Cp4.1LG08g09210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g09210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cold shock domain-containing protein 3-like
Location	Cp4.1LG08: 7249293 .. 7252835 (+)
RNA-Seq Expression	Cp4.1LG08g09210
Synteny	Cp4.1LG08g09210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTCCATTAAATCAGATGGCTACCGTAGCCTTGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCCAAAGCTATTGAGGTCGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGACGAGGTGGCCGCGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGCAGCAGTGGAGCTGGTGGGGGTGGGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTCCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGGTTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGAGGCGGGGCCGGTGGTGGTGGTTGCTATAATTGTGGTGGTTTTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAGTATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGCCGTAACAGCGGCGGCGGCGGAAGATTTGGTGGCGGAGGTGGCGGTGGCGCCAACACTTGCTTCAATTGCGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCACCATGATAAGGAGAGGAAAAAGAGTAATAGTATATAATTTTTCCTTTTACTTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTCTACGTAGCTTACTTGAGAATTTTTTTATTAATTTTTATCCCATGGTTGTTTCGCTCCTTAGGGGCAAATTTTCTGGTTCATACGATGTTCTAATTCGGATAAATGAGGCATTTTATCCTTCTTGCCTTCTTTAGTTATGATGCCAATATTTTTGTATCCCTTTTTTTTGTTTGAATTTTAGTTCAATAATGACCTTTTAGATCTCGGTTTCATATTCGAATCAATGCCTGCCTTAATTGTCATTATCCATGTTAGCATCTAATGCTTCATTGGGTTGAAGTAGCTATGTTGGATTGATTTATACATTATTAGCATGATCTTTGGTTTTGCATTGCCATACCAGGCCTTCATTTTTGTTTGCCTCTTCCATCATCAAGAATGATATGTCTTATAGAATTCATTTAGTCTGATCCTCTTAAGAGTAGGCATGTTTTCGTGCGCTCTGCTCTGTCTTGTTGATCTTCTTAGCACTATGTTCTGTTCTATAATTTGTTGTGGAAGTGTTTTAGAGACTGTTGGATCTATGTTTTAAATCTTTTGTGTCTTATATACTTTCAAGTTTCATAGATTCGACCCCTAGTAGTCAAACTGGTTGTGAACCAGTGAATTGAAAGAAGACTAATGTCTTCTTGATACTTCATTACTTCCATTCTAGAAATGAATGCTTGTAAGTGAAAGGTTACAATCGTGTTCATGTGAAGGTGATGTGTAGATCAGGGGTGCCCTTTCTTCTTCTTAAGGAGTTGGGATGGTTAAGGATTTTTTTTTTCTTTTTTCTTTTGGTTTAATCTATCATTTTAGTAGAAATCTTAGAAAACATAGTGCAAATCAAAGGAATGAACTTCTTTTAGTTTGTTCGAATAGCTAGATTAATGAAAGTTCATTAAAATTTTAGTAAATAAAGAGTAGTTTGGTGTAGGTTCTAAAACTCATCTCTTCGCCCGATGCAAGGATTTTTTCCCTGGTAGATAATAAACATTTTGTGTTGGTTTTGGGGATTAGTATGCTTCTTTTCTTCATTTTTATCATTTTCTGTTTTCAAGGAGTTTTGTTTTGTGGCCTTTTGGATTAAGAATTGAATACTCAGAAGAGTCAGGAAGGTGTTTTAAATCCCTACTTATCCTCCCCCAAATCCTTCCTTTACTAATACCTTAATGATTAGTTTGTCCATTATTGCTTGAACAAAGAGAGGAATATAGGATCATATGTACAATTTAGTTGAAATGCTCTTTTAGCATGCATTCTTCTGTTTGATAGATGTTGATGATTATAATTCAGTTCAATATATATTTTATCTCATTCCAATGTACATAGTTTTTGCCTTGGGTATTATATTTTGAACCTTAGTTTCTGCTCATCTTGTGAGGAGCCTGATGAAATCTCTCTCATTGCCATTGTTTTGTTCTCTTTAGCTCTCTGGTTCTTTTCTTCATTGCTACTTGGTATTGAGTTGCAAAAATTCGTAACATTAAAAGCTTGCGGCTGTTGAATGGCTGCTCGGAGAACTTGTGAGCTTTTCAATTTGAATCGAGTTCGTTTATGCGTACTCTCATCGTTCATTGAGTGTCTACAATGCTTGATTGTCATCTCTCATGAGACGCTTTTCATCAAACAGGATGAGTTTCATAGTCTTGTAAATTGTTTCTTAGGTTTAAGTTTGTAGAGTGAACTCTTAGAGCTTTAGCTTAGGAATATGAAAATCTTGACCCTTCTTCTTGAGTGCATCCCATTGATCCATTGTTTAAATGATTGAATTGATGGCCAATCCTCTCAGAATTGAACTAAAGGGAGGAAGATCTTAATGTTCCCTCTATATTTTGTTACACTAGAAGTTCAAACCAAAAAATTTCATCCATTTTATCTTCCCTTCCTTATTTTTTCATCTTGGCTTTAACCATTTTGTTCGTGTTAGAGCGATGGCGGATCTCGAGAGTATATATGCAAAGTTTAAAGAGATTTTAAAGCTTTCCTTTTTGTTATTCATGTATATTGTATTGTTGGAGTTTATGCTTTTTGTGTAAGGGGATGGCGAAAAAAGGAAGCTGAAAATGTGACGTTTTCTAAATCAGTGTGTGCTTACAGCACAGTGTGGCCGGGAGTTATGTCAGGCGACGGCTTCGTCCCTGCTGCACCCAGGAGAGTGGAACGCCCTCCCCATGCTCGCGGTCGTGGTCCGGCTGCATCTGCGGCCGCACATATTGCTCCGAAGAAGCAGCAGGCAGGCAGATTCTCCGACCAAGTTCAGGCTGAATGGTGCCGGCGGGGTTGATTTCATTTTACAAATATTAGTATTAAATATCACCTTGACTCGAGATTAGATCTTTTTTATTTGACATCTAAGTTATAGGAGGATTGATCGATGAACTTAGAATGGATAGTGAGTGATGTAAACCATTTCCGTGCAGGGCTCGTAAGATTCTTCAGGAATAGGGGCTGATTAATTAGGCGAAAGAAAATATGAGGTTACTTCATTCAAGAAAACATGAAAGGATAATTTGAATATCGAGTTTTGTGGTCGAAAGAATTTTGAATTATGAGTTATGCTCACTTTGTCCTCGGTCCGATTTGGTCTAGAATTTTGAAGGGCTTGATGAAGCATAGGCAAAATACCCTTCATCGCGCCACCTTCAAGAATACAAAATCAAAAGAATTCT

