Cp4.1LG08g08410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g08410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nuclear transcription factor Y subunit B-9-like
Location	Cp4.1LG08: 6626325 .. 6627068 (-)
RNA-Seq Expression	Cp4.1LG08g08410
Synteny	Cp4.1LG08g08410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTCTGCAACCGGAAGTGGAGATGACTTCCATAGCTACAGAAGACAACAACTCGAGCCAATCTCTAGTATTTTCATCTCCAAAATTTCCCTTTTACCCTTCGCTTACACCTTCTATCTCTACATATATTACGTATTGGTTTCCATTTGTCGCATGGATCAAGATCTCTTCATTTTCATTATTATATGAAAAGTGAAATAATTATAACATTAAGAATTGAATTTAAACTTTGTAATTATTGAGATTATTTAATTGTTTTAATTTACCGCGCCTCTTTCAATTAAAATCTTAAACTATGGTTAAGCGAAATTGATTTACTTATGAAAATTTAAACTTTTCATTATTTGTTTGACGAATATGAAGCATTTGGTTTCAGCCTTTGAATATATTGTTAGCCACAAACAAATCATCCTCCGCCAACAGCAACCACCATCAATCAAATGGTCGAAACGTTGCGGCCAACTCCCTTGCGACTGGCTCTACCCCTGCCTCAATCACTACCACCAGCAATGAGCAAAGCCAACAATGCATTGTGTGGGAGCAGGACCAATACATGCTTATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATTCAAGAATGCGTGTCTCAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATACCAAAGGGAGCAGCGTAAGACAGTGACGTATAAAAATAATTATTGA

mRNA sequence

ATGGTGCCTTTGAATATATTGTTAGCCACAAACAAATCATCCTCCGCCAACAGCAACCACCATCAATCAAATGGTCGAAACGTTGCGGCCAACTCCCTTGCGACTGGCTCTACCCCTGCCTCAATCACTACCACCAGCAATGAGCAAAGCCAACAATGCATTGTGTGGGAGCAGGACCAATACATGCTTATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATTCAAGAATGCGTGTCTCAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATACCAAAGGGAGCAGCGTAAGACAGTGACGTATAAAAATAATTATTGA

Coding sequence (CDS)

ATGGTGCCTTTGAATATATTGTTAGCCACAAACAAATCATCCTCCGCCAACAGCAACCACCATCAATCAAATGGTCGAAACGTTGCGGCCAACTCCCTTGCGACTGGCTCTACCCCTGCCTCAATCACTACCACCAGCAATGAGCAAAGCCAACAATGCATTGTGTGGGAGCAGGACCAATACATGCTTATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATTCAAGAATGCGTGTCTCAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATACCAAAGGGAGCAGCGTAAGACAGTGACGTATAAAAATAATTATTGA

Protein sequence

MVPLNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVTYKNNY

Homology

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-25
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 45  TSNEQSQQCIVWEQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEA 104
           TSN   ++C V EQD++M IANVIRIMRRILP+HAKISDD+KETIQECVS+YISFITGEA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 105 NERYQREQRKTVT 118
           NER QREQRKT+T
Sbjct: 106 NERCQREQRKTIT 118

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 14  SSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYMLIANVIRIMRR 73
           S  N + H +N   + ++ +  G+   +      +Q   C+  EQDQYM IANVIRIMR+
Sbjct: 17  SELNLDQHSNNPTPMTSSVVVAGAGDKN-NGIVVQQQPPCVAREQDQYMPIANVIRIMRK 76

Query: 74  ILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 118
            LPSHAKISDDAKETIQECVS+YISF+TGEANER QREQRKT+T
Sbjct: 77  TLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTIT 119

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.2e-17
Identity = 41/60 (68.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 57  EQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTV 116
           EQD+++ IANV RIM+R LP++AKIS DAKET+QECVS++ISFITGEA+++ QRE+RKT+
Sbjct: 22  EQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTI 81

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-16
Identity = 40/60 (66.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 57  EQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTV 116
           EQD+++ IANV RIM++ LP++AKIS DAKET+QECVS++ISFITGEA+++ QRE+RKT+
Sbjct: 21  EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTI 80

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-16
Identity = 42/79 (53.16%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 38  TPASITTTSNEQSQQCIVWEQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYI 97
           +P+S T  +N  ++     EQD+++ IANV RIM+++LP + KIS DAKET+QECVS++I
Sbjct: 22  SPSSKTNNNNNNNK-----EQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFI 81

Query: 98  SFITGEANERYQREQRKTV 117
           SF+TGEA+++ QRE+RKT+
Sbjct: 82  SFVTGEASDKCQREKRKTI 95

[Close]

BLAST of Cp4.1LG08g08410 vs. NCBI nr
Match: XP_023005517.1 (nuclear transcription factor Y subunit B-3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 181 bits (458), Expect = 1.01e-54
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN+LL TNKSS AN+NH QSNGRN+AANSL TGST ASI  T+N +SQQCIV EQDQYM 
Sbjct: 27  LNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMP 86

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 87  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 140

[Close]

BLAST of Cp4.1LG08g08410 vs. NCBI nr
Match: XP_023005516.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 181 bits (458), Expect = 1.49e-54
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN+LL TNKSS AN+NH QSNGRN+AANSL TGST ASI  T+N +SQQCIV EQDQYM 
Sbjct: 40  LNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMP 99

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 100 IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 153

[Close]

BLAST of Cp4.1LG08g08410 vs. NCBI nr
Match: XP_022944445.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 180 bits (456), Expect = 2.29e-54
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 4   LNILLATNKSSSAN----SNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQD 63
           LN+LL TNKSSSAN    SNH QSN RNVAANS  TGS PASI  T+NEQSQQCIV EQD
Sbjct: 27  LNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQD 86

Query: 64  QYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           QYM IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 87  QYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144

[Close]

BLAST of Cp4.1LG08g08410 vs. NCBI nr
Match: XP_022952052.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 176 bits (447), Expect = 2.81e-53
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN+LL TNKSS ANSNH QSN RNVAA S  TGSTPASI  T+NEQSQQCIV EQDQYM 
Sbjct: 10  LNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQYMP 69

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IAN+IRIMRRILPSHAKISDDAKE IQECVS+YISFIT EANE+ QREQRKTVT
Sbjct: 70  IANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVT 123

[Close]

BLAST of Cp4.1LG08g08410 vs. NCBI nr
Match: KAG6596759.1 (Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (445), Expect = 5.66e-53
Identity = 96/114 (84.21%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN L+  NKSSSA SNH QS  RNVAA S  TGSTPASI  T+NEQSQQCIV EQDQYM 
Sbjct: 10  LNELVTANKSSSAKSNHQQSKSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQYMP 69

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 70  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 123

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy TrEMBL
Match: A0A6J1KTC3 (nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 181 bits (458), Expect = 4.89e-55
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN+LL TNKSS AN+NH QSNGRN+AANSL TGST ASI  T+N +SQQCIV EQDQYM 
Sbjct: 27  LNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMP 86

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 87  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 140

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 181 bits (458), Expect = 7.20e-55
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN+LL TNKSS AN+NH QSNGRN+AANSL TGST ASI  T+N +SQQCIV EQDQYM 
Sbjct: 40  LNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMP 99

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 100 IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 153

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.11e-54
Identity = 100/118 (84.75%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 4   LNILLATNKSSSAN----SNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQD 63
           LN+LL TNKSSSAN    SNH QSN RNVAANS  TGS PASI  T+NEQSQQCIV EQD
Sbjct: 27  LNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQD 86

Query: 64  QYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           QYM IANVIRIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 87  QYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy TrEMBL
Match: A0A6J1GJB5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111454760 PE=3 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.36e-53
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 4   LNILLATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYML 63
           LN+LL TNKSS ANSNH QSN RNVAA S  TGSTPASI  T+NEQSQQCIV EQDQYM 
Sbjct: 10  LNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQYMP 69

Query: 64  IANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           IAN+IRIMRRILPSHAKISDDAKE IQECVS+YISFIT EANE+ QREQRKTVT
Sbjct: 70  IANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVT 123

[Close]

BLAST of Cp4.1LG08g08410 vs. ExPASy TrEMBL
Match: A0A5D3CPF3 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00390 PE=3 SV=1)

HSP 1 Score: 152 bits (383), Expect = 5.55e-44
Identity = 81/109 (74.31%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 9   ATNKSSSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYMLIANVI 68
           AT+ +S+ NSNHH SNG     NS AT     + T  +NEQ+QQC+V EQDQYM IANVI
Sbjct: 8   ATSINSTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVI 67

Query: 69  RIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 117
           RIMRRILPSHAKISDDAKETIQECVS+YISFITGEANER QREQRKTVT
Sbjct: 68  RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 116

[Close]

BLAST of Cp4.1LG08g08410 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 45  TSNEQSQQCIVWEQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEA 104
           TSN   ++C V EQD++M IANVIRIMRRILP+HAKISDD+KETIQECVS+YISFITGEA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 105 NERYQREQRKTVT 118
           NER QREQRKT+T
Sbjct: 106 NERCQREQRKTIT 118

[Close]

BLAST of Cp4.1LG08g08410 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 45  TSNEQSQQCIVWEQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEA 104
           TSN   ++C V EQD++M IANVIRIMRRILP+HAKISDD+KETIQECVS+YISFITGEA
Sbjct: 17  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 76

Query: 105 NERYQREQRKTVT 118
           NER QREQRKT+T
Sbjct: 77  NERCQREQRKTIT 89

[Close]

BLAST of Cp4.1LG08g08410 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-24
Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 14  SSANSNHHQSNGRNVAANSLATGSTPASITTTSNEQSQQCIVWEQDQYMLIANVIRIMRR 73
           S  N + H +N   + ++ +  G+   +      +Q   C+  EQDQYM IANVIRIMR+
Sbjct: 17  SELNLDQHSNNPTPMTSSVVVAGAGDKN-NGIVVQQQPPCVAREQDQYMPIANVIRIMRK 76

Query: 74  ILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTVT 118
            LPSHAKISDDAKETIQECVS+YISF+TGEANER QREQRKT+T
Sbjct: 77  TLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTIT 119

[Close]

BLAST of Cp4.1LG08g08410 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 42/79 (53.16%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 38  TPASITTTSNEQSQQCIVWEQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYI 97
           +P+S T  +N  ++     EQD+++ IANV RIM+++LP + KIS DAKET+QECVS++I
Sbjct: 22  SPSSKTNNNNNNNK-----EQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFI 81

Query: 98  SFITGEANERYQREQRKTV 117
           SF+TGEA+++ QRE+RKT+
Sbjct: 82  SFVTGEASDKCQREKRKTI 95

[Close]

BLAST of Cp4.1LG08g08410 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 40/60 (66.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 57  EQDQYMLIANVIRIMRRILPSHAKISDDAKETIQECVSQYISFITGEANERYQREQRKTV 116
           EQD+++ IANV RIM++ LP++AKIS DAKET+QECVS++ISFITGEA+++ QRE+RKT+
Sbjct: 21  EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTI 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W66	2.4e-25	79.45	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SFD8	1.7e-23	58.65	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	9.2e-17	68.33	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
O23310	2.0e-16	66.67	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SIT9	2.0e-16	53.16	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Cp4.1LG08g08410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005517.1	1.01e-54	85.09	nuclear transcription factor Y subunit B-3-like isoform X2 [Cucurbita maxima]	[more]
XP_023005516.1	1.49e-54	85.09	nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita maxima]	[more]
XP_022944445.1	2.29e-54	84.75	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
XP_022952052.1	2.81e-53	83.33	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
KAG6596759.1	5.66e-53	84.21	Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Cp4.1LG08g08410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTC3	4.89e-55	85.09	nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KV71	7.20e-55	85.09	nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1FYN7	1.11e-54	84.75	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GJB5	1.36e-53	83.33	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5D3CPF3	5.55e-44	74.31	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Cp4.1LG08g08410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47670.1	1.7e-26	79.45	nuclear factor Y, subunit B6	[more]
AT5G47670.2	1.7e-26	79.45	nuclear factor Y, subunit B6	[more]
AT1G21970.1	1.2e-24	58.65	Histone superfamily protein	[more]
AT2G13570.1	1.4e-17	53.16	nuclear factor Y, subunit B7	[more]
AT4G14540.1	1.4e-17	66.67	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 64..119 e-value: 1.2E-18 score: 67.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 50..120 e-value: 6.1E-20 score: 73.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 28..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..47
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 27..117
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 27..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08410.1	Cp4.1LG08g08410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding