Cp4.1LG08g07750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTAGCAGATTCGGGCACATTCCGCTGCAATCTCCACCGCTACGACGGTCTCGATCAGCTTCTCCAAATTCGAATAGGTCATTCAAGCCGTCTGCTCACCGAATCGCCGTTCTCCGGATATGCTTTCAATATCGTCCATGGAACTCTCCCTACTACAATGGCAGATGCTCAATTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTATTTTGCCGAGCTTACATCGAGGAATTTCTAAGTTCTTACAACCTTGGCGCCACAATAAAAAACGCCATTGCTCGGAGTATTGCCTCGTTCGTCGTTCAAATGGCGTGCGAAAACTACGAGATGAAGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGATGGACGACAGTGCGACTGCGGCGGAGGAGGAGGATGAGGATGAGGAGGAAGAGGAGGAGGAGACGGAGATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGCTGAAGGAGAAATTCGATGAATTTGGGGGAGAAGATTTGAGGAATTGTAGTGTGTGTTATGATGAGATGAAGGATGGCGGGGAAGAAGTGAGCAGAATCCCCTGCGGACATGTGTATCATAAATATTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTCTGTGCACAAAGAAACTAGAAGTTTAA ATGTCTTTAGCAGATTCGGGCACATTCCGCTGCAATCTCCACCGCTACGACGGTCTCGATCAGCTTCTCCAAATTCGAATAGGTCATTCAAGCCGTCTGCTCACCGAATCGCCGTTCTCCGGATATGCTTTCAATATCGTCCATGGAACTCTCCCTACTACAATGGCAGATGCTCAATTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTATTTTGCCGAGCTTACATCGAGGAATTTCTAAGTTCTTACAACCTTGGCGCCACAATAAAAAACGCCATTGCTCGGAGTATTGCCTCGTTCGTCGTTCAAATGGCGTGCGAAAACTACGAGATGAAGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGATGGACGACAGTGCGACTGCGGCGGAGGAGGAGGATGAGGATGAGGAGGAAGAGGAGGAGGAGACGGAGATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGCTGAAGGAGAAATTCGATGAATTTGGGGGAGAAGATTTGAGGAATTGTAGTGTGTGTTATGATGAGATGAAGGATGGCGGGGAAGAAGTGAGCAGAATCCCCTGCGGACATGTGTATCATAAATATTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTCTGTGCACAAAGAAACTAGAAGTTTAA ATGTCTTTAGCAGATTCGGGCACATTCCGCTGCAATCTCCACCGCTACGACGGTCTCGATCAGCTTCTCCAAATTCGAATAGGTCATTCAAGCCGTCTGCTCACCGAATCGCCGTTCTCCGGATATGCTTTCAATATCGTCCATGGAACTCTCCCTACTACAATGGCAGATGCTCAATTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTATTTTGCCGAGCTTACATCGAGGAATTTCTAAGTTCTTACAACCTTGGCGCCACAATAAAAAACGCCATTGCTCGGAGTATTGCCTCGTTCGTCGTTCAAATGGCGTGCGAAAACTACGAGATGAAGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGATGGACGACAGTGCGACTGCGGCGGAGGAGGAGGATGAGGATGAGGAGGAAGAGGAGGAGGAGACGGAGATTTTTGACGACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGCTGAAGGAGAAATTCGATGAATTTGGGGGAGAAGATTTGAGGAATTGTAGTGTGTGTTATGATGAGATGAAGGATGGCGGGGAAGAAGTGAGCAGAATCCCCTGCGGACATGTGTATCATAAATATTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTCTGTGCACAAAGAAACTAGAAGTTTAA MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQFPLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEIDYIQMFWMDDSATAAEEEDEDEEEEEEETEIFDDFSGRRGAPETAIERLKEKFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLEV Homology
BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.4e-10 Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09 Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08 Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08 Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy Swiss-Prot
Match: Q07G42 (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08 Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539483.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 469 bits (1207), Expect = 7.11e-167 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 412 bits (1060), Expect = 1.64e-144 Identity = 209/231 (90.48%), Postives = 212/231 (91.77%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 401 bits (1030), Expect = 9.41e-140 Identity = 205/239 (85.77%), Postives = 213/239 (89.12%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: XP_023539485.1 (RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 372 bits (955), Expect = 1.89e-128 Identity = 192/231 (83.12%), Postives = 200/231 (86.58%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. NCBI nr
Match: KAG6596836.1 (hypothetical protein SDJN03_10016, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 366 bits (940), Expect = 4.66e-126 Identity = 189/238 (79.41%), Postives = 199/238 (83.61%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1) HSP 1 Score: 201 bits (512), Expect = 1.13e-61 Identity = 108/238 (45.38%), Postives = 140/238 (58.82%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 201 bits (511), Expect = 1.46e-61 Identity = 111/240 (46.25%), Postives = 146/240 (60.83%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1) HSP 1 Score: 197 bits (500), Expect = 8.13e-60 Identity = 107/235 (45.53%), Postives = 141/235 (60.00%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1) HSP 1 Score: 189 bits (481), Expect = 5.03e-57 Identity = 110/238 (46.22%), Postives = 142/238 (59.66%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1) HSP 1 Score: 153 bits (386), Expect = 1.38e-42 Identity = 91/242 (37.60%), Postives = 138/242 (57.02%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 ) HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11 Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 1.9e-10 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.2 bits (152), Expect = 3.2e-10 Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A ) HSP 1 Score: 62.0 bits (149), Expect = 7.2e-10 Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0
BLAST of Cp4.1LG08g07750 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A ) HSP 1 Score: 62.0 bits (149), Expect = 7.2e-10 Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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