Cp4.1LG08g07760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g07760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	Cp4.1LG08: 6131907 .. 6132239 (-)
RNA-Seq Expression	Cp4.1LG08g07760
Synteny	Cp4.1LG08g07760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGCAGAAATGACAATCTGACGTTCTACATCGTTTCGGAAATCGATTACATACAGATGTTTTGGTTGGACCAGAGTGCGACTGAGGAGGAGGAGGAGGAGGAGACGAAAATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGGGATAGAGAGGTTGAAGAAGGAGCAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTATAGTGTGTGTTATGATGAGATGAAGGACGGCGGGGAAGAAGTGAGCAGAATGCCCTTCGAACATGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGA

mRNA sequence

ATGGCGTGCAGAAATGACAATCTGACGTTCTACATCGTTTCGGAAATCGATTACATACAGATGTTTTGGTTGGACCAGAGTGCGACTGAGGAGGAGGAGGAGGAGGAGACGAAAATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGGGATAGAGAGGTTGAAGAAGGAGCAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTATAGTGTGTGTTATGATGAGATGAAGGACGGCGGGGAAGAAGTGAGCAGAATGCCCTTCGAACATGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGA

Coding sequence (CDS)

ATGGCGTGCAGAAATGACAATCTGACGTTCTACATCGTTTCGGAAATCGATTACATACAGATGTTTTGGTTGGACCAGAGTGCGACTGAGGAGGAGGAGGAGGAGGAGACGAAAATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGGGATAGAGAGGTTGAAGAAGGAGCAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTATAGTGTGTGTTATGATGAGATGAAGGACGGCGGGGAAGAAGTGAGCAGAATGCCCTTCGAACATGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGA

Protein sequence

MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKEQFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS

Homology

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.5e-05
Identity = 18/42 (42.86%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 69  DLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 111
           ++   +VC DE +D G +V +MP +HV+H+ C+L WL+ +NS
Sbjct: 212 EMNQCAVCMDEFED-GSDVKQMPCKHVFHQDCLLPWLELHNS 252

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 74  SVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 111
           +VC D+ ++ G E  +MP +H+YHK C+L WL+ +NS
Sbjct: 225 AVCMDDFEE-GTEAKQMPCKHLYHKDCLLPWLELHNS 260

[Close]

BLAST of Cp4.1LG08g07760 vs. NCBI nr
Match: XP_023539481.1 (uncharacterized protein LOC111800127 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233 bits (593), Expect = 5.26e-77
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKE 60
           MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKE
Sbjct: 16  MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKE 75

Query: 61  QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS
Sbjct: 76  QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 125

[Close]

BLAST of Cp4.1LG08g07760 vs. NCBI nr
Match: XP_023521699.1 (E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (580), Expect = 5.06e-75
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKE 60
           MACRNDNLTFYIVSEIDYIQMFWLDQSAT EEEEEETKIFDDFSGRRGAPETGIERLKKE
Sbjct: 16  MACRNDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKE 75

Query: 61  QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPF HVYHKSCVLTWLQRNNS
Sbjct: 76  QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFGHVYHKSCVLTWLQRNNS 125

[Close]

BLAST of Cp4.1LG08g07760 vs. NCBI nr
Match: XP_023539472.1 (uncharacterized protein LOC111800119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222 bits (565), Expect = 1.51e-72
Identity = 106/110 (96.36%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKE 60
           MACRNDNLTFYIVSEIDYIQMFWLDQSAT EEEEEETKIFDDFSGRRGAPETGIERLKKE
Sbjct: 29  MACRNDNLTFYIVSEIDYIQMFWLDQSATAEEEEEETKIFDDFSGRRGAPETGIERLKKE 88

Query: 61  QFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           QFDGFGGEDLGN SVCYDEMKDGGEEVSRMP  HVYHKSCVLTWLQRNNS
Sbjct: 89  QFDGFGGEDLGNCSVCYDEMKDGGEEVSRMPLGHVYHKSCVLTWLQRNNS 138

[Close]

BLAST of Cp4.1LG08g07760 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196 bits (499), Expect = 3.10e-61
Identity = 95/114 (83.33%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSAT----EEEEEEETKIFDDFSGRRGAPETGIER 60
           MAC N  +TFYIV+EIDYIQMFW+D SAT    EE+EEEET+IFDDFSGRRGAPET IER
Sbjct: 105 MACGNYEMTFYIVAEIDYIQMFWMDDSATAAEEEEDEEEETEIFDDFSGRRGAPETAIER 164

Query: 61  LKKEQFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           LKKE+FDGFGGEDLGN SVCYDEMKDGGEEVSR+P  HVYHKSCVLTWLQRNNS
Sbjct: 165 LKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNS 218

[Close]

BLAST of Cp4.1LG08g07760 vs. NCBI nr
Match: XP_023521698.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194 bits (492), Expect = 6.51e-61
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSATE----EEEEEETKIFDDFSGRRGAPETGIER 60
           MAC N  +TFYIV+EIDYIQMFW+D SAT     E+EEEET+IFDDFSGRRGAPET IER
Sbjct: 51  MACGNYEMTFYIVAEIDYIQMFWMDDSATGAEDGEDEEEETEIFDDFSGRRGAPETAIER 110

Query: 61  LKKEQFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           LKKE+FDGFGGEDLGN SVCYDEMKDGGEEVSR+P  HVYHKSCVLTWLQRNNS
Sbjct: 111 LKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNS 164

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy TrEMBL
Match: A0A5D3CVT7 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00140 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.12e-20
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 47  RGAPETGIERL-KKEQFDGFGGED---LGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVL 106
           RGAPE+ IERL  K++FDGF  E+   +G+ SVCY+E+K  G+EVSR+P  HVYHKSCVL
Sbjct: 87  RGAPESAIERLIMKQKFDGFNKEEEEEIGDCSVCYEELKGKGKEVSRIPCGHVYHKSCVL 146

Query: 107 TWLQRNNS 110
           TWLQ NNS
Sbjct: 147 TWLQINNS 154

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy TrEMBL
Match: A0A1S3B605 (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.12e-20
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 47  RGAPETGIERL-KKEQFDGFGGED---LGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVL 106
           RGAPE+ IERL  K++FDGF  E+   +G+ SVCY+E+K  G+EVSR+P  HVYHKSCVL
Sbjct: 87  RGAPESAIERLIMKQKFDGFNKEEEEEIGDCSVCYEELKGKGKEVSRIPCGHVYHKSCVL 146

Query: 107 TWLQRNNS 110
           TWLQ NNS
Sbjct: 147 TWLQINNS 154

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.61e-20
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFS--GRRGAPETGIERLK 60
           +A  N +L F+IV ++D I+M W+D             + +++S     GAP + IERL+
Sbjct: 111 LAAGNVDLNFHIVVDVDAIEMIWVDLDPF---------LIEEYSPPAMNGAPASAIERLQ 170

Query: 61  KEQFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           +++FDG   E+ G  SVC + +K G EEVSR+P  HVYHK C+L WLQ +NS
Sbjct: 171 RQEFDGLREEEEGECSVCCEALK-GEEEVSRIPCGHVYHKCCILRWLQMSNS 212

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.29e-19
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   MACRNDNLTFYIVSEIDYIQMFWLDQSATEEEEEEETKIFDDFSGRRGAPETGIERLKKE 60
           +A  N +L F+IV E+D I+M W+D      EE    ++        GAP + IERL+++
Sbjct: 111 LAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM-------NGAPASAIERLQRQ 170

Query: 61  QFDGFGGEDL-GNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 110
           +FDG   E+  G+ SVC + +K G EEVSR+P  HVYHK C+L WLQ +NS
Sbjct: 171 EFDGLREEEEEGDCSVCCEALK-GEEEVSRIPCGHVYHKCCILKWLQMSNS 213

[Close]

BLAST of Cp4.1LG08g07760 vs. ExPASy TrEMBL
Match: A0A5A7TNB0 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.41e-19
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 48  GAPETGIERLKKEQFDGFGGED-LGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQ 107
           GAPE+ IERL+KE+FD    E+ +G+ SVCY+E+K  G+EVSR+P  HVYHKSC+LTWLQ
Sbjct: 232 GAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQ 291

Query: 108 RNNS 110
            NNS
Sbjct: 292 INNS 295

[Close]

BLAST of Cp4.1LG08g07760 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.7e-06
Identity = 18/42 (42.86%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 69  DLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 111
           ++   +VC DE +D G +V +MP +HV+H+ C+L WL+ +NS
Sbjct: 212 EMNQCAVCMDEFED-GSDVKQMPCKHVFHQDCLLPWLELHNS 252

[Close]

BLAST of Cp4.1LG08g07760 vs. TAIR 10
Match: AT5G41430.1 (RING/U-box superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 8.8e-06
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 46  RRGAPETGIERLKKEQFDGFGGEDLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWL 105
           R    E   + ++KE FD  G       S+C +E++DG E +      HV+H+SC+ +WL
Sbjct: 96  RASIEEMEFKDIEKEGFDEIG------CSICLEELEDGHEIIRIKKCRHVFHRSCIDSWL 154

Query: 106 QRNNS 111
           ++N S
Sbjct: 156 KQNRS 154

[Close]

BLAST of Cp4.1LG08g07760 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-05
Identity = 17/42 (40.48%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 69  DLGNYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 111
           D+   +VC +E   GG + + +P +H+YHK C++ WL+ NNS
Sbjct: 220 DMSQCTVCMEEFIVGG-DATELPCKHIYHKDCIVPWLRLNNS 260

[Close]

BLAST of Cp4.1LG08g07760 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 72  NYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 111
           N  VC DE  + G E  +MP  H+YH  C++ WL ++NS
Sbjct: 189 NCPVCKDEF-ELGSEAKQMPCNHIYHSDCIVPWLVQHNS 226

[Close]

BLAST of Cp4.1LG08g07760 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 72  NYSVCYDEMKDGGEEVSRMPFEHVYHKSCVLTWLQRNNS 111
           N  VC DE  + G E  +MP  H+YH  C++ WL ++NS
Sbjct: 189 NCPVCKDEF-ELGSEAKQMPCNHIYHSDCIVPWLVQHNS 226

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	9.5e-05	42.86	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
P0CH30	4.7e-04	45.95	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]

BLAST of Cp4.1LG08g07760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539481.1	5.26e-77	100.00	uncharacterized protein LOC111800127 [Cucurbita pepo subsp. pepo]	[more]
XP_023521699.1	5.06e-75	98.18	E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo]	[more]
XP_023539472.1	1.51e-72	96.36	uncharacterized protein LOC111800119 [Cucurbita pepo subsp. pepo]	[more]
XP_023539480.1	3.10e-61	83.33	E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521698.1	6.51e-61	82.46	E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG08g07760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVT7	4.12e-20	64.71	RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3B605	4.12e-20	64.71	RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1	[more]
A0A6J1G809	7.61e-20	41.96	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1G7Z5	4.29e-19	44.14	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5A7TNB0	8.41e-19	64.06	RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cp4.1LG08g07760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19950.1	6.7e-06	42.86	RING/U-box superfamily protein	[more]
AT5G41430.1	8.8e-06	33.85	RING/U-box superfamily protein	[more]
AT1G60360.1	2.6e-05	40.48	RING/U-box superfamily protein	[more]
AT2G40830.2	1.7e-04	43.59	RING-H2 finger C1A	[more]
AT2G40830.1	1.7e-04	43.59	RING-H2 finger C1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..110 e-value: 7.2E-8 score: 33.9
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 74..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07760.1	Cp4.1LG08g07760.1	mRNA