Cp4.1LG08g07750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g07750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionE3 ubiquitin-protein ligase MBR2-like
LocationCp4.1LG08: 6139173 .. 6139868 (-)
RNA-Seq ExpressionCp4.1LG08g07750
SyntenyCp4.1LG08g07750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAGCAGATTCGGGCACATTCCGCTGCAATCTCCACCGCTACGACGGTCTCGATCAGCTTCTCCAAATTCGAATAGGTCATTCAAGCCGTCTGCTCACCGAATCGCCGTTCTCCGGATATGCTTTCAATATCGTCCATGGAACTCTCCCTACTACAATGGCAGATGCTCAATTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTATTTTGCCGAGCTTACATCGAGGAATTTCTAAGTTCTTACAACCTTGGCGCCACAATAAAAAACGCCATTGCTCGGAGTATTGCCTCGTTCGTCGTTCAAATGGCGTGCGAAAACTACGAGATGAAGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGATGGACGACAGTGCGACTGCGGCGGAGGAGGAGGATGAGGATGAGGAGGAAGAGGAGGAGGAGACGGAGATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGCTGAAGGAGAAATTCGATGAATTTGGGGGAGAAGATTTGAGGAATTGTAGTGTGTGTTATGATGAGATGAAGGATGGCGGGGAAGAAGTGAGCAGAATCCCCTGCGGACATGTGTATCATAAATATTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTCTGTGCACAAAGAAACTAGAAGTTTAA

mRNA sequence

ATGTCTTTAGCAGATTCGGGCACATTCCGCTGCAATCTCCACCGCTACGACGGTCTCGATCAGCTTCTCCAAATTCGAATAGGTCATTCAAGCCGTCTGCTCACCGAATCGCCGTTCTCCGGATATGCTTTCAATATCGTCCATGGAACTCTCCCTACTACAATGGCAGATGCTCAATTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTATTTTGCCGAGCTTACATCGAGGAATTTCTAAGTTCTTACAACCTTGGCGCCACAATAAAAAACGCCATTGCTCGGAGTATTGCCTCGTTCGTCGTTCAAATGGCGTGCGAAAACTACGAGATGAAGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGATGGACGACAGTGCGACTGCGGCGGAGGAGGAGGATGAGGATGAGGAGGAAGAGGAGGAGGAGACGGAGATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGCTGAAGGAGAAATTCGATGAATTTGGGGGAGAAGATTTGAGGAATTGTAGTGTGTGTTATGATGAGATGAAGGATGGCGGGGAAGAAGTGAGCAGAATCCCCTGCGGACATGTGTATCATAAATATTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTCTGTGCACAAAGAAACTAGAAGTTTAA

Coding sequence (CDS)

ATGTCTTTAGCAGATTCGGGCACATTCCGCTGCAATCTCCACCGCTACGACGGTCTCGATCAGCTTCTCCAAATTCGAATAGGTCATTCAAGCCGTCTGCTCACCGAATCGCCGTTCTCCGGATATGCTTTCAATATCGTCCATGGAACTCTCCCTACTACAATGGCAGATGCTCAATTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTATTTTGCCGAGCTTACATCGAGGAATTTCTAAGTTCTTACAACCTTGGCGCCACAATAAAAAACGCCATTGCTCGGAGTATTGCCTCGTTCGTCGTTCAAATGGCGTGCGAAAACTACGAGATGAAGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGATGGACGACAGTGCGACTGCGGCGGAGGAGGAGGATGAGGATGAGGAGGAAGAGGAGGAGGAGACGGAGATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGCTGAAGGAGAAATTCGATGAATTTGGGGGAGAAGATTTGAGGAATTGTAGTGTGTGTTATGATGAGATGAAGGATGGCGGGGAAGAAGTGAGCAGAATCCCCTGCGGACATGTGTATCATAAATATTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTCTGTGCACAAAGAAACTAGAAGTTTAA

Protein sequence

MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQFPLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEIDYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLEV
Homology
BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-10
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 157 GRRGAP---ETAIERLKE-KFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCV 216
           GRRGAP   ++AIE L+  +     GE +  C+VC D M   GE   ++PCGH YH  C+
Sbjct: 226 GRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMV-MGETGKKLPCGHCYHGDCI 285

Query: 217 LTWLQRNNSCPLCTKKLE 231
           + WL   NSCP+C  +LE
Sbjct: 286 VPWLGTRNSCPVCRFQLE 302

BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 180 DLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           ++  C+VC DE +D G +V ++PC HV+H+ C+L WL+ +NSCP+C  +L
Sbjct: 212 EMNQCAVCMDEFED-GSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0

Query: 150 EIFDDFSG---RRG---APETAIERLKEKFDEFGGEDLR----NCSVCYDEMKDGGEEVS 209
           E+F+  S    RRG   AP +AI+ L     +     LR    NC VC DE  + G E  
Sbjct: 148 ELFEQLSAGTTRRGPPPAPRSAIDALPT--IKIAQRHLRSSDSNCPVCKDEF-ELGSEAK 207

Query: 210 RIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           ++PC H+YH  C++ WL ++NSCP+C ++L
Sbjct: 208 QMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 180 DLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           +   C+VC D+ ++ G E  ++PC H+YHK C+L WL+ +NSCP+C  +L
Sbjct: 220 EFNQCAVCMDDFEE-GTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHEL 268

BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: Q07G42 (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 0

Query: 153 DDFSGRRGAPETAIERLKEKFDEFGGED-LRNCSVCYDEMKDGGEEVSRIPCGHVYHKYC 212
           DD    RG  +  I+ L  +   FG  D L+ CSVC  E  + G ++ ++PC H YH +C
Sbjct: 555 DDDDQPRGLTKEQIDNLSTR--NFGENDALKTCSVCITEYTE-GNKLRKLPCSHEYHVHC 614

Query: 213 VLTWLQRNNSCPLCTKKLEV 232
           +  WL  N++CP+C + + V
Sbjct: 615 IDRWLSENSTCPICRRAVLV 631

BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539483.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469 bits (1207), Expect = 7.11e-167
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF
Sbjct: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI
Sbjct: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKFDEFGGED 180
           DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKFDEFGGED
Sbjct: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKFDEFGGED 180

Query: 181 LRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLEV 231
           LRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLEV
Sbjct: 181 LRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLEV 231

BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412 bits (1060), Expect = 1.64e-144
Identity = 209/231 (90.48%), Postives = 212/231 (91.77%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           MSLAD  TFRCNLHRYDG DQLLQIRIGHSSRLLT SPFSGY FNIVH TLPTTMADAQF
Sbjct: 1   MSLADLATFRCNLHRYDGPDQLLQIRIGHSSRLLTGSPFSGYPFNIVHETLPTTMADAQF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFC+AYI+EFLSSYNLGATIKNAIAR IASFVVQMAC NYEM FYIVAEI
Sbjct: 61  PLPLRELEDPLFCQAYIKEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLK-EKFDEFGGE 180
           DYIQMFWMDDSATAAEEE    E+EEEETEIFDDFSGRRGAPETAIERLK EKFD FGGE
Sbjct: 121 DYIQMFWMDDSATAAEEE----EDEEEETEIFDDFSGRRGAPETAIERLKKEKFDGFGGE 180

Query: 181 DLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLE 230
           DL NCSVCYDEMKDGGEEVSRIPCGHVYHK CVLTWLQRNNSCPLC  KLE
Sbjct: 181 DLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRNKLE 227

BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401 bits (1030), Expect = 9.41e-140
Identity = 205/239 (85.77%), Postives = 213/239 (89.12%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           MSLADS TFRCNLHRYD  DQLLQIRI HS+RLLT SPFSGY FNIVH TLPTTMADAQF
Sbjct: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFC+AYIEEFLSSYNLGATIKNAIAR IASFVVQMAC NYEM FYIVAEI
Sbjct: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETE--------IFDDFSGRRGAPETAIERLK-E 180
           DYIQMFW+D SA AAEEE+E+EE+EEEE +        IFD+FSGRRGAPETAIERLK E
Sbjct: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180

Query: 181 KFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLE 230
           KFD FGGEDL NCSVCYDEMKDGGEEVSRIPCGHVYHK CVLTWLQRNNSCPLC KKLE
Sbjct: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLE 239

BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539485.1 (RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372 bits (955), Expect = 1.89e-128
Identity = 192/231 (83.12%), Postives = 200/231 (86.58%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           MS ADS TFRCNLHRYDGL QLLQIRIGHS+RLL  S F GY FNIV+ TL T MADAQF
Sbjct: 1   MSFADSITFRCNLHRYDGLYQLLQIRIGHSTRLLIGSSFPGYPFNIVYETLTTRMADAQF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFCRAYIEEFLSSYNL ATI NAIA+ I SFVVQMAC NYEM FYIVAEI
Sbjct: 61  PLPLRELEDPLFCRAYIEEFLSSYNLDATINNAIAQRITSFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLK-EKFDEFGGE 180
           DYIQMFW+D SA A EEE+E+E+EEEE   IFD+FS RRGAPETAIERLK EKFD FGGE
Sbjct: 121 DYIQMFWLDQSAIATEEEEEEEDEEEEVEVIFDNFSERRGAPETAIERLKKEKFDGFGGE 180

Query: 181 DLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLE 230
           DL NCSVCYDEMKDGGEEVSRI CGHVYHK CVLTWLQRNNSCPL  KKLE
Sbjct: 181 DLGNCSVCYDEMKDGGEEVSRILCGHVYHKSCVLTWLQRNNSCPLWRKKLE 231

BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: KAG6596836.1 (hypothetical protein SDJN03_10016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 366 bits (940), Expect = 4.66e-126
Identity = 189/238 (79.41%), Postives = 199/238 (83.61%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           MS ADS TF CNLHRYDG DQLLQIRIGHS RL   SP  GY FNIV+ TL T   DAQF
Sbjct: 1   MSFADSVTFTCNLHRYDGPDQLLQIRIGHSRRLFIGSPLPGYPFNIVYETLTTITVDAQF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
            LPLRELEDPLFCRAYIEEFLSSYNL ATI NAIA+ IASFVVQMAC NYEM FYIVAEI
Sbjct: 61  SLPLRELEDPLFCRAYIEEFLSSYNLDATINNAIAQRIASFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETE-------IFDDFSGRRGAPETAIERLK-EK 180
           DYIQMFW+D SA AAEEE+E+EEEE+EE E       IFD+FS RRGAPETAIERLK EK
Sbjct: 121 DYIQMFWLDQSAIAAEEEEEEEEEEDEEEEEEEEEEVIFDNFSERRGAPETAIERLKKEK 180

Query: 181 FDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLE 230
           FD FGGEDL NCSVCYDEMK+GGEE+ RIPCGHVYHK CVLTWLQRNNSCPLC KK+E
Sbjct: 181 FDGFGGEDLGNCSVCYDEMKEGGEELIRIPCGHVYHKSCVLTWLQRNNSCPLCRKKIE 238

BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 1.13e-61
Identity = 108/238 (45.38%), Postives = 140/238 (58.82%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           M  A+S T R +L R DG DQLLQ+R+G+SSRL++ SP+SG  ++I+  T  T +AD  F
Sbjct: 1   MLFANSSTLRYSLRRKDGTDQLLQVRLGYSSRLISRSPYSGLPYDILEETPSTLIADTLF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS NL +   N IA+ I S V Q A  +Y++KF +VA+I
Sbjct: 61  PLPLRELEDPLFCHAYLVELVSSLNLDSISCNPIAQKITSLVTQWAAVDYDLKFQLVADI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKF------- 180
           DYIQMFW ++S                          RRG        L+E         
Sbjct: 121 DYIQMFWREESRGPV----------------------RRGVMVEEKVVLEEAGVAATSAA 180

Query: 181 --DEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 229
                GGE+   C  CYDE K G +EV++IPCGH++HK C+LTW   +NSCPLC  KL
Sbjct: 181 GKQGMGGEECSVCYECYDEEKGGDKEVAKIPCGHMFHKSCILTWFLCSNSCPLCRAKL 216

BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.46e-61
Identity = 111/240 (46.25%), Postives = 146/240 (60.83%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           M  A++ T R +L R  G DQLLQ+R+G+SSRL++ SP +G  ++I+  T  T MADA F
Sbjct: 1   MPFANASTLRYSLRRNHGADQLLQLRLGYSSRLISRSPSAGLPYDILEETPSTPMADALF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS+NLG+   N I + I SFV Q A  +Y+ KF +VA+I
Sbjct: 61  PLPLRELEDPLFCHAYLVELVSSFNLGSVTWNPIVQKITSFVTQWAAVDYDAKFQLVADI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGA--------PETAIERLKEK 180
           DYIQMFWM+    +                        RG          ET +   +++
Sbjct: 121 DYIQMFWMEKHRGSV----------------------GRGVMVEERVVLEETGVAAAEKQ 180

Query: 181 FDEFGGEDLRNCSVCYD--EMKDGGE-EVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 229
               GGE+   CSVCY+  E + GGE EV++IPCGH +HK C+LTW QR+NSCPLC  KL
Sbjct: 181 --GIGGEE---CSVCYESYEAEKGGEKEVAKIPCGHAFHKSCILTWFQRSNSCPLCRAKL 213

BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 8.13e-60
Identity = 107/235 (45.53%), Postives = 141/235 (60.00%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           M  A+S T R +L R+ G DQLLQ+R+G+SSRL+++SP +G  ++I+  T  T +ADA F
Sbjct: 1   MLFANSSTLRYSLRRHHGTDQLLQVRLGYSSRLISQSPSAGLPYDILEETPLTPIADALF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS NL +   N I + I S V Q A  +Y+ KF +V +I
Sbjct: 61  PLPLRELEDPLFCHAYLVELVSSLNLDSMSCNPIIQKITSLVTQWAAVDYDAKFQLVVDI 120

Query: 121 DYIQMFWMDDS------ATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKFD 180
           DYIQMFW ++S          EE             I  D +G       A    +    
Sbjct: 121 DYIQMFWREESRGPVRRGVMVEER------------IVLDKAGVAATVAAAAAGKQG--- 180

Query: 181 EFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 229
             GGE+   C  CYDE K G +EV++IPCGH++HK C+LTW Q +NSCPLC  KL
Sbjct: 181 -MGGEECSVCYECYDEEKGGDKEVAKIPCGHMFHKSCILTWFQCSNSCPLCRAKL 219

BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 5.03e-57
Identity = 110/238 (46.22%), Postives = 142/238 (59.66%), Query Frame = 0

Query: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60
           M LA++ T R +L R  G DQ L+ R+ +SSRL++ SP +G  ++I+  T  T MADA F
Sbjct: 1   MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALF 60

Query: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS NL +   N I + I S V Q A  +Y+ KF +VA+I
Sbjct: 61  PLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADI 120

Query: 121 DYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKE------KFD 180
           DYIQMFWM+    +                      GR    E  +  LKE      +  
Sbjct: 121 DYIQMFWMEKRPGSV---------------------GRGVMVEEKVV-LKEAEVAAAEKQ 180

Query: 181 EFGGEDLRNCSVCYD--EMKDGGE-EVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 229
             GGE+   CSVCY+  E + GGE EV++IPCGHV+HK C+LTW QR+NSCPLC  KL
Sbjct: 181 GIGGEE---CSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 213

BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 1.38e-42
Identity = 91/242 (37.60%), Postives = 138/242 (57.02%), Query Frame = 0

Query: 1   MSLADSGTFRCN--------LHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLP 60
           ++  DS +F+C+        L  ++   Q +++R+GHSS L++ S     +  I+  T  
Sbjct: 3   LTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRS-----SRQILQQTPS 62

Query: 61  TTMADAQFPLPLRELEDPLFC-RAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYE 120
           T M DA FP  LR+L  P F  ++++  FLSS+++   + N I   I+SF + +A  N +
Sbjct: 63  TPMGDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVD 122

Query: 121 MKFYIVAEIDYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFS--GRRGAPETAIERL 180
           + F+IV ++D I+M W+D                     + +++S     GAP +AIERL
Sbjct: 123 LNFHIVVDVDAIEMIWVDLDPF-----------------LIEEYSPPAMNGAPASAIERL 182

Query: 181 -KEKFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKK 230
            +++FD    E+   CSVC + +K G EEVSRIPCGHVYHK C+L WLQ +NSCPLC  K
Sbjct: 183 QRQEFDGLREEEEGECSVCCEALK-GEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTK 221

BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 157 GRRGAP---ETAIERLKE-KFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCV 216
           GRRGAP   ++AIE L+  +     GE +  C+VC D M   GE   ++PCGH YH  C+
Sbjct: 226 GRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMV-MGETGKKLPCGHCYHGDCI 285

Query: 217 LTWLQRNNSCPLCTKKLE 231
           + WL   NSCP+C  +LE
Sbjct: 286 VPWLGTRNSCPVCRFQLE 302

BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-10
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 180 DLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           D+  C+VC +E   GG + + +PC H+YHK C++ WL+ NNSCP+C + L
Sbjct: 220 DMSQCTVCMEEFIVGG-DATELPCKHIYHKDCIVPWLRLNNSCPICRRDL 268

BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-10
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 180 DLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           ++  C+VC DE +D G +V ++PC HV+H+ C+L WL+ +NSCP+C  +L
Sbjct: 212 EMNQCAVCMDEFED-GSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-10
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0

Query: 150 EIFDDFSG---RRG---APETAIERLKEKFDEFGGEDLR----NCSVCYDEMKDGGEEVS 209
           E+F+  S    RRG   AP +AI+ L     +     LR    NC VC DE  + G E  
Sbjct: 148 ELFEQLSAGTTRRGPPPAPRSAIDALPT--IKIAQRHLRSSDSNCPVCKDEF-ELGSEAK 207

Query: 210 RIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           ++PC H+YH  C++ WL ++NSCP+C ++L
Sbjct: 208 QMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-10
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0

Query: 150 EIFDDFSG---RRG---APETAIERLKEKFDEFGGEDLR----NCSVCYDEMKDGGEEVS 209
           E+F+  S    RRG   AP +AI+ L     +     LR    NC VC DE  + G E  
Sbjct: 148 ELFEQLSAGTTRRGPPPAPRSAIDALPT--IKIAQRHLRSSDSNCPVCKDEF-ELGSEAK 207

Query: 210 RIPCGHVYHKYCVLTWLQRNNSCPLCTKKL 230
           ++PC H+YH  C++ WL ++NSCP+C ++L
Sbjct: 208 QMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SPL25.4e-1044.87E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV... [more]
Q8LPN74.6e-0946.00E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
O221971.0e-0838.89Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
P0CH301.3e-0844.00E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
Q07G421.3e-0836.25E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV... [more]
Match NameE-valueIdentityDescription
XP_023539483.17.11e-167100.00E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
XP_023539480.11.64e-14490.48E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
XP_023539471.19.41e-14085.77uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo][more]
XP_023539485.11.89e-12883.12RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo][more]
KAG6596836.14.66e-12679.41hypothetical protein SDJN03_10016, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1G7R81.13e-6145.38E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451... [more]
A0A6J1G7L11.46e-6146.25NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE... [more]
A0A6J1L1918.13e-6045.53E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1L1865.03e-5746.22NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4... [more]
A0A6J1G8091.38e-4237.60probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
Match NameE-valueIdentityDescription
AT5G64920.13.8e-1144.87COP1-interacting protein 8 [more]
AT1G60360.11.9e-1046.00RING/U-box superfamily protein [more]
AT3G19950.13.2e-1046.00RING/U-box superfamily protein [more]
AT2G40830.27.2e-1038.89RING-H2 finger C1A [more]
AT2G40830.17.2e-1038.89RING-H2 finger C1A [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 184..225
e-value: 6.4E-8
score: 42.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 183..225
e-value: 2.8E-12
score: 46.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 184..226
score: 12.725326
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 140..230
e-value: 2.1E-17
score: 64.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..151
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 73..230
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 73..230
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 183..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g07750.1Cp4.1LG08g07750.1mRNA