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTCCATTAAATCAGATGGCTACCGTAGCCTTGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCCAAAGCTATTGAGGTCGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGACGAGGTGGCCGCGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGCAGCAGTGGAGCTGGTGGGGGTGGGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTCCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGGTTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGAGGCGGGGCCGGTGGTGGTGGTTGCTATAATTGTGGTGGTTTTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGACACAGTGTGGCCGGGAGTTATGTCAGGCGACGGCTTCGTCCCTGCTGCACCCAGGAGAGTGGAACGCCCTCCCCATGCTCGCGGTCGTGGTCCGGCTGCATCTGCGGCCGCACATATTGCTCCGAAGAAGCAGCAGGCAGGCAGATTCTCCGACCAAGTTCAGGCTGAATGGTGCCGGCGGGGTTGATTTCATTTTACAAATATTAGTATTAAATATCACCTTGACTCGAGATTAGATCTTTTTTATTTGACATCTAAGTTATAGGAGGATTGATCGATGAACTTAGAATGGATAGTGAGTGATGTAAACCATTTCCGTGCAGGGCTCGTAAGATTCTTCAGGAATAGGGGCTGATTAATTAGGCGAAAGAAAATATGAGGTTACTTCATTCAAGAAAACATGAAAGGATAATTTGAATATCGAGTTTTGTGGTCGAAAGAATTTTGAATTATGAGTTATGCTCACTTTGTCCTCGGTCCGATTTGGTCTAGAATTTTGAAGGGCTTGATGAAGCATAGGCAAAATACCCTTCATCGCGCCACCTTCAAGAATACAAAATCAAAAGAATTCT

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTCCATTAAATCAGATGGCTACCGTAGCCTTGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCCAAAGCTATTGAGGTCGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGACGAGGTGGCCGCGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGCAGCAGTGGAGCTGGTGGGGGTGGGTGTTATCAATGCGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTCCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGGTTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGAGGCGGGGCCGGTGGTGGTGGTTGCTATAATTGTGGTGGTTTTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGACACAGTGTGGCCGGGAGTTATGTCAGGCGACGGCTTCGTCCCTGCTGCACCCAGGAGAGTGGAACGCCCTCCCCATGCTCGCGGTCGTGGTCCGGCTGCATCTGCGGCCGCACATATTGCTCCGAAGAAGCAGCAGGCAGGCAGATTCTCCGACCAAGTTCAGGCTGAATGGTGCCGGCGGGGTTGA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGDTVWPGVMSGDGFVPAAPRRVERPPHARGRGPAASAAAHIAPKKQQAGRFSDQVQAEWCRRG

Homology

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 125/257 (48.64%), Postives = 147/257 (57.20%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRG--------------GRGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G G                  G GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCARP--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN--- 184
               G G CY CG+ GH ARDC +    N GGGGG G  C++CGEVGHLA+DC  G+   
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAG--GGSG-------------------- 217
              GGGG G+GG GCY CGG GH ARDC + G G  GG G                    
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKI 249

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.6e-39
Identity = 117/217 (53.92%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 1   MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  SGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGGGYGFG-GWRGGDRRNGSSGA 120
           SG DG++KA++V   DG++  G R    GGGGG GGRGGGGYG G G  GG  R GS G 
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGR----GGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGY 120

Query: 121 GG--GGCYQCGEQGHLARDCARPSNRGGGGGSGG-------GCFTCGEVGHLARDCPR-- 180
           GG  GG    G  G  +R        GGGGG GG       GCF CGE GH ARDC +  
Sbjct: 121 GGGDGGYGGGGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSG 180

Query: 181 -----GNSGGGGGGAGGGGCYNCGGFGHLARDCNRGG 196
                G  GGGGGG GGGGCY CG  GH AR+C  GG
Sbjct: 181 GGGGGGRFGGGGGGGGGGGCYKCGEDGHFARECTSGG 213

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.8e-37
Identity = 115/230 (50.00%), Postives = 131/230 (56.96%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG-------------YGFGGWRGGDRRNGS 124
           KA+ V A  G S  + +N  G G R G GG G              G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR-- 129

Query: 125 SGAGGGGCYQCGEQGHLARDCARPSN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDC    N   RG   G   GC+TCG+VGH+ARDC + + G 
Sbjct: 130 -SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GG--GGAGGG--GCYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCG 215
           G   G   GG  GCY CG  GH ARDC +  A G    GGGG G C++CG
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCG 236

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-32
Identity = 104/208 (50.00%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGS----------SGNRRDNFGGGGGR-GGRGGGGYGFGGWRGGDRRNGSS 123
            KAIEV   DG+          S   R  FGGGGGR GGRGGG YG GG+ G     GS 
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYG-GGYGG----RGSG 132

Query: 124 GAGGGG----CYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGG 183
           G GGGG    C++CGE GH+AR+C    ++GGGG SGGG                G+ GG
Sbjct: 133 GRGGGGGDNSCFKCGEPGHMAREC----SQGGGGYSGGG-----------GGGRYGSGGG 192

Query: 184 GGGGAGGGGCYNCGGFGHLARDCNRGGA 197
           GGGG GG  CY+CG  GH ARDC  GGA
Sbjct: 193 GGGGGGGLSCYSCGESGHFARDCTSGGA 200

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.0e-31
Identity = 106/217 (48.85%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 123
            KAI+V   DG+   GN      GGG  GGRG    GFGG RGG R +G    GGGG Y 
Sbjct: 69  PKAIDVSGPDGAPVQGN-----SGGGSSGGRG----GFGGGRGGGRGSGGGYGGGGGGY- 128

Query: 124 CGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGGCY 183
                           RGGGG  G  C+ CGE GH+ARDC  G    GGGGGG GGGG Y
Sbjct: 129 --------------GGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGY 188

Query: 184 NCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGDT 217
             GG          GG GGG  GGGGGGG C++CG++
Sbjct: 189 GGGG----------GGYGGGGRGGGGGGGSCYSCGES 191

[Close]

BLAST of Cp4.1LG08g09210 vs. NCBI nr
Match: XP_023540854.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023540855.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408 bits (1048), Expect = 2.39e-141
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180
           QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN
Sbjct: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCG+
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGE 215

[Close]

BLAST of Cp4.1LG08g09210 vs. NCBI nr
Match: KAG7028203.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397 bits (1021), Expect = 2.77e-137
Identity = 211/215 (98.14%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN
Sbjct: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           CGGFGHLARDCNRGGAGGGSGGGGGGG  CFNCG+
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGGG--CFNCGE 213

[Close]

BLAST of Cp4.1LG08g09210 vs. NCBI nr
Match: KAG6596667.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397 bits (1021), Expect = 2.87e-137
Identity = 211/215 (98.14%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN
Sbjct: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           CGGFGHLARDCNRGGAGGGSGGGGGGG  CFNCG+
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGGG--CFNCGE 213

[Close]

BLAST of Cp4.1LG08g09210 vs. NCBI nr
Match: XP_022948847.1 (cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protein 1-like [Cucurbita moschata])

HSP 1 Score: 394 bits (1013), Expect = 4.58e-136
Identity = 209/215 (97.21%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN
Sbjct: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           CGGFGHLARDCNRGGAGGGSGGGGGG   CFNCG+
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGG---CFNCGE 212

[Close]

BLAST of Cp4.1LG08g09210 vs. NCBI nr
Match: XP_023005696.1 (cold shock domain-containing protein 3-like [Cucurbita maxima] >XP_023005697.1 cold shock domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 387 bits (995), Expect = 2.70e-133
Identity = 209/216 (96.76%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGG-AGGGGCY 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDC RGN GGGGGG AGGGGCY
Sbjct: 121 QCGEQGHLARDCARGSNRGGGGGSGGGCFTCGEVGHLARDCQRGNGGGGGGGGAGGGGCY 180

Query: 181 NCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           NCGGFGHLARDCNRGGAGGG  GGGGGGGGCFNCG+
Sbjct: 181 NCGGFGHLARDCNRGGAGGG--GGGGGGGGCFNCGE 214

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy TrEMBL
Match: A0A6J1GAE9 (cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=1)

HSP 1 Score: 394 bits (1013), Expect = 2.22e-136
Identity = 209/215 (97.21%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN
Sbjct: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           CGGFGHLARDCNRGGAGGGSGGGGGG   CFNCG+
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGG---CFNCGE 212

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy TrEMBL
Match: A0A6J1KVQ4 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111498622 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 1.31e-133
Identity = 209/216 (96.76%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGG-AGGGGCY 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDC RGN GGGGGG AGGGGCY
Sbjct: 121 QCGEQGHLARDCARGSNRGGGGGSGGGCFTCGEVGHLARDCQRGNGGGGGGGGAGGGGCY 180

Query: 181 NCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           NCGGFGHLARDCNRGGAGGG  GGGGGGGGCFNCG+
Sbjct: 181 NCGGFGHLARDCNRGGAGGG--GGGGGGGGCFNCGE 214

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy TrEMBL
Match: A0A0A0L4X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 381 bits (978), Expect = 7.18e-131
Identity = 207/221 (93.67%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG----RGGRGGGGYGFGGWRGGDRRNGSSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGG    RGG GGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180
           GGCYQCGEQGHLARDC RPSNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGGGG GGG
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 G--CYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           G  CYNCGGFGHLARDCNRGGAGGGSGGGGGGGG CFNCG+
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGG-CFNCGE 220

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy TrEMBL
Match: A0A6J1E5N5 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430958 PE=4 SV=1)

HSP 1 Score: 374 bits (961), Expect = 1.95e-128
Identity = 206/218 (94.50%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--YGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG  YGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGG-AGGGG 180
           CYQCGEQGHLARDC R SNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGGGG AGGG 
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGA 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           CYNCGGFGHLARDCNRGGAGGGSGGGGGG   CFNCG+
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGG---CFNCGE 214

[Close]

BLAST of Cp4.1LG08g09210 vs. ExPASy TrEMBL
Match: A0A6J1HNK3 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111465226 PE=4 SV=1)

HSP 1 Score: 372 bits (956), Expect = 1.08e-127
Identity = 202/217 (93.09%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--YGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG  YGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGC 180
           CYQCGEQGHLARDC R SNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGG   AGGG C
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGG---AGGGAC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGD 215
           YNCGGFGHLARDCNRGGAGGGSGGGGG    CFNCG+
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGS---CFNCGE 211

[Close]

BLAST of Cp4.1LG08g09210 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-42
Identity = 125/257 (48.64%), Postives = 147/257 (57.20%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRG--------------GRGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G G                  G GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCARP--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN--- 184
               G G CY CG+ GH ARDC +    N GGGGG G  C++CGEVGHLA+DC  G+   
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAG--GGSG-------------------- 217
              GGGG G+GG GCY CGG GH ARDC + G G  GG G                    
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKI 249

[Close]

BLAST of Cp4.1LG08g09210 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-38
Identity = 115/230 (50.00%), Postives = 131/230 (56.96%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG-------------YGFGGWRGGDRRNGS 124
           KA+ V A  G S  + +N  G G R G GG G              G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR-- 129

Query: 125 SGAGGGGCYQCGEQGHLARDCARPSN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDC    N   RG   G   GC+TCG+VGH+ARDC + + G 
Sbjct: 130 -SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GG--GGAGGG--GCYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCG 215
           G   G   GG  GCY CG  GH ARDC +  A G    GGGG G C++CG
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCG 236

[Close]

BLAST of Cp4.1LG08g09210 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 139.4 bits (350), Expect = 4.3e-33
Identity = 104/208 (50.00%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGS----------SGNRRDNFGGGGGR-GGRGGGGYGFGGWRGGDRRNGSS 123
            KAIEV   DG+          S   R  FGGGGGR GGRGGG YG GG+ G     GS 
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYG-GGYGG----RGSG 132

Query: 124 GAGGGG----CYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGG 183
           G GGGG    C++CGE GH+AR+C    ++GGGG SGGG                G+ GG
Sbjct: 133 GRGGGGGDNSCFKCGEPGHMAREC----SQGGGGYSGGG-----------GGGRYGSGGG 192

Query: 184 GGGGAGGGGCYNCGGFGHLARDCNRGGA 197
           GGGG GG  CY+CG  GH ARDC  GGA
Sbjct: 193 GGGGGGGLSCYSCGESGHFARDCTSGGA 200

[Close]

BLAST of Cp4.1LG08g09210 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-32
Identity = 106/217 (48.85%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 123
            KAI+V   DG+   GN      GGG  GGRG    GFGG RGG R +G    GGGG Y 
Sbjct: 69  PKAIDVSGPDGAPVQGN-----SGGGSSGGRG----GFGGGRGGGRGSGGGYGGGGGGY- 128

Query: 124 CGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGGCY 183
                           RGGGG  G  C+ CGE GH+ARDC  G    GGGGGG GGGG Y
Sbjct: 129 --------------GGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGY 188

Query: 184 NCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGDT 217
             GG          GG GGG  GGGGGGG C++CG++
Sbjct: 189 GGGG----------GGYGGGGRGGGGGGGSCYSCGES 191

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g09210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C69	4.1e-41	48.64	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
P27484	6.6e-39	53.92	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
O65639	2.8e-37	50.00	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
Q38896	6.0e-32	50.00	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	3.0e-31	48.85	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]

BLAST of Cp4.1LG08g09210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540854.1	2.39e-141	99.53	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023...	[more]
KAG7028203.1	2.77e-137	98.14	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596667.1	2.87e-137	98.14	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948847.1	4.58e-136	97.21	cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protei...	[more]
XP_023005696.1	2.70e-133	96.76	cold shock domain-containing protein 3-like [Cucurbita maxima] >XP_023005697.1 c...	[more]

BLAST of Cp4.1LG08g09210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAE9	2.22e-136	97.21	cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=...	[more]
A0A6J1KVQ4	1.31e-133	96.76	cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0L4X7	7.18e-131	93.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1	[more]
A0A6J1E5N5	1.95e-128	94.50	cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HNK3	1.08e-127	93.09	cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Cp4.1LG08g09210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17870.1	2.9e-42	48.64	cold shock domain protein 3	[more]
AT4G36020.1	2.0e-38	50.00	cold shock domain protein 1	[more]
AT2G21060.1	4.3e-33	50.00	glycine-rich protein 2B	[more]
AT4G38680.1	2.1e-32	48.85	glycine rich protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 29..38 score: 59.44 coord: 8..23 score: 61.03 coord: 44..62 score: 40.51
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..71 e-value: 3.6E-23 score: 81.2
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 5..71 score: 30.372931
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 2.3222E-23 score: 88.4046
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 9.4E-25 score: 98.2
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 118..134 e-value: 0.0016 score: 27.7 coord: 177..193 e-value: 5.2E-4 score: 29.3 coord: 147..163 e-value: 2.6E-5 score: 33.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 177..191 e-value: 8.0E-6 score: 25.7 coord: 147..162 e-value: 1.2E-7 score: 31.5 coord: 118..132 e-value: 1.2E-5 score: 25.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 178..191 score: 10.476859
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 148..163 score: 11.086722
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 119..132 score: 10.971343
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 5.8E-25 score: 89.0
None	No IPR available	GENE3D	4.10.60.10		coord: 168..218 e-value: 3.4E-7 score: 31.9
None	No IPR available	GENE3D	4.10.60.10		coord: 143..167 e-value: 1.3E-7 score: 33.1 coord: 105..142 e-value: 3.4E-6 score: 28.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..276
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..109
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 135..215
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 1..109 coord: 109..138
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 109..138
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 135..215
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 166..191
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 119..162
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g09210.1	Cp4.1LG08g09210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding