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Cp4.1LG08g09260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTAGGGTTTCTTTCATTTGTGAGAGTGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAAAGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGCGCCATCCATAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGCGTGGAGATTAACAAGCAGGTTCGTTCGATTTCCGATTCCTTTCATTTTTCGATTAATTCTGTTTTAGTTTCTTTTTTTGTTATATCTGTTCTGGTTTTGGAAATGTTTAAAATTATAGTGTTTTAGGTCTCGGATTGTGTTTGATTTGTGTAGTAACTTGTTTAGGTTTAGGCTGGATAAGTTGTGGACTCTGTTCTGTTTACATTTCGCTGGTTCTTATTGATTTGATCTTAGGATGTGGAATATGTATCCGTTAATTTTTATAGAAAATCACTTGGTGAATGTTTTTGTAGTTGCGCGGTTTCAGATTGTCGAATGCTAACTATGTTTGTTGGACGTTGCTGGGAATTCACATCATGTTTTAGTTGTCTGCAAATAATTAGTTTGTCACATGTGTTTGAAGACAAATTTTCAATGAATCTCTACTAGTGGCGTGTTCATGAATCGATTCGGGTTCAGAACAGCTAAATCAAGTGGTAACATAAATTGCTCGATTGTGATTCGAGCAATAAACTTTCACTTTTGTCCTGATTCTACTGAATAAAATTTGCAGGTGGGTAACAGAATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCCGAAGAATTCGTACTGCGTAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGTCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTTAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTGCATGTTCATGAATC CTAGGGTTTCTTTCATTTGTGAGAGTGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAAAGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGCGCCATCCATAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGCGTGGAGATTAACAAGCAGGTGGGTAACAGAATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCCGAAGAATTCGTACTGCGTAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGTCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTTAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTGCATGTTCATGAATC ATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGCGCCATCCATAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGCGTGGAGATTAACAAGCAGGTGGGTAACAGAATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCCGAAGAATTCGTACTGCGTAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGTCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTTAAGGGAGGTTATTAG MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY Homology
BLAST of Cp4.1LG08g09260 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81 Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2) HSP 1 Score: 303.1 bits (775), Expect = 1.9e-81 Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42 Identity = 90/158 (56.96%), Postives = 115/158 (72.78%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.8e-42 Identity = 83/157 (52.87%), Postives = 114/157 (72.61%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy Swiss-Prot
Match: Q12672 (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 8.5e-42 Identity = 82/157 (52.23%), Postives = 114/157 (72.61%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. NCBI nr
Match: XP_022947529.1 (60S ribosomal protein L21-2-like [Cucurbita moschata] >XP_023005832.1 60S ribosomal protein L21-2-like [Cucurbita maxima] >XP_023540746.1 60S ribosomal protein L21-2-like [Cucurbita pepo subsp. pepo] >KAG6596663.1 60S ribosomal protein L21-2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 338 bits (866), Expect = 4.21e-117 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. NCBI nr
Match: XP_022983129.1 (60S ribosomal protein L21-1-like [Cucurbita maxima]) HSP 1 Score: 331 bits (848), Expect = 2.34e-114 Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida]) HSP 1 Score: 330 bits (847), Expect = 3.33e-114 Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. NCBI nr
Match: KAG6580788.1 (60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 330 bits (847), Expect = 3.33e-114 Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo] >KAG6580787.1 60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 330 bits (846), Expect = 4.72e-114 Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy TrEMBL
Match: A0A6J1KU90 (60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=3 SV=1) HSP 1 Score: 338 bits (866), Expect = 2.04e-117 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy TrEMBL
Match: A0A6J1G726 (60S ribosomal protein L21-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451367 PE=3 SV=1) HSP 1 Score: 338 bits (866), Expect = 2.04e-117 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy TrEMBL
Match: A0A6J1J6F8 (60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=3 SV=1) HSP 1 Score: 331 bits (848), Expect = 1.13e-114 Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1) HSP 1 Score: 330 bits (846), Expect = 2.29e-114 Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. ExPASy TrEMBL
Match: A0A6J1F2B9 (60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 SV=1) HSP 1 Score: 330 bits (846), Expect = 2.29e-114 Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein ) HSP 1 Score: 303.9 bits (777), Expect = 7.8e-83 Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein ) HSP 1 Score: 303.9 bits (777), Expect = 7.8e-83 Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein ) HSP 1 Score: 303.1 bits (775), Expect = 1.3e-82 Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 0
BLAST of Cp4.1LG08g09260 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein ) HSP 1 Score: 303.1 bits (775), Expect = 1.3e-82 Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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