Cp4.1LG08g08140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g08140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	4-hydroxy-4-methyl-2-oxoglutarate aldolase
Location	Cp4.1LG08: 6478708 .. 6479211 (-)
RNA-Seq Expression	Cp4.1LG08g08140
Synteny	Cp4.1LG08g08140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTCCAGCAACAGCAGATATATGTGATGCAAATGCAGCACATGTCACAAGCGGAGATCTCCGAGTACTACAACAAAAATTCAAGATTTACGGGCAACGACGAGCGTTCTCAGGACCAATAGTGACAGTGAAGGTGTTTGAAGACAATGTTCTGGTAAGACAACTTCTTGAAAGCCAAGGTGAGGGGAGGGTTCTGGTGATTGATGGGAATGGAAGCAGGAGATGTGCATTGTTGGGAGGCAACCTTGGGCAGGTGGCTCAAAGCATGGGGTGGGCTGGTGTTGTCGTAAATGGCTGCATAAGAGATGTTGATGAGATCAATAACTGTGATGTTGGTGTGAGAGCATTGGGGACTAATCCATTGAAGTCGAACAAGAAAGGGTTGGGAGAGAAGCATGTGCCTGTTCATATTGGTGGGACTTTGATTCATGAAGGAGAGTGGCTGTATGCAGATAGTGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTGAATAG

mRNA sequence

ATGGCAGCTCCAGCAACAGCAGATATATGTGATGCAAATGCAGCACATGTCACAAGCGGAGATCTCCGAGTACTACAACAAAAATTCAAGATTTACGGGCAACGACGAGCGTTCTCAGGACCAATAGTGACAGTGAAGGTGTTTGAAGACAATGTTCTGGTAAGACAACTTCTTGAAAGCCAAGGTGAGGGGAGGGTTCTGGTGATTGATGGGAATGGAAGCAGGAGATGTGCATTGTTGGGAGGCAACCTTGGGCAGGTGGCTCAAAGCATGGGGTGGGCTGGTGTTGTCGTAAATGGCTGCATAAGAGATGTTGATGAGATCAATAACTGTGATGTTGGTGTGAGAGCATTGGGGACTAATCCATTGAAGTCGAACAAGAAAGGGTTGGGAGAGAAGCATGTGCCTGTTCATATTGGTGGGACTTTGATTCATGAAGGAGAGTGGCTGTATGCAGATAGTGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTGAATAG

Coding sequence (CDS)

ATGGCAGCTCCAGCAACAGCAGATATATGTGATGCAAATGCAGCACATGTCACAAGCGGAGATCTCCGAGTACTACAACAAAAATTCAAGATTTACGGGCAACGACGAGCGTTCTCAGGACCAATAGTGACAGTGAAGGTGTTTGAAGACAATGTTCTGGTAAGACAACTTCTTGAAAGCCAAGGTGAGGGGAGGGTTCTGGTGATTGATGGGAATGGAAGCAGGAGATGTGCATTGTTGGGAGGCAACCTTGGGCAGGTGGCTCAAAGCATGGGGTGGGCTGGTGTTGTCGTAAATGGCTGCATAAGAGATGTTGATGAGATCAATAACTGTGATGTTGGTGTGAGAGCATTGGGGACTAATCCATTGAAGTCGAACAAGAAAGGGTTGGGAGAGAAGCATGTGCCTGTTCATATTGGTGGGACTTTGATTCATGAAGGAGAGTGGCTGTATGCAGATAGTGATGGCATTTTGGTGTCCAAATTTGAGTTGTCTGTTGAATAG

Protein sequence

MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLESQGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGTNPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE

Homology

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy Swiss-Prot
Match: Q9FH13 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana OX=3702 GN=At5g56260 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-70
Identity = 128/166 (77.11%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAA ATA+ CD+NA  +++GDLR L   FKIYGQRR FSGPIVT+KVFEDNVLVR  LE+
Sbjct: 1   MAAFATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLET 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +GEG VLVIDG GS RCAL+GGNLGQ+AQ+ GW+G+VVNGC+RDVDEIN+CDVGVRALG+
Sbjct: 61  KGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           NPLKS KKG GEK+VPVHIGGTLI +GEWLYADSDGIL+SK ELSV
Sbjct: 121 NPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy Swiss-Prot
Match: Q9FFE0 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana OX=3702 GN=At5g16450 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.9e-61
Identity = 111/166 (66.87%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA   TA++CDAN   + SG LR LQ  F+IYG+R+ FSGP+VTVKVFEDN L+RQ +E 
Sbjct: 1   MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEE 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +G GRVLV+DG GS+RCA+LGGN    AQ+ GWAG+VVNGCIRDVDEIN CD+GVRAL +
Sbjct: 61  KGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           +P+K++KKGLGE+ VPV+I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy Swiss-Prot
Match: Q9M8R9 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.0e-59
Identity = 108/166 (65.06%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA   TA++CDAN   + SG LR LQ  F+IYG+R+ FSGP+VTVKVFEDN L+R  LE 
Sbjct: 1   MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEE 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +G GRVLV+DG GS RCA+LGGN    AQ+ GWAG++VNGCIRDVDEIN CD+GVRAL +
Sbjct: 61  KGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           +P+K++KKGLGE+ V ++I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy Swiss-Prot
Match: Q46ZV6 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=Reut_A1963 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-49
Identity = 84/159 (52.83%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 6   TADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLESQGEGR 65
           T D+CDAN   +  G LRV+   F+ +G+++AF+GP  T+K+FEDN LVR+ LES G+GR
Sbjct: 5   TTDLCDANEPRLADGTLRVMAPVFRAFGKQQAFAGPAATLKIFEDNSLVREALESPGQGR 64

Query: 66  VLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGTNPLKS 125
           VLV+DG GS RCAL+GGNLG +A+  GW G++VNGC+RD  E++ CD+G+RAL  +P KS
Sbjct: 65  VLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCDIGIRALAAHPQKS 124

Query: 126 NKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFEL 165
            K+G GE+ V V + G ++  G W+Y D+DG+LVS+ +L
Sbjct: 125 QKRGAGERDVAVQMPGAVVRPGNWIYVDADGVLVSEEKL 163

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy Swiss-Prot
Match: A9AHQ6 (Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Burkholderia multivorans (strain ATCC 17616 / 249) OX=395019 GN=Bmul_1223 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-48
Identity = 91/161 (56.52%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 5   ATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLESQGEG 64
           AT D+CDA+   + +G LRVLQ   + YG    F+GP  T+KVFEDN LVR  LE  G G
Sbjct: 4   ATTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQDGGG 63

Query: 65  RVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGTNPLK 124
           RVLV+DG  S RCAL+GGNLG +A+  GWAG+VV+GC+RD  E+  C VGV AL T+P K
Sbjct: 64  RVLVVDGGASLRCALVGGNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRK 123

Query: 125 SNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELS 166
           S+K+G GE+ VPV + GT I  GEW+YAD DG+LVS   L+
Sbjct: 124 SDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSATSLT 164

[Close]

BLAST of Cp4.1LG08g08140 vs. NCBI nr
Match: XP_023540534.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >XP_023540535.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >KAG7028314.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335 bits (859), Expect = 6.17e-116
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES
Sbjct: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167
           NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167

[Close]

BLAST of Cp4.1LG08g08140 vs. NCBI nr
Match: XP_022949864.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita moschata])

HSP 1 Score: 335 bits (858), Expect = 8.77e-116
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATADICDANAAHVTSGDLRVLQQKFK+YGQRRAFSGPIVTVKVFEDNVLVRQLLES
Sbjct: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKVYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167
           NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167

[Close]

BLAST of Cp4.1LG08g08140 vs. NCBI nr
Match: KAG6596786.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335 bits (859), Expect = 9.74e-116
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES
Sbjct: 14  MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 73

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT
Sbjct: 74  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 133

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167
           NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE
Sbjct: 134 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 180

[Close]

BLAST of Cp4.1LG08g08140 vs. NCBI nr
Match: XP_023005580.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita maxima] >XP_023005581.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita maxima])

HSP 1 Score: 333 bits (853), Expect = 5.08e-115
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATADICDANAAHV SGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES
Sbjct: 1   MAAPATADICDANAAHVISGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167
           NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167

[Close]

BLAST of Cp4.1LG08g08140 vs. NCBI nr
Match: XP_022143459.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Momordica charantia])

HSP 1 Score: 306 bits (785), Expect = 1.15e-104
Identity = 150/166 (90.36%), Postives = 158/166 (95.18%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA+PATADICDANAAHV SGDLRVLQ  F+IYGQRRAFSGP+ TVKVFEDNVLVRQLLES
Sbjct: 1   MASPATADICDANAAHVASGDLRVLQSVFEIYGQRRAFSGPVATVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLV+DGNGSRRCALLGGNLGQ+AQ+MGWAG+VVNGCIRDVDEIN CDVGVRALG 
Sbjct: 61  QGEGRVLVVDGNGSRRCALLGGNLGQLAQNMGWAGIVVNGCIRDVDEINVCDVGVRALGA 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166
           NPLKSNKKG+GEKHV V IGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGEKHVAVQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy TrEMBL
Match: A0A6J1GE55 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC111453129 PE=3 SV=1)

HSP 1 Score: 335 bits (858), Expect = 4.25e-116
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATADICDANAAHVTSGDLRVLQQKFK+YGQRRAFSGPIVTVKVFEDNVLVRQLLES
Sbjct: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKVYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167
           NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy TrEMBL
Match: A0A6J1KXS9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita maxima OX=3661 GN=LOC111498522 PE=3 SV=1)

HSP 1 Score: 333 bits (853), Expect = 2.46e-115
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATADICDANAAHV SGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES
Sbjct: 1   MAAPATADICDANAAHVISGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT
Sbjct: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167
           NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE
Sbjct: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSVE 167

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy TrEMBL
Match: A0A6J1CPD0 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC111013332 PE=3 SV=1)

HSP 1 Score: 306 bits (785), Expect = 5.56e-105
Identity = 150/166 (90.36%), Postives = 158/166 (95.18%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA+PATADICDANAAHV SGDLRVLQ  F+IYGQRRAFSGP+ TVKVFEDNVLVRQLLES
Sbjct: 1   MASPATADICDANAAHVASGDLRVLQSVFEIYGQRRAFSGPVATVKVFEDNVLVRQLLES 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           QGEGRVLV+DGNGSRRCALLGGNLGQ+AQ+MGWAG+VVNGCIRDVDEIN CDVGVRALG 
Sbjct: 61  QGEGRVLVVDGNGSRRCALLGGNLGQLAQNMGWAGIVVNGCIRDVDEINVCDVGVRALGA 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166
           NPLKSNKKG+GEKHV V IGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGEKHVAVQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy TrEMBL
Match: A0A0A0L5X9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G044520 PE=3 SV=1)

HSP 1 Score: 306 bits (784), Expect = 7.90e-105
Identity = 150/166 (90.36%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATAD+CDANAAHVT+GDLRVLQ KF+IYGQRRAFSG IVTVKVFEDNVLVRQLLE+
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +GEGRVLVIDGNGSRRCALLGGNLGQ+AQ+ GWAG+VVNGCIRDVDEINNCDVGVRALG 
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDVGVRALGA 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166
           NPLKSNKKG+GEKHV + IGGTLIHEGEWLYADSDGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGEKHVVLQIGGTLIHEGEWLYADSDGILVSKFELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. ExPASy TrEMBL
Match: A0A1S3BKF1 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC103490998 PE=3 SV=1)

HSP 1 Score: 305 bits (781), Expect = 2.26e-104
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAAPATAD+CDANAAHVT+GDLRVLQ KF+IYGQRRAFSG IVTVKVFEDNVLVRQLLE+
Sbjct: 1   MAAPATADVCDANAAHVTNGDLRVLQPKFEIYGQRRAFSGQIVTVKVFEDNVLVRQLLET 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +GEGRVLVIDGNGSRRCALLGGNLGQ+AQ+ GWAG+VVNGCIRDVDEINNCD+GVRALGT
Sbjct: 61  KGEGRVLVIDGNGSRRCALLGGNLGQLAQNNGWAGIVVNGCIRDVDEINNCDIGVRALGT 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 166
           NPLKSNKKG+G+KHV + IGGTLIHEGEWLYAD DGILVSKFELSV
Sbjct: 121 NPLKSNKKGMGDKHVVLQIGGTLIHEGEWLYADGDGILVSKFELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. TAIR 10
Match: AT5G56260.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-71
Identity = 128/166 (77.11%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MAA ATA+ CD+NA  +++GDLR L   FKIYGQRR FSGPIVT+KVFEDNVLVR  LE+
Sbjct: 1   MAAFATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLET 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +GEG VLVIDG GS RCAL+GGNLGQ+AQ+ GW+G+VVNGC+RDVDEIN+CDVGVRALG+
Sbjct: 61  KGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           NPLKS KKG GEK+VPVHIGGTLI +GEWLYADSDGIL+SK ELSV
Sbjct: 121 NPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. TAIR 10
Match: AT5G16450.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-62
Identity = 111/166 (66.87%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA   TA++CDAN   + SG LR LQ  F+IYG+R+ FSGP+VTVKVFEDN L+RQ +E 
Sbjct: 1   MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEE 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +G GRVLV+DG GS+RCA+LGGN    AQ+ GWAG+VVNGCIRDVDEIN CD+GVRAL +
Sbjct: 61  KGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           +P+K++KKGLGE+ VPV+I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. TAIR 10
Match: AT5G16450.2 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-62
Identity = 111/166 (66.87%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA   TA++CDAN   + SG LR LQ  F+IYG+R+ FSGP+VTVKVFEDN L+RQ +E 
Sbjct: 1   MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEE 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +G GRVLV+DG GS+RCA+LGGN    AQ+ GWAG+VVNGCIRDVDEIN CD+GVRAL +
Sbjct: 61  KGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           +P+K++KKGLGE+ VPV+I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166

[Close]

BLAST of Cp4.1LG08g08140 vs. TAIR 10
Match: AT3G02770.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-60
Identity = 108/166 (65.06%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MAAPATADICDANAAHVTSGDLRVLQQKFKIYGQRRAFSGPIVTVKVFEDNVLVRQLLES 60
           MA   TA++CDAN   + SG LR LQ  F+IYG+R+ FSGP+VTVKVFEDN L+R  LE 
Sbjct: 1   MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEE 60

Query: 61  QGEGRVLVIDGNGSRRCALLGGNLGQVAQSMGWAGVVVNGCIRDVDEINNCDVGVRALGT 120
           +G GRVLV+DG GS RCA+LGGN    AQ+ GWAG++VNGCIRDVDEIN CD+GVRAL +
Sbjct: 61  KGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALAS 120

Query: 121 NPLKSNKKGLGEKHVPVHIGGTLIHEGEWLYADSDGILVSKFELSV 167
           +P+K++KKGLGE+ V ++I GT I +GEWLYAD+DGILVS+ ELSV
Sbjct: 121 HPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH13	1.5e-70	77.11	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 OS=Arabidopsis thaliana OX...	[more]
Q9FFE0	2.9e-61	66.87	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 OS=Arabidopsis thaliana OX...	[more]
Q9M8R9	2.0e-59	65.06	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 OS=Arabidopsis thaliana OX...	[more]
Q46ZV6	1.5e-49	52.83	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cupriavidus pinatubonensi...	[more]
A9AHQ6	3.6e-48	56.52	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Burkholderia multivorans ...	[more]

BLAST of Cp4.1LG08g08140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540534.1	6.17e-116	100.00	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pep...	[more]
XP_022949864.1	8.77e-116	99.40	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita moschata]	[more]
KAG6596786.1	9.74e-116	100.00	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyro...	[more]
XP_023005580.1	5.08e-115	99.40	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita maxima] >XP_023...	[more]
XP_022143459.1	1.15e-104	90.36	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Momordica charantia]	[more]

BLAST of Cp4.1LG08g08140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE55	4.25e-116	99.40	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KXS9	2.46e-115	99.40	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1CPD0	5.56e-105	90.36	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0L5X9	7.90e-105	90.36	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G0...	[more]
A0A1S3BKF1	2.26e-104	89.16	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC1034909...	[more]

BLAST of Cp4.1LG08g08140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56260.1	1.1e-71	77.11	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.1	2.0e-62	66.87	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.2	2.0e-62	66.87	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT3G02770.1	1.5e-60	65.06	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	PFAM	PF03737	RraA-like	coord: 6..159 e-value: 9.3E-47 score: 158.9
IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	CDD	cd16841	RraA_family	coord: 7..160 e-value: 1.95819E-58 score: 177.266
IPR010203	Regulator of ribonuclease activity A	TIGRFAM	TIGR01935	TIGR01935	coord: 6..160 e-value: 1.2E-62 score: 208.2
None	No IPR available	GENE3D	3.50.30.40		coord: 2..167 e-value: 3.3E-52 score: 178.4
None	No IPR available	PANTHER	PTHR33254:SF22	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE	coord: 1..166
None	No IPR available	PANTHER	PTHR33254	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED	coord: 1..166
IPR036704	Ribonuclease E inhibitor RraA/RraA-like superfamily	SUPERFAMILY	89562	RraA-like	coord: 5..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08140.1	Cp4.1LG08g08140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0051252	regulation of RNA metabolic process
molecular_function	GO:0047443	4-hydroxy-4-methyl-2-oxoglutarate aldolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0008948	oxaloacetate decarboxylase activity
molecular_function	GO:0008428	ribonuclease inhibitor activity