Cp4.1LG08g09190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAGTTCATCAAAACCTCTCGATGATCTCGAATCGATGATATTGTTCACTTCAACAGTCTCAACCGACATGATTGTAATTTCAGTTTCACCTAAAGTACCTCATTCCGTTCCCTATATCTCAATGCCTGTCCTATTCTTGTCCACGTCTCTAGAATTGTGAATGGATAGAAACGAGACGATATCAACTACCCAGAACGTGTATTGTATGCATCGTTAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATATAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAAGAAAATGGAGAAATACGCAAATTCTAAGGAGCAAACGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGGTCGGCCTGTTTTTCTTTCTGTAAATTTTCGTCTTCTCCGATCAACGTGTGAACTGAATCGGAAACTGATGATCGCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTAATTTCATTGAATCCTTTGTGTTCTGTTTCACTTTCTTGGCTCTGTTTTCTATTGATTTGAACGTTTGTTTGAGTTCTTCCATTGGGGAATTATATGCTCTGACTCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTGCTCTGAATCTGTAGTGTTGATGATCGGTAGTTTATGTGCTATGAACTGCTAGGGTTAGTGAGTGATAATTGCTTATGTGCTGCATTCTAGGTGGGTTTGTTGTCTGTTGTTTTAGAATCAAGAGTTTTGCCCTGAACTGCTTGGTTCTACTAGCTGCATTAGGGATAGTAGTTGGACAAGCTCATGGGTTTTGATGGTACCCTAAGTTATTCTCCGAACTCGTTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTCCTAGTAAGGGCGTGGAAACTTCTCCTTAGTAGACTTGTTTTAAAATATTGAGGGGAAGCCTAAAAGAGAAAGACTAAAGAGGACAGTATAGCAGTGGGCTTAAGATGTTACAAATGGTATTAGAGCCGGACATTGGGCAGTGTGACAACGAGGACGTTGAGCCTCTAAAGGGGTGGATTGTGAGATCCCACATTAGTTGGAGAGAGGAATGAAACATTCTTTACATGGGTGTGAAAACCTCTCCCTTGGAGACGCATTCTAAAACTTTGAGGGGAAGCTCAGAATGGAAAGCCTGAATAAGACAATTTCTACTAGCAGTGGGCTTGGACGGTTGCAAATGGTATCAGAGCTAGATACTGGGCGGTGTGCCGACGAGAACGTTGAGCCTCCAAATGGGGTGAATTGTGAGATCCCACATTGGTTTGGGGAGGGGAACAAAGGATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGTGTTCTAAAACCTTGAGGGGAAGCTAAGAAAAGCCCAAAGAGAACAATATCGGCTAGCGGTGGGCTTGGGTTGTTACAAATGGTATCAGAGTCAGACGCCAGGCTGTGTGACAACGAAAACGCTGAGACCCCAAGGGGAGTGGAGCCGTCACACGAAAACGCTGAGACCCCAAGGGGAGTGGAGTCGTCACACGAAAACGCTGAGACCCCAAGGGGAGTGGAGCCCAAAAGGGAAAGCCCAAAGAGGACAACATCTGTTAGCAGTGGACTTGGGTTGCTACAAATGGTATCAGAGTCAAACACCGAGCGGTGTGACAATGAGGACGCTGATCCCCCAAGAGGAGTGGAGCCCAGGAGGGAAAGTTCAAAGAGGACACATCTACTAGCGGTGGACTTGGGTTGTTACAAATGGTATCAAACAAGACAAATGTGTAAGGTGCAAATGCACGAGGCTTTCTAGTCTTCTTAAGTGTTGAGAGCTTGGTTTAAAAGGTTAAAAATCTATTTTGAGATCGGCTTCTAGCATCTAGCAGGGAGAGGTTTCCACACTCTTGGAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTCGGATCCACAATCCACCTCCCTTGGGACCCAACGTCTTCGCTAGCACAACGCTCGGTGCCTGACATTGATACCATTTGTAACAATCCAAGCCCAGCATGAGTCCTCTTTGGACTTTCCCTTCCGGGCTTCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCTACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCAATGTAGGATCTCACGATCCACCCCTTTCGGGGTTCCAGCGTCCTCGCTGGCATACTGCTCGATGCCTAGCTCTGATACCATTTGTAACAGCCCAAGCCCACTGCTAGCAGATATTGTCCTCTTTAGGCTTTCCTTTCTAAGGTTCCCCTCAAAGTTTTAAAACGTGTCTTACTAGGAAGAGGTTTCCACACCTTATAAAGAATATTTTGTTCCCCTCTCCAACCAATATGGGATCTCACAGTAACTCATTTGCTTAAACTTTTGAGTTCGATCGTTGCATTACAGTGTTATAACGTGTCTTACTAGGAAGAGGTTTCCACACCTTATAAAGAATATTTTGTTCCCCTCTCCAACCAATATGGGATCTCACAGTAACTCATTTGCTTAAACTTTTGAGTTCGATCGTTGCATTACAGTGTTATTGAAGCTTTAATATTAGAGTACGACGAAACAACTAGAAATTCGATTTTCAGTGATTAAACTCAGTAGGTTTCTATGGTACTTGAAAAGAACAGTATATTTCAGCTGTTGGTTTACTCAACCACAGCTCCTTGAGTCTCTGAGGGTTCAAGGATGTTAACTGATCCAATGGCGTCGATAATGGGTTACGATGCAGTTGGCTTGAATCTGTGTTTTCGGACCGTGCAACAACTGCCTAATCCTACCATATTTAGTTCGAAACTCACGAAATTATGATCTTGTTCTTCCTCGTGTGTAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAATTTCTAGTCGATTAAGGAAAACACTCCTCCTTCATCTGTCTCCGTCGATAAGCTAAGACTATGACATGAACGAACGCGAATCAGTCCATTCGATTTTCTTTAACGACTTTTGAATCCCGATCAAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAGTATGTATACTGTTTTACAAGAACATATATATACATATATATGCATTTTCAGTATTGTTTTGACTGATCAGATCAGATTCAAGGCCTAAACCATACTTTGTTCTTGCTTGATCACCTTGTTAGATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCGCCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTAAGAGGAATCTGTTAGTTCTTGCAATGATCAAGTATGTTCTTGGTATTTAGCTGATTTGTGTTCTTCATCTGTGTTTGTTTGCTGACAGGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCACACGTTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACATTGTTGTTGTTTCTTTGCAAACTTTACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACATTCGGTCGGGATTTGAGCATCTGACTTACTTTTTTGGTCGAGAATTCAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACGATTTGTTA CAAGTTCATCAAAACCTCTCGATGATCTCGAATCGATGATATTGTTCACTTCAACAGTCTCAACCGACATGATTGTAATTTCAGTTTCACCTAAAGTACCTCATTCCGTTCCCTATATCTCAATGCCTGTCCTATTCTTGTCCACGTCTCTAGAATTGTGAATGGATAGAAACGAGACGATATCAACTACCCAGAACGTGTATTGTATGCATCGTTAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATATAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAAGAAAATGGAGAAATACGCAAATTCTAAGGAGCAAACGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCGCCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCACACGTTGTCGGATACATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACATTGTTGTTGTTTCTTTGCAAACTTTACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTCCTTAGGAATGTTTCATGAACATTCGGTCGGGATTTGAGCATCTGACTTACTTTTTTGGTCGAGAATTCAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAATCTTGTTACGATTTGTTA ATGGTGGTCTTGAAGCTACAAAGCGCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGCGCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCAAAGAAAATGGAGAAATACGCAAATTCTAAGGAGCAAACGAAGAAGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTGGTTAGTCGGCCCATCGGAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCGCCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAA MVVLKLQSAQFFTAPCEIRSRKRGNGQKFSRIIRCGIAEASGEPAPLGQKTKYNDGPFEKVFMTLFAKKMEKYANSKEQTKKIGWWDFLYDYERFVDASKRVMQGKNRMQQQLVVREVLLSMLPPGAPAQFRKLFPPTKWACEFNASITVPFFQWLVGPSEVVEVEVNGIKQRSGVHIKKCRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA Homology
BLAST of Cp4.1LG08g09190 vs. ExPASy Swiss-Prot
Match: R4HZ96 (Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.3e-41 Identity = 86/208 (41.35%), Postives = 126/208 (60.58%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy Swiss-Prot
Match: Q7XA78 (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 9.8e-40 Identity = 87/222 (39.19%), Postives = 125/222 (56.31%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy Swiss-Prot
Match: C7AU21 (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.4e-38 Identity = 80/208 (38.46%), Postives = 123/208 (59.13%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. NCBI nr
Match: XP_023540699.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 556 bits (1434), Expect = 2.41e-200 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. NCBI nr
Match: XP_022942554.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]) HSP 1 Score: 552 bits (1422), Expect = 1.63e-198 Identity = 262/265 (98.87%), Postives = 264/265 (99.62%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. NCBI nr
Match: XP_023005623.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]) HSP 1 Score: 551 bits (1421), Expect = 2.31e-198 Identity = 263/265 (99.25%), Postives = 264/265 (99.62%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. NCBI nr
Match: KAG6596672.1 (Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 550 bits (1417), Expect = 9.42e-198 Identity = 261/265 (98.49%), Postives = 264/265 (99.62%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. NCBI nr
Match: XP_008448557.1 (PREDICTED: beta-carotene isomerase D27, chloroplastic [Cucumis melo] >KAA0052966.1 beta-carotene isomerase D27 [Cucumis melo var. makuwa] >TYK11422.1 beta-carotene isomerase D27 [Cucumis melo var. makuwa]) HSP 1 Score: 496 bits (1276), Expect = 2.75e-176 Identity = 244/267 (91.39%), Postives = 250/267 (93.63%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy TrEMBL
Match: A0A6J1FRN3 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447551 PE=4 SV=1) HSP 1 Score: 552 bits (1422), Expect = 7.88e-199 Identity = 262/265 (98.87%), Postives = 264/265 (99.62%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy TrEMBL
Match: A0A6J1L2P3 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498565 PE=4 SV=1) HSP 1 Score: 551 bits (1421), Expect = 1.12e-198 Identity = 263/265 (99.25%), Postives = 264/265 (99.62%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy TrEMBL
Match: A0A5A7UFH7 (Beta-carotene isomerase D27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00760 PE=4 SV=1) HSP 1 Score: 496 bits (1276), Expect = 1.33e-176 Identity = 244/267 (91.39%), Postives = 250/267 (93.63%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy TrEMBL
Match: A0A1S3BKU4 (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490700 PE=4 SV=1) HSP 1 Score: 496 bits (1276), Expect = 1.33e-176 Identity = 244/267 (91.39%), Postives = 250/267 (93.63%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. ExPASy TrEMBL
Match: A0A0A0L682 (DUF4033 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002850 PE=4 SV=1) HSP 1 Score: 485 bits (1248), Expect = 2.46e-172 Identity = 239/268 (89.18%), Postives = 246/268 (91.79%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. TAIR 10
Match: AT1G64680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 387.1 bits (993), Expect = 1.1e-107 Identity = 182/236 (77.12%), Postives = 206/236 (87.29%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. TAIR 10
Match: AT1G03055.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 165.2 bits (417), Expect = 7.0e-41 Identity = 87/222 (39.19%), Postives = 125/222 (56.31%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. TAIR 10
Match: AT4G01995.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 132.9 bits (333), Expect = 3.8e-31 Identity = 82/241 (34.02%), Postives = 128/241 (53.11%), Query Frame = 0
BLAST of Cp4.1LG08g09190 vs. TAIR 10
Match: AT1G03055.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 79.0 bits (193), Expect = 6.6e-15 Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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