Cp4.1LG08g07720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g07720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionE3 ubiquitin-protein ligase MBR2-like
LocationCp4.1LG08: 6113357 .. 6114079 (-)
RNA-Seq ExpressionCp4.1LG08g07720
SyntenyCp4.1LG08g07720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAGCAGATTCGGCCACATTCCGCTGCAATCTCCACCGCTACGACGATCCCGATCAGCTTCTCCAAATTCGAATACGTCATTCAACACGTCTTCTCACCGGATCGCCATTCTCCGGATATCCTTTCAATATCGTCCATGAAACTCTCCCTACTACAATGGCGGATGCTCAGTTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTGTTCTGCCAAGCTTACATCGAGGAATTTCTGAGTTCTTACAACCTTGGTGCCACAATAAAAAACGCCATTGCTCGGAGGATTGCCTCGTTCGTCGTTCAAATGGCGTGCGGAAACTACGAGATGACGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGTTGGATCAGAGTGCGATTGCAGCAGAGGAGGAGGAGGAGGAGGAAGAAGATGAGGAGGAGGAAGAAGATGAGGAGGAGGAGGAGGAGGAGGTGATTTTTGACAACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGTTGAAGAAGGAGAAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTGCAGTGTGTGTTATGATGAGATGAAGGACGGTGGGGAAGAAGTGAGCAGAATCCCCTGCGGACACGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTTTGTGCAGAAAGAAACTAGAAGCTTAA

mRNA sequence

ATGTCTTTAGCAGATTCGGCCACATTCCGCTGCAATCTCCACCGCTACGACGATCCCGATCAGCTTCTCCAAATTCGAATACGTCATTCAACACGTCTTCTCACCGGATCGCCATTCTCCGGATATCCTTTCAATATCGTCCATGAAACTCTCCCTACTACAATGGCGGATGCTCAGTTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTGTTCTGCCAAGCTTACATCGAGGAATTTCTGAGTTCTTACAACCTTGGTGCCACAATAAAAAACGCCATTGCTCGGAGGATTGCCTCGTTCGTCGTTCAAATGGCGTGCGGAAACTACGAGATGACGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGTTGGATCAGAGTGCGATTGCAGCAGAGGAGGAGGAGGAGGAGGAAGAAGATGAGGAGGAGGAAGAAGATGAGGAGGAGGAGGAGGAGGAGGTGATTTTTGACAACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGTTGAAGAAGGAGAAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTGCAGTGTGTGTTATGATGAGATGAAGGACGGTGGGGAAGAAGTGAGCAGAATCCCCTGCGGACACGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTTTGTGCAGAAAGAAACTAGAAGCTTAA

Coding sequence (CDS)

ATGTCTTTAGCAGATTCGGCCACATTCCGCTGCAATCTCCACCGCTACGACGATCCCGATCAGCTTCTCCAAATTCGAATACGTCATTCAACACGTCTTCTCACCGGATCGCCATTCTCCGGATATCCTTTCAATATCGTCCATGAAACTCTCCCTACTACAATGGCGGATGCTCAGTTCCCCCTTCCTCTGCGAGAGCTCGAAGATCCGTTGTTCTGCCAAGCTTACATCGAGGAATTTCTGAGTTCTTACAACCTTGGTGCCACAATAAAAAACGCCATTGCTCGGAGGATTGCCTCGTTCGTCGTTCAAATGGCGTGCGGAAACTACGAGATGACGTTCTACATCGTTGCGGAAATCGATTACATCCAGATGTTTTGGTTGGATCAGAGTGCGATTGCAGCAGAGGAGGAGGAGGAGGAGGAAGAAGATGAGGAGGAGGAAGAAGATGAGGAGGAGGAGGAGGAGGAGGTGATTTTTGACAACTTTTCGGGGAGGAGAGGGGCGCCGGAGACGGCGATAGAGAGGTTGAAGAAGGAGAAATTCGATGGGTTTGGGGGAGAAGATTTGGGGAATTGCAGTGTGTGTTATGATGAGATGAAGGACGGTGGGGAAGAAGTGAGCAGAATCCCCTGCGGACACGTGTATCATAAATCTTGTGTTCTCACTTGGCTTCAAAGGAACAACTCATGTCCTTTGTGCAGAAAGAAACTAGAAGCTTAA

Protein sequence

MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQFPLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEIDYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA
Homology
BLAST of Cp4.1LG08g07720 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 165 GRRGAP---ETAIERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCV 224
           GRRGAP   ++AIE L+  +     GE +  C+VC D M   GE   ++PCGH YH  C+
Sbjct: 226 GRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMV-MGETGKKLPCGHCYHGDCI 285

Query: 225 LTWLQRNNSCPLCRKKLE 240
           + WL   NSCP+CR +LE
Sbjct: 286 VPWLGTRNSCPVCRFQLE 302

BLAST of Cp4.1LG08g07720 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 32/90 (35.56%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 162 NFSGRRGAP-----ETAIERLKKEKFDGFGGEDLGN-------CSVCYDEMKDGGE-EVS 221
           NF G    P     +  ++R  KE +D F  E L N       C +CYD+M +  E + +
Sbjct: 66  NFEGGENDPFANPFQPPVKRAVKEAWDSF--EPLSNDQLMDLTCPICYDDMNENDEKQAT 125

Query: 222 RIPCGHVYHKSCVLTWLQRNNSCPLCRKKL 239
           ++PCGH++ K+C+  WL+ + +CPLCRK++
Sbjct: 126 KMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153

BLAST of Cp4.1LG08g07720 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 157 EVIFDNFSG---RRG---APETAIERLKKEKF-DGFGGEDLGNCSVCYDEMKDGGEEVSR 216
           E +F+  S    RRG   AP +AI+ L   K           NC VC DE  + G E  +
Sbjct: 147 EELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEF-ELGSEAKQ 206

Query: 217 IPCGHVYHKSCVLTWLQRNNSCPLCRKKL 239
           +PC H+YH  C++ WL ++NSCP+CR++L
Sbjct: 207 MPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

BLAST of Cp4.1LG08g07720 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-09
Identity = 25/74 (33.78%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 168 GAPETAIERLKKEKFDGFGGEDLG---NCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTW 227
           G P  + +R+ +        E++     CS+C+D+ K   E V ++PC H+YH++C++ W
Sbjct: 225 GPPPLSAQRINEIPNVQINAEEVNRKIQCSICWDDFKI-DETVRKLPCSHLYHENCIVPW 284

Query: 228 LQRNNSCPLCRKKL 239
           L  +++CP+CRK L
Sbjct: 285 LNLHSTCPICRKSL 297

BLAST of Cp4.1LG08g07720 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-09
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 153 EEEEEVIFDNFSGRRGAP---ETAIERLKKEKF-DGFGGEDLGNCSVCYDEMKDGGEEVS 212
           E+  + + +N   R G P   ++AI+ L   K        ++  C+VC DE +D G +V 
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFED-GSDVK 231

Query: 213 RIPCGHVYHKSCVLTWLQRNNSCPLCRKKL 239
           ++PC HV+H+ C+L WL+ +NSCP+CR +L
Sbjct: 232 QMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260

BLAST of Cp4.1LG08g07720 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473 bits (1216), Expect = 6.04e-168
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF
Sbjct: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI
Sbjct: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180
           DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE
Sbjct: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180

Query: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA 240
           KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA
Sbjct: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA 240

BLAST of Cp4.1LG08g07720 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428 bits (1101), Expect = 1.33e-150
Identity = 215/240 (89.58%), Postives = 221/240 (92.08%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           MSLAD ATFRCNLHRYD PDQLLQIRI HS+RLLTGSPFSGYPFNIVHETLPTTMADAQF
Sbjct: 1   MSLADLATFRCNLHRYDGPDQLLQIRIGHSSRLLTGSPFSGYPFNIVHETLPTTMADAQF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFCQAYI+EFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI
Sbjct: 61  PLPLRELEDPLFCQAYIKEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180
           DYIQMFW+D SA AAEEEE+EEE+ E            IFD+FSGRRGAPETAIERLKKE
Sbjct: 121 DYIQMFWMDDSATAAEEEEDEEEETE------------IFDDFSGRRGAPETAIERLKKE 180

Query: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA 240
           KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCR KLEA
Sbjct: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRNKLEA 228

BLAST of Cp4.1LG08g07720 vs. NCBI nr
Match: KAG6596836.1 (hypothetical protein SDJN03_10016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411 bits (1057), Expect = 1.00e-143
Identity = 212/240 (88.33%), Postives = 220/240 (91.67%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           MS ADS TF CNLHRYD PDQLLQIRI HS RL  GSP  GYPFNIV+ETL T   DAQF
Sbjct: 1   MSFADSVTFTCNLHRYDGPDQLLQIRIGHSRRLFIGSPLPGYPFNIVYETLTTITVDAQF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
            LPLRELEDPLFC+AYIEEFLSSYNL ATI NAIA+RIASFVVQMACGNYEMTFYIVAEI
Sbjct: 61  SLPLRELEDPLFCRAYIEEFLSSYNLDATINNAIAQRIASFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180
           DYIQMFWLDQSAIAAEEEEEEEE+E+EEE EEEEEEEVIFDNFS RRGAPETAIERLKKE
Sbjct: 121 DYIQMFWLDQSAIAAEEEEEEEEEEDEEE-EEEEEEEVIFDNFSERRGAPETAIERLKKE 180

Query: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA 240
           KFDGFGGEDLGNCSVCYDEMK+GGEE+ RIPCGHVYHKSCVLTWLQRNNSCPLCRKK+EA
Sbjct: 181 KFDGFGGEDLGNCSVCYDEMKEGGEELIRIPCGHVYHKSCVLTWLQRNNSCPLCRKKIEA 239

BLAST of Cp4.1LG08g07720 vs. NCBI nr
Match: XP_023539485.1 (RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400 bits (1029), Expect = 1.44e-139
Identity = 209/240 (87.08%), Postives = 213/240 (88.75%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           MS ADS TFRCNLHRYD   QLLQIRI HSTRLL GS F GYPFNIV+ETL T MADAQF
Sbjct: 1   MSFADSITFRCNLHRYDGLYQLLQIRIGHSTRLLIGSSFPGYPFNIVYETLTTRMADAQF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFC+AYIEEFLSSYNL ATI NAIA+RI SFVVQMACGNYEMTFYIVAEI
Sbjct: 61  PLPLRELEDPLFCRAYIEEFLSSYNLDATINNAIAQRITSFVVQMACGNYEMTFYIVAEI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180
           DYIQMFWLDQSAIA EEEEEEE+        EEEE EVIFDNFS RRGAPETAIERLKKE
Sbjct: 121 DYIQMFWLDQSAIATEEEEEEED--------EEEEVEVIFDNFSERRGAPETAIERLKKE 180

Query: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLEA 240
           KFDGFGGEDLGNCSVCYDEMKDGGEEVSRI CGHVYHKSCVLTWLQRNNSCPL RKKLEA
Sbjct: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRILCGHVYHKSCVLTWLQRNNSCPLWRKKLEA 232

BLAST of Cp4.1LG08g07720 vs. NCBI nr
Match: XP_023539483.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1014), Expect = 2.68e-137
Identity = 206/239 (86.19%), Postives = 212/239 (88.70%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           MSLADS TFRCNLHRYD  DQLLQIRI HS+RLLT SPFSGY FNIVH TLPTTMADAQF
Sbjct: 1   MSLADSGTFRCNLHRYDGLDQLLQIRIGHSSRLLTESPFSGYAFNIVHGTLPTTMADAQF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFC+AYIEEFLSSYNLGATIKNAIAR IASFVVQMAC NYEM FYIVAEI
Sbjct: 61  PLPLRELEDPLFCRAYIEEFLSSYNLGATIKNAIARSIASFVVQMACENYEMKFYIVAEI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180
           DYIQMFW+D SA AAEEE+E+EE        EEEEE  IFD+FSGRRGAPETAIERLK E
Sbjct: 121 DYIQMFWMDDSATAAEEEDEDEE--------EEEEETEIFDDFSGRRGAPETAIERLK-E 180

Query: 181 KFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLE 239
           KFD FGGEDL NCSVCYDEMKDGGEEVSRIPCGHVYHK CVLTWLQRNNSCPLC KKLE
Sbjct: 181 KFDEFGGEDLRNCSVCYDEMKDGGEEVSRIPCGHVYHKYCVLTWLQRNNSCPLCTKKLE 230

BLAST of Cp4.1LG08g07720 vs. ExPASy TrEMBL
Match: A0A6J1G7R8 (E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451612 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 3.86e-62
Identity = 108/246 (43.90%), Postives = 143/246 (58.13%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           M  A+S+T R +L R D  DQLLQ+R+ +S+RL++ SP+SG P++I+ ET  T +AD  F
Sbjct: 1   MLFANSSTLRYSLRRKDGTDQLLQVRLGYSSRLISRSPYSGLPYDILEETPSTLIADTLF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS NL +   N IA++I S V Q A  +Y++ F +VA+I
Sbjct: 61  PLPLRELEDPLFCHAYLVELVSSLNLDSISCNPIAQKITSLVTQWAAVDYDLKFQLVADI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGA--------PET 180
           DYIQMFW ++S                                  RRG          E 
Sbjct: 121 DYIQMFWREESRGPV------------------------------RRGVMVEEKVVLEEA 180

Query: 181 AIERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCP 238
            +         G GGE+   C  CYDE K G +EV++IPCGH++HKSC+LTW   +NSCP
Sbjct: 181 GVAATSAAGKQGMGGEECSVCYECYDEEKGGDKEVAKIPCGHMFHKSCILTWFLCSNSCP 216

BLAST of Cp4.1LG08g07720 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 7.04e-62
Identity = 113/247 (45.75%), Postives = 154/247 (62.35%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           M  A+++T R +L R    DQLLQ+R+ +S+RL++ SP +G P++I+ ET  T MADA F
Sbjct: 1   MPFANASTLRYSLRRNHGADQLLQLRLGYSSRLISRSPSAGLPYDILEETPSTPMADALF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS+NLG+   N I ++I SFV Q A  +Y+  F +VA+I
Sbjct: 61  PLPLRELEDPLFCHAYLVELVSSFNLGSVTWNPIVQKITSFVTQWAAVDYDAKFQLVADI 120

Query: 121 DYIQMFWLDQS------AIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAI 180
           DYIQMFW+++        +  EE                    V+ +         ET +
Sbjct: 121 DYIQMFWMEKHRGSVGRGVMVEER-------------------VVLE---------ETGV 180

Query: 181 ERLKKEKFDGFGGEDLGNCSVCYD--EMKDGGE-EVSRIPCGHVYHKSCVLTWLQRNNSC 238
              +K+   G GGE+   CSVCY+  E + GGE EV++IPCGH +HKSC+LTW QR+NSC
Sbjct: 181 AAAEKQ---GIGGEE---CSVCYESYEAEKGGEKEVAKIPCGHAFHKSCILTWFQRSNSC 213

BLAST of Cp4.1LG08g07720 vs. ExPASy TrEMBL
Match: A0A6J1L191 (E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111499501 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 5.56e-60
Identity = 107/244 (43.85%), Postives = 147/244 (60.25%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           M  A+S+T R +L R+   DQLLQ+R+ +S+RL++ SP +G P++I+ ET  T +ADA F
Sbjct: 1   MLFANSSTLRYSLRRHHGTDQLLQVRLGYSSRLISQSPSAGLPYDILEETPLTPIADALF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS NL +   N I ++I S V Q A  +Y+  F +V +I
Sbjct: 61  PLPLRELEDPLFCHAYLVELVSSLNLDSMSCNPIIQKITSLVTQWAAVDYDAKFQLVVDI 120

Query: 121 DYIQMFWLDQS------AIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAI 180
           DYIQMFW ++S       +  EE                    ++ D    + G   T  
Sbjct: 121 DYIQMFWREESRGPVRRGVMVEER-------------------IVLD----KAGVAATVA 180

Query: 181 ERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLC 238
                ++  G GGE+   C  CYDE K G +EV++IPCGH++HKSC+LTW Q +NSCPLC
Sbjct: 181 AAAAGKQ--GMGGEECSVCYECYDEEKGGDKEVAKIPCGHMFHKSCILTWFQCSNSCPLC 219

BLAST of Cp4.1LG08g07720 vs. ExPASy TrEMBL
Match: A0A6J1L186 (NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4 SV=1)

HSP 1 Score: 192 bits (487), Expect = 8.53e-58
Identity = 109/245 (44.49%), Postives = 147/245 (60.00%), Query Frame = 0

Query: 1   MSLADSATFRCNLHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQF 60
           M LA+++T R +L R    DQ L+ R+ +S+RL++ SP +G P++I+ ET  T MADA F
Sbjct: 1   MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALF 60

Query: 61  PLPLRELEDPLFCQAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYEMTFYIVAEI 120
           PLPLRELEDPLFC AY+ E +SS NL +   N I ++I S V Q A  +Y+  F +VA+I
Sbjct: 61  PLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADI 120

Query: 121 DYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKE 180
           DYIQMFW+++   +                              GR    E  +   + E
Sbjct: 121 DYIQMFWMEKRPGSV-----------------------------GRGVMVEEKVVLKEAE 180

Query: 181 ----KFDGFGGEDLGNCSVCYD--EMKDGGE-EVSRIPCGHVYHKSCVLTWLQRNNSCPL 238
               +  G GGE+   CSVCY+  E + GGE EV++IPCGHV+HKSC+LTW QR+NSCPL
Sbjct: 181 VAAAEKQGIGGEE---CSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPL 213

BLAST of Cp4.1LG08g07720 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 3.59e-48
Identity = 94/250 (37.60%), Postives = 142/250 (56.80%), Query Frame = 0

Query: 1   MSLADSATFRCN--------LHRYDDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLP 60
           ++  DS +F+C+        L  ++ P Q +++R+ HS+ L++ S        I+ +T  
Sbjct: 3   LTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQ-----ILQQTPS 62

Query: 61  TTMADAQFPLPLRELEDPLFC-QAYIEEFLSSYNLGATIKNAIARRIASFVVQMACGNYE 120
           T M DA FP  LR+L  P F  ++++  FLSS+++   + N I   I+SF + +A GN +
Sbjct: 63  TPMGDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVD 122

Query: 121 MTFYIVAEIDYIQMFWLDQSAIAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFS--GRRGA 180
           + F+IV ++D I+M W+D                             + + +S     GA
Sbjct: 123 LNFHIVVDVDAