Cp4.1LG08g08430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g08430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nuclear transcription factor Y subunit B-9-like
Location	Cp4.1LG08: 6637329 .. 6637562 (-)
RNA-Seq Expression	Cp4.1LG08g08430
Synteny	Cp4.1LG08g08430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTAACGCATTTGGTTTCAGTTTTGAATGTATTGTTAACTACAAACAAGTCATCCTATGCCAACAACAACTACCAGCAATCAAATGGTAGAAACGTTGCGGCTAACTCCCCCGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGTCAACAATGTATTGTGCGGGAGCAGGACCAATACATGCCAATCACTAATGTGATACGCATCATGTGA

mRNA sequence

ATGAATCTAACGCATTTGGTTTCAGTTTTGAATGTATTGTTAACTACAAACAAGTCATCCTATGCCAACAACAACTACCAGCAATCAAATGGTAGAAACGTTGCGGCTAACTCCCCCGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGTCAACAATGTATTGTGCGGGAGCAGGACCAATACATGCCAATCACTAATGTGATACGCATCATGTGA

Coding sequence (CDS)

ATGAATCTAACGCATTTGGTTTCAGTTTTGAATGTATTGTTAACTACAAACAAGTCATCCTATGCCAACAACAACTACCAGCAATCAAATGGTAGAAACGTTGCGGCTAACTCCCCCGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGTCAACAATGTATTGTGCGGGAGCAGGACCAATACATGCCAATCACTAATGTGATACGCATCATGTGA

Protein sequence

MNLTHLVSVLNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVREQDQYMPITNVIRIM

Homology

[Close]

BLAST of Cp4.1LG08g08430 vs. NCBI nr
Match: XP_022952052.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 128 bits (321), Expect = 5.39e-35
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MNLTHLVSVLNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCI 60
          MNL HLVS LNVLLTTNKSS AN+N+QQSN RNVAA SPVTGSTPASIAATNNEQSQQCI
Sbjct: 1  MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCI 60

Query: 61 VREQDQYMPITNVIRIM 77
          VREQDQYMPI N+IRIM
Sbjct: 61 VREQDQYMPIANMIRIM 77

[Close]

BLAST of Cp4.1LG08g08430 vs. NCBI nr
Match: KAG6596759.1 (Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (293), Expect = 9.01e-31
Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MNLTHLVSVLNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCI 60
          MNL +LVS LN L+T NKSS A +N+QQS  RNVAA SPVTGSTPASIAATNNEQSQQCI
Sbjct: 1  MNLKYLVSALNELVTANKSSSAKSNHQQSKSRNVAAKSPVTGSTPASIAATNNEQSQQCI 60

Query: 61 VREQDQYMPITNVIRIM 77
          VREQDQYMPI NVIRIM
Sbjct: 61 VREQDQYMPIANVIRIM 77

[Close]

BLAST of Cp4.1LG08g08430 vs. NCBI nr
Match: XP_022944445.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 115 bits (289), Expect = 6.02e-30
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 8  SVLNVLLTTNKSSYANN----NYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVRE 67
          S LNVLLTTNKSS ANN    N+QQSN RNVAANSPVTGS PASIAATNNEQSQQCIVRE
Sbjct: 25 SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84

Query: 68 QDQYMPITNVIRIM 77
          QDQYMPI NVIRIM
Sbjct: 85 QDQYMPIANVIRIM 98

[Close]

BLAST of Cp4.1LG08g08430 vs. NCBI nr
Match: XP_023005517.1 (nuclear transcription factor Y subunit B-3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 114 bits (286), Expect = 1.54e-29
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 8  SVLNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVREQDQY 67
          S LNVLLTTNKSS+ANNN+QQSNGRN+AANS +TGST ASIAATNN +SQQCIVREQDQY
Sbjct: 25 SALNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQY 84

Query: 68 MPITNVIRIM 77
          MPI NVIRIM
Sbjct: 85 MPIANVIRIM 94

[Close]

BLAST of Cp4.1LG08g08430 vs. NCBI nr
Match: XP_023005516.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 113 bits (282), Expect = 8.32e-29
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 10  LNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVREQDQYMP 69
           LNVLLTTNKSS+ANNN+QQSNGRN+AANS +TGST ASIAATNN +SQQCIVREQDQYMP
Sbjct: 40  LNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMP 99

Query: 70  ITNVIRIM 77
           I NVIRIM
Sbjct: 100 IANVIRIM 107

[Close]

BLAST of Cp4.1LG08g08430 vs. ExPASy TrEMBL
Match: A0A6J1GJB5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111454760 PE=3 SV=1)

HSP 1 Score: 128 bits (321), Expect = 2.61e-35
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MNLTHLVSVLNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCI 60
          MNL HLVS LNVLLTTNKSS AN+N+QQSN RNVAA SPVTGSTPASIAATNNEQSQQCI
Sbjct: 1  MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCI 60

Query: 61 VREQDQYMPITNVIRIM 77
          VREQDQYMPI N+IRIM
Sbjct: 61 VREQDQYMPIANMIRIM 77

[Close]

BLAST of Cp4.1LG08g08430 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 115 bits (289), Expect = 2.92e-30
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 8  SVLNVLLTTNKSSYANN----NYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVRE 67
          S LNVLLTTNKSS ANN    N+QQSN RNVAANSPVTGS PASIAATNNEQSQQCIVRE
Sbjct: 25 SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84

Query: 68 QDQYMPITNVIRIM 77
          QDQYMPI NVIRIM
Sbjct: 85 QDQYMPIANVIRIM 98

[Close]

BLAST of Cp4.1LG08g08430 vs. ExPASy TrEMBL
Match: A0A6J1KTC3 (nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 114 bits (286), Expect = 7.48e-30
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 8  SVLNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVREQDQY 67
          S LNVLLTTNKSS+ANNN+QQSNGRN+AANS +TGST ASIAATNN +SQQCIVREQDQY
Sbjct: 25 SALNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQY 84

Query: 68 MPITNVIRIM 77
          MPI NVIRIM
Sbjct: 85 MPIANVIRIM 94

[Close]

BLAST of Cp4.1LG08g08430 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 113 bits (282), Expect = 4.03e-29
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 10  LNVLLTTNKSSYANNNYQQSNGRNVAANSPVTGSTPASIAATNNEQSQQCIVREQDQYMP 69
           LNVLLTTNKSS+ANNN+QQSNGRN+AANS +TGST ASIAATNN +SQQCIVREQDQYMP
Sbjct: 40  LNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMP 99

Query: 70  ITNVIRIM 77
           I NVIRIM
Sbjct: 100 IANVIRIM 107

[Close]

BLAST of Cp4.1LG08g08430 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.69e-12
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 12 VLLTTNKSSYANN----NYQQSNGRNVAANSPVTGSTPASIAAT--NNEQSQQCIVREQD 71
          +++T NK++  NN    N+  SNG     NS  T  +P S+AAT  NNEQ+QQC+VREQD
Sbjct: 1  MMVTPNKATSINNTPNSNHHLSNGGTATGNSSAT--SPLSVAATANNNEQNQQCVVREQD 60

Query: 72 QYMPITNVIRIM 77
          QYMPI NVIRIM
Sbjct: 61 QYMPIANVIRIM 70

[Close]

BLAST of Cp4.1LG08g08430 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 40.0 bits (92), Expect = 9.8e-04
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 0


Query: 38 SPVTGSTPASIAATNN-----EQSQQCIVREQDQYMPITNVIRIM 78
          +P+T S   + A   N     +Q   C+ REQDQYMPI NVIRIM
Sbjct: 29 TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIM 73

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08430 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g08430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952052.1	5.39e-35	88.31	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
KAG6596759.1	9.01e-31	81.82	Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subs...	[more]
XP_022944445.1	6.02e-30	86.49	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
XP_023005517.1	1.54e-29	85.71	nuclear transcription factor Y subunit B-3-like isoform X2 [Cucurbita maxima]	[more]
XP_023005516.1	8.32e-29	86.76	nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g08430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJB5	2.61e-35	88.31	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FYN7	2.92e-30	86.49	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTC3	7.48e-30	85.71	nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KV71	4.03e-29	86.76	nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A1S3BKV5	4.69e-12	55.56	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]

BLAST of Cp4.1LG08g08430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	9.8e-04	48.89	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08430.1	Cp4.1LG08g08430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding