGTTCGGAACCTAAGGCATGACTGCAGGCCAGAGGATCTACGTGGATTATTTGGGCGGTTTGGTCCTCTCAAGGACATCTACTTGCCACGAGATTATTATTCCGGAAAACCACGCGGCTTTGGGTTTGTTCAGTACATTGATCCTGCTGATGCTGCTGATGCAAAGTATGAATTAGATGGCCAAGTTCTATTGGGTCGTGAATTAACTGTTGTGTTTGCTGAGGAGAACAGGAAGAGACCAGAACAGATGAGAGCAAGAGACTCATCAAGGTTGCCATCTCTTGACTTCTCTGAACTCTCTACAAGGGTCGGTCCTACAGTTACAGGCGTTCCCCGCTGCAATATTCTCAATCACCGCCCCATGGTCGAAAATATTCACGTAGTCCTGAATATTATTCCCCTGCTCGGTCTAGACGATATTCAAGGTCGATCTCGCCTAGGGACCGAAGGTACAGGGAGATATCCTACTCAAGGTCACCGTATGATTCAAGGGACCGTGGCTATAGCCGAAGCCGAAGCAGGAGCCGGAGCTATAGCGGAAGCTATTCTAGGTGAGTAA

Protein sequence

MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRLPSLDFSELSTRVGPTVTGVPRCNILNHRPMVENIHVVLNIIPLLGLDDIQGRSRLGTEGTGRYPTQGHRMIQGTVAIAEAEAGAGAIAEAILGE

Homology

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.1e-51
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G PRGFGFVQ++DPADAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEQMRARD 128
           P +MRAR+
Sbjct: 121 PTEMRARE 126

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-49
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGH--GGRGRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RS SPRG   G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G PRGFGF+Q++DPADAA+AK+++DG +LLGRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEQMRARD 128
           +P +MR RD
Sbjct: 121 KPTEMRTRD 127

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSP----RGHGGRG------RDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RS  P    RG+GG G           SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+++D  DA +A+  ++ +   GRE+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEQMR--ARDSSRLPS 134
           V A E+RKRPE+MR   R  SR PS
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPS 145

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-28
Identity = 74/151 (49.01%), Postives = 92/151 (60.93%), Query Frame = 0


Query: 2   RGRSYSYSP-----SPPRSY-----GRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPE 61
           R RS SYSP     SPPR        R     S R H   G   P+ LL+RNL  D RP 
Sbjct: 5   RSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDARPN 64

Query: 62  DLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVV 121
           DLR  F RFGPLKDIYLPR+YY+G+PRGFGFV+Y    DAA+A   ++ +V+ GRE+ +V
Sbjct: 65  DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIV 124

Query: 122 FAEENRKRPEQMRARDSSRLPSLDFSELSTR 143
           FAEENRK P++MR  + +     D+   S R
Sbjct: 125 FAEENRKTPQEMRTTNGTSGRHGDYKRTSHR 152

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-21
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 37  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKY 96
           TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+ +PRGF +VQ+ D  DA DA +
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 97  ELDGQVLLGRELTVVFAEENRKRPEQMRARDSSRLPS 134
            LD + + GR++ + FA+ +RK P QM+A++   + S
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106

[Close]

BLAST of Cp4.1LG08g09280 vs. NCBI nr
Match: KAG7028197.1 (Serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (826), Expect = 4.30e-109
Identity = 175/227 (77.09%), Postives = 182/227 (80.18%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EQMRARDSSRLPSLDF--SELSTRVGPTVTGVPRCNILNHRPMVENIHVVLNIIPLLGLD 180
           EQMRARDSSR  S  +  S L     P        +   + P     +    +I      
Sbjct: 121 EQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRWAVI------ 180

Query: 181 DIQGRSRLGTEGTGRYPTQGHRMIQGTVAIAEAEAGAGAIAEAILGE 225
            +  +SRLGTEGTG  PTQGH MIQGTVAIAEAEAGAGAIAEAILGE
Sbjct: 181 -LCSQSRLGTEGTGSDPTQGHHMIQGTVAIAEAEAGAGAIAEAILGE 220

[Close]

BLAST of Cp4.1LG08g09280 vs. NCBI nr
Match: KAA0043761.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis melo var. makuwa] >TYK25372.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 318 bits (816), Expect = 5.32e-107
Identity = 180/262 (68.70%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR RS SPR  GGR RDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++D ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EQMRARDSSRLPSL--------DFS-----ELSTR----------------------VGP 180
           E+MRARDSSR+ S         +FS      L T                       VGP
Sbjct: 121 EEMRARDSSRIVSFRNSLEASSNFSYICKVSLETEPFDDTYHPSTIVVLSVKGKGSWVGP 180

Query: 181 TVT--GVPRCNILNHRPMVENIHVVLNIIPLLGLDDIQGRSRLGTEGTGRYPTQGHRMIQ 225
           TVT  G+ RC+I +H  M+ENIHVVL+IIPL G DDIQGR  LG   TG  PTQGH MIQ
Sbjct: 181 TVTAAGIHRCDIHDHHTMIENIHVVLSIIPLHGPDDIQGR--LGAADTGSNPTQGHHMIQ 240

[Close]

BLAST of Cp4.1LG08g09280 vs. NCBI nr
Match: XP_023539101.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271 bits (692), Expect = 1.12e-88
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 11  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 70

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 71  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 130

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSSR  S  +
Sbjct: 131 EQMRARDSSRGRSYSY 146

[Close]

BLAST of Cp4.1LG08g09280 vs. NCBI nr
Match: XP_023005835.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucurbita maxima])

HSP 1 Score: 269 bits (688), Expect = 3.46e-88
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 60

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSSR  S  +
Sbjct: 121 EQMRARDSSRGRSYSY 136

[Close]

BLAST of Cp4.1LG08g09280 vs. NCBI nr
Match: XP_023005834.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxima])

HSP 1 Score: 269 bits (688), Expect = 3.96e-88
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 64

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 124

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSSR  S  +
Sbjct: 125 EQMRARDSSRGRSYSY 140

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy TrEMBL
Match: A0A5A7TQD2 (Serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005120 PE=4 SV=1)

HSP 1 Score: 318 bits (816), Expect = 2.57e-107
Identity = 180/262 (68.70%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR RS SPR  GGR RDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++D ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EQMRARDSSRLPSL--------DFS-----ELSTR----------------------VGP 180
           E+MRARDSSR+ S         +FS      L T                       VGP
Sbjct: 121 EEMRARDSSRIVSFRNSLEASSNFSYICKVSLETEPFDDTYHPSTIVVLSVKGKGSWVGP 180

Query: 181 TVT--GVPRCNILNHRPMVENIHVVLNIIPLLGLDDIQGRSRLGTEGTGRYPTQGHRMIQ 225
           TVT  G+ RC+I +H  M+ENIHVVL+IIPL G DDIQGR  LG   TG  PTQGH MIQ
Sbjct: 181 TVTAAGIHRCDIHDHHTMIENIHVVLSIIPLHGPDDIQGR--LGAADTGSNPTQGHHMIQ 240

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy TrEMBL
Match: A0A6J1KYI3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 1.67e-88
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 60

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSSR  S  +
Sbjct: 121 EQMRARDSSRGRSYSY 136

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy TrEMBL
Match: A0A6J1L0E4 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 1.92e-88
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 64

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 124

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSSR  S  +
Sbjct: 125 EQMRARDSSRGRSYSY 140

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy TrEMBL
Match: A0A6J1L3A1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 2.34e-88
Identity = 130/136 (95.59%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 11  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 70

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 71  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 130

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSSR  S  +
Sbjct: 131 EQMRARDSSRGRSYSY 146

[Close]

BLAST of Cp4.1LG08g09280 vs. ExPASy TrEMBL
Match: A0A6J1G9Y1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 9.00e-88
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGKPRGFGFVQYIDP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EQMRARDSSRLPSLDF 136
           EQMRARDSS   S  +
Sbjct: 121 EQMRARDSSSGRSYSY 136

[Close]

BLAST of Cp4.1LG08g09280 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G PRGFGFVQ++DPADAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEQMRARD 128
           P +MRAR+
Sbjct: 121 PTEMRARE 126

[Close]

BLAST of Cp4.1LG08g09280 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G PRGFGFVQ++DPADAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEQMRARD 128
           P +MRAR+
Sbjct: 121 PTEMRARE 126

[Close]

BLAST of Cp4.1LG08g09280 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-50
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGH--GGRGRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RS SPRG   G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G PRGFGF+Q++DPADAA+AK+++DG +LLGRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEQMRARD 128
           +P +MR RD
Sbjct: 121 KPTEMRTRD 127

[Close]

BLAST of Cp4.1LG08g09280 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 195.3 bits (495), Expect = 5.3e-50
Identity = 100/140 (71.43%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRG-HGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RS SPRG +GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGK------------PRGFGFVQYIDPADAADAKYELDGQVLLGRE 120
           FGP+KDIYLPRDYY+G             PRGFGFVQ++DPADAADAK+ +DG +LLGRE
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 121 LTVVFAEENRKRPEQMRARD 128
           LTVVFAEENRK+P +MRAR+
Sbjct: 121 LTVVFAEENRKKPTEMRARE 138

[Close]

BLAST of Cp4.1LG08g09280 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 131.3 bits (329), Expect = 9.5e-31
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRNRSLSP----RGHGGRG------RDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RS  P    RG+GG G           SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+++D  DA +A+  ++ +   GRE+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEQMR--ARDSSRLPS 134
           V A E+RKRPE+MR   R  SR PS
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPS 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g09280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	2.1e-51	78.13	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	4.4e-49	74.42	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	1.3e-29	51.03	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	1.9e-28	49.01	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	3.9e-21	47.42	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of Cp4.1LG08g09280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028197.1	4.30e-109	77.09	Serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita argyrosperma su...	[more]
KAA0043761.1	5.32e-107	68.70	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis melo va...	[more]
XP_023539101.1	1.12e-88	96.32	serine/arginine-rich SC35-like splicing factor SCL33 [Cucurbita pepo subsp. pepo...	[more]
XP_023005835.1	3.46e-88	95.59	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucurbita maxim...	[more]
XP_023005834.1	3.96e-88	95.59	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxim...	[more]

BLAST of Cp4.1LG08g09280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQD2	2.57e-107	68.70	Serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucumis melo ...	[more]
A0A6J1KYI3	1.67e-88	95.59	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita max...	[more]
A0A6J1L0E4	1.92e-88	95.59	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max...	[more]
A0A6J1L3A1	2.34e-88	95.59	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita max...	[more]
A0A6J1G9Y1	9.00e-88	94.85	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita mos...	[more]

BLAST of Cp4.1LG08g09280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	1.5e-52	78.13	SC35-like splicing factor 33	[more]
AT1G55310.2	1.5e-52	78.13	SC35-like splicing factor 33	[more]
AT3G13570.1	3.1e-50	74.42	SC35-like splicing factor 30A	[more]
AT1G55310.3	5.3e-50	71.43	SC35-like splicing factor 33	[more]
AT3G55460.1	9.5e-31	51.03	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 1.6E-22 score: 90.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..108 e-value: 2.6E-19 score: 68.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 17.591679
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..138 e-value: 4.2E-26 score: 93.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..127
None	No IPR available	PANTHER	PTHR23147:SF158	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL33	coord: 1..127
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 37..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g09280.1	Cp4.1LG08g09280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding