Cp4.1LG08g08400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g08400
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nuclear transcription factor Y subunit B-9-like
Location	Cp4.1LG08: 6631549 .. 6632208 (-)
RNA-Seq Expression	Cp4.1LG08g08400
Synteny	Cp4.1LG08g08400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATTTGATTACAGCTTTGAATGTATTGTTAACGGCAAACAAGTCATCCTCTGCCAACAATACTCACAACACCAACCATCAGCAAGTAAATGGTCGTAACCTTGCGACCAACTCCCCTGTGACTGGCTCTACCCCTGCCTCGATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCGATCGCTAATGTGAGACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGACAGTAGAAGATGTCCTTTGGGCCATCGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAACCGCTACCGCGAGTCGGAGAGTGATCGAATCCGTACGGAACCAATCCTGAGGCGCAATGTGGATTATGGACCACAAGTAGGGATGGTACCACCGTATGGCCAGACGTTTCAAATAGGGCACGTCCCATCAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGGCGAGCTCGGGCAATGGTAATCAACTTTGA

mRNA sequence

ATGAAGCATTTGATTACAGCTTTGAATGTATTGTTAACGGCAAACAAGTCATCCTCTGCCAACAATACTCACAACACCAACCATCAGCAAGTAAATGGTCGTAACCTTGCGACCAACTCCCCTGTGACTGGCTCTACCCCTGCCTCGATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCGATCGCTAATGTGAGACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGACAGTAGAAGATGTCCTTTGGGCCATCGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAACCGCTACCGCGAGTCGGAGAGTGATCGAATCCGTACGGAACCAATCCTGAGGCGCAATGTGGATTATGGACCACAAGTAGGGATGGTACCACCGTATGGCCAGACGTTTCAAATAGGGCACGTCCCATCAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGGCGAGCTCGGGCAATGGTAATCAACTTTGA

Coding sequence (CDS)

ATGAAGCATTTGATTACAGCTTTGAATGTATTGTTAACGGCAAACAAGTCATCCTCTGCCAACAATACTCACAACACCAACCATCAGCAAGTAAATGGTCGTAACCTTGCGACCAACTCCCCTGTGACTGGCTCTACCCCTGCCTCGATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCGATCGCTAATGTGAGACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGACAGTAGAAGATGTCCTTTGGGCCATCGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAACCGCTACCGCGAGTCGGAGAGTGATCGAATCCGTACGGAACCAATCCTGAGGCGCAATGTGGATTATGGACCACAAGTAGGGATGGTACCACCGTATGGCCAGACGTTTCAAATAGGGCACGTCCCATCAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGGCGAGCTCGGGCAATGGTAATCAACTTTGA

Protein sequence

MKHLITALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL

Homology

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-46
Identity = 106/192 (55.21%), Postives = 127/192 (66.15%), Query Frame = 0


Query: 40  SPVTGSTPASIAATNN-----EQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAK 99
           +P+T S   + A   N     +Q   C+ REQDQYMPIANV RIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 100 ETIQECVSEYISFITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRE 159
           ETIQECVSEYISF+TGEANERCQREQRKT+T ED+LWA+ KLGFD+Y++PLTVF+NRYRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 160 SESDR---IRTEPILRRNV-------DYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYD 217
            E+DR   +R EP   R          +GP  G+ PP    +  G +   M    G YY 
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP--GPYGYGMLDQSMVMGGGRYYQ 208

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 53  TNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 112
           T+N   ++C VREQD++MPIANV RIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 113 NERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDR 160
           NERCQREQRKT+T EDVLWA+ KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 83/176 (47.16%), Postives = 115/176 (65.34%), Query Frame = 0


Query: 54  NNEQSQQCI-VREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 113
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 114 NERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRI------------ 173
           +++CQ+E+RKT+  +D+LWA+  LGF+DY+EPL V+L R+RE E +R             
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134

Query: 174 --RTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSG 215
             + + +      YG   GM   Y Q  Q  H  + M+ A GG  D G  GGA+SG
Sbjct: 135 EHQRDAVGDGGGFYGGGGGM--QYHQHHQFLHQQNHMYGATGGGSDSG--GGAASG 186

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-32
Identity = 61/96 (63.54%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 64  REQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 123
           REQD+++PIANV RIM+R LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 21  REQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 80

Query: 124 VTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDR 160
           +  +D+LWA+  LGF+DYI+PL ++L+++RE E ++
Sbjct: 81  INGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 3.6e-32
Identity = 60/96 (62.50%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 63  VREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 122
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 123 TVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESD 159
           T+  +D+LWA+  LGF+DYIEPL V+L +YRE E D
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of Cp4.1LG08g08400 vs. NCBI nr
Match: XP_023540511.1 (nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419 bits (1077), Expect = 3.85e-147
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 7   ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 66
           ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ
Sbjct: 27  ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 86

Query: 67  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 126
           DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV
Sbjct: 87  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 146

Query: 127 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 186
           EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF
Sbjct: 147 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 206

Query: 187 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL
Sbjct: 207 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 239

[Close]

BLAST of Cp4.1LG08g08400 vs. NCBI nr
Match: XP_023540510.1 (nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418 bits (1074), Expect = 1.76e-146
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 7   ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 66
           +LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ
Sbjct: 40  SLNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 99

Query: 67  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 126
           DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV
Sbjct: 100 DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 159

Query: 127 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 186
           EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF
Sbjct: 160 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 219

Query: 187 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL
Sbjct: 220 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 252

[Close]

BLAST of Cp4.1LG08g08400 vs. NCBI nr
Match: XP_022944445.1 (nuclear transcription factor Y subunit B-9-like [Cucurbita moschata])

HSP 1 Score: 390 bits (1003), Expect = 7.03e-136
Identity = 198/213 (92.96%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 7   ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 66
           ALNVLLT NKSSSANNTHN+NHQQ N RN+A NSPVTGS PASIAATNNEQSQQCIVREQ
Sbjct: 26  ALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQ 85

Query: 67  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 126
           DQYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 
Sbjct: 86  DQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTA 145

Query: 127 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 186
           EDVLWA+GKLGFDDYIEPLTVFLNRYRESESDR+RTEPILRRNVDYGPQVGMV PYGQTF
Sbjct: 146 EDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTF 205

Query: 187 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           QIGHVP GMFDAMGGYYDGGGNGG+SSGNG+QL
Sbjct: 206 QIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of Cp4.1LG08g08400 vs. NCBI nr
Match: KAG6596760.1 (Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381 bits (979), Expect = 2.77e-132
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 8   LNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQD 67
           LNVLLT NKSSSANNT N+NHQQ N R +A NSPVTGS PASIAATNN QSQQCIVREQD
Sbjct: 23  LNVLLTTNKSSSANNTRNSNHQQSNSRIIAANSPVTGSIPASIAATNNGQSQQCIVREQD 82

Query: 68  QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 127
           QYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT E
Sbjct: 83  QYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAE 142

Query: 128 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 187
           DVLWA+GKLGFDDY+EPLTVFLNRYRESESDR+RTEPILRRNVDYGPQVGMVPPYGQTFQ
Sbjct: 143 DVLWAMGKLGFDDYVEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVPPYGQTFQ 202

Query: 188 IGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           IGHVP+GMFDAMGGYYDGGGN G+SSGNG+QL
Sbjct: 203 IGHVPTGMFDAMGGYYDGGGNDGSSSGNGSQL 234

[Close]

BLAST of Cp4.1LG08g08400 vs. NCBI nr
Match: KAG6596759.1 (Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380 bits (976), Expect = 4.33e-132
Identity = 194/219 (88.58%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 1   MKHLITALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQ 60
           +K+L++ALN L+TANKSSSA +    NHQQ   RN+A  SPVTGSTPASIAATNNEQSQQ
Sbjct: 3   LKYLVSALNELVTANKSSSAKS----NHQQSKSRNVAAKSPVTGSTPASIAATNNEQSQQ 62

Query: 61  CIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQ 120
           CIVREQDQYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQ
Sbjct: 63  CIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQ 122

Query: 121 RKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVP 180
           RKTVT EDVLWA+GKLGFDDYIEPLTVFLNRYRESESDR+RTEPILRRNVDYGPQVGMVP
Sbjct: 123 RKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVP 182

Query: 181 PYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           PYGQTFQIGHVP+GMFDAMGGYYDGGGNGG+SSGNG+QL
Sbjct: 183 PYGQTFQIGHVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 217

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 3.41e-136
Identity = 198/213 (92.96%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 7   ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 66
           ALNVLLT NKSSSANNTHN+NHQQ N RN+A NSPVTGS PASIAATNNEQSQQCIVREQ
Sbjct: 26  ALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQ 85

Query: 67  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 126
           DQYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 
Sbjct: 86  DQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTA 145

Query: 127 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 186
           EDVLWA+GKLGFDDYIEPLTVFLNRYRESESDR+RTEPILRRNVDYGPQVGMV PYGQTF
Sbjct: 146 EDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTF 205

Query: 187 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           QIGHVP GMFDAMGGYYDGGGNGG+SSGNG+QL
Sbjct: 206 QIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy TrEMBL
Match: A0A6J1KTC3 (nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 371 bits (952), Expect = 1.74e-128
Identity = 192/213 (90.14%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 7   ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 66
           ALNVLLT NKSS ANN    NHQQ NGRN+A NS +TGST ASIAATNN +SQQCIVREQ
Sbjct: 26  ALNVLLTTNKSSFANN----NHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQ 85

Query: 67  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 126
           DQYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 
Sbjct: 86  DQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTA 145

Query: 127 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 186
           EDVLWA+GKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGMVPPYGQTF
Sbjct: 146 EDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 205

Query: 187 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           QIGHVP+GMFDAMGGYYDGGGNGG+SSGNG+QL
Sbjct: 206 QIGHVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 234

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 370 bits (949), Expect = 7.89e-128
Identity = 191/213 (89.67%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 7   ALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQCIVREQ 66
           +LNVLLT NKSS ANN    NHQQ NGRN+A NS +TGST ASIAATNN +SQQCIVREQ
Sbjct: 39  SLNVLLTTNKSSFANN----NHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQ 98

Query: 67  DQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTV 126
           DQYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 
Sbjct: 99  DQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTA 158

Query: 127 EDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 186
           EDVLWA+GKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGMVPPYGQTF
Sbjct: 159 EDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTF 218

Query: 187 QIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           QIGHVP+GMFDAMGGYYDGGGNGG+SSGNG+QL
Sbjct: 219 QIGHVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 247

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy TrEMBL
Match: A0A6J1GJB5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111454760 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 2.39e-122
Identity = 182/219 (83.11%), Postives = 197/219 (89.95%), Query Frame = 0


Query: 1   MKHLITALNVLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAATNNEQSQQ 60
           +KHL++ALNVLLT NKSS AN+    NHQQ N RN+A  SPVTGSTPASIAATNNEQSQQ
Sbjct: 3   LKHLVSALNVLLTTNKSSPANS----NHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQ 62

Query: 61  CIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQ 120
           CIVREQDQYMPIAN+ RIMRRILPSHAKISDDAKE IQECVSEYISFIT EANE+CQREQ
Sbjct: 63  CIVREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQ 122

Query: 121 RKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVP 180
           RKTVT EDVLWA+GKLGFD+YI+PL VFLN YRE ESDRIRTEPI+RRNVDYGP VGM+ 
Sbjct: 123 RKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMIS 182

Query: 181 PYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           PYGQTFQIGHVP+ MFDAMG YYDGGGNGG+SSGN +QL
Sbjct: 183 PYGQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 217

[Close]

BLAST of Cp4.1LG08g08400 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 335 bits (860), Expect = 7.72e-115
Identity = 172/212 (81.13%), Postives = 186/212 (87.74%), Query Frame = 0


Query: 10  VLLTANKSSSANNTHNTNHQQVNGRNLATNSPVTGSTPASIAAT--NNEQSQQCIVREQD 69
           +++T NK++S NNT N+NH   NG     NS  T   P S+AAT  NNEQ+QQC+VREQD
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATS--PLSVAATANNNEQNQQCVVREQD 60

Query: 70  QYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTVE 129
           QYMPIANV RIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT E
Sbjct: 61  QYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAE 120

Query: 130 DVLWAIGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQ 189
           DVLWA+GKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGM+ PYGQ FQ
Sbjct: 121 DVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQ 180

Query: 190 IGHVPSGMFDAMGGYYDGGGNGGASSGNGNQL 219
           IGHVP+GMFDAMGGYY GGG GG S+GNG+QL
Sbjct: 181 IGHVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Cp4.1LG08g08400 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-47
Identity = 106/192 (55.21%), Postives = 127/192 (66.15%), Query Frame = 0


Query: 40  SPVTGSTPASIAATNN-----EQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAK 99
           +P+T S   + A   N     +Q   C+ REQDQYMPIANV RIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 100 ETIQECVSEYISFITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRE 159
           ETIQECVSEYISF+TGEANERCQREQRKT+T ED+LWA+ KLGFD+Y++PLTVF+NRYRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 160 SESDR---IRTEPILRRNV-------DYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYD 217
            E+DR   +R EP   R          +GP  G+ PP    +  G +   M    G YY 
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP--GPYGYGMLDQSMVMGGGRYYQ 208

[Close]

BLAST of Cp4.1LG08g08400 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 181.4 bits (459), Expect = 7.8e-46
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 53  TNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 112
           T+N   ++C VREQD++MPIANV RIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 113 NERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDR 160
           NERCQREQRKT+T EDVLWA+ KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of Cp4.1LG08g08400 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 181.4 bits (459), Expect = 7.8e-46
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 53  TNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 112
           T+N   ++C VREQD++MPIANV RIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 17  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 76

Query: 113 NERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDR 160
           NERCQREQRKT+T EDVLWA+ KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 77  NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of Cp4.1LG08g08400 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 144.8 bits (364), Expect = 8.1e-35
Identity = 83/176 (47.16%), Postives = 115/176 (65.34%), Query Frame = 0


Query: 54  NNEQSQQCI-VREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 113
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 114 NERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRI------------ 173
           +++CQ+E+RKT+  +D+LWA+  LGF+DY+EPL V+L R+RE E +R             
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134

Query: 174 --RTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPSGMFDAMGGYYDGGGNGGASSG 215
             + + +      YG   GM   Y Q  Q  H  + M+ A GG  D G  GGA+SG
Sbjct: 135 EHQRDAVGDGGGFYGGGGGM--QYHQHHQFLHQQNHMYGATGGGSDSG--GGAASG 186

[Close]

BLAST of Cp4.1LG08g08400 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-33
Identity = 63/122 (51.64%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 42  VTGSTPASIAA-TNNEQSQQCIVREQDQYMPIANVRRIMRRILPSHAKISDDAKETIQEC 101
           V  + P S ++ TNN  +     +EQD+++PIANV RIM+++LP + KIS DAKET+QEC
Sbjct: 15  VAETNPGSPSSKTNNNNNNN---KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQEC 74

Query: 102 VSEYISFITGEANERCQREQRKTVTVEDVLWAIGKLGFDDYIEPLTVFLNRYRESESDRI 161
           VSE+ISF+TGEA+++CQRE+RKT+  +D++WAI  LGF+DY+ PL V+L +YR++E +++
Sbjct: 75  VSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKV 133

Query: 162 RT 163
            +
Sbjct: 135 NS 133

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFD8	1.5e-46	55.21	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84W66	1.1e-44	79.44	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	1.1e-33	47.16	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	2.8e-32	63.54	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q60EQ4	3.6e-32	62.50	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Cp4.1LG08g08400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540511.1	3.85e-147	100.00	nuclear transcription factor Y subunit B-9-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_023540510.1	1.76e-146	99.53	nuclear transcription factor Y subunit B-9-like isoform X1 [Cucurbita pepo subsp...	[more]
XP_022944445.1	7.03e-136	92.96	nuclear transcription factor Y subunit B-9-like [Cucurbita moschata]	[more]
KAG6596760.1	2.77e-132	91.04	Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subs...	[more]
KAG6596759.1	4.33e-132	88.58	Nuclear transcription factor Y subunit B-9, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Cp4.1LG08g08400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYN7	3.41e-136	92.96	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTC3	1.74e-128	90.14	nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KV71	7.89e-128	89.67	nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1GJB5	2.39e-122	83.11	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BKV5	7.72e-115	81.13	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]

BLAST of Cp4.1LG08g08400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	1.1e-47	55.21	Histone superfamily protein	[more]
AT5G47670.1	7.8e-46	79.44	nuclear factor Y, subunit B6	[more]
AT5G47670.2	7.8e-46	79.44	nuclear factor Y, subunit B6	[more]
AT5G47640.1	8.1e-35	47.16	nuclear factor Y, subunit B2	[more]
AT2G13570.1	3.4e-33	51.64	nuclear factor Y, subunit B7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 116..134 score: 29.55 coord: 135..153 score: 31.46 coord: 97..115 score: 43.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..55
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 39..185
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 51..170 e-value: 7.4E-40 score: 138.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 66..159
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 70..133 e-value: 1.5E-25 score: 89.2
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 39..185
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 100..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08400.1	Cp4.1LG08g08400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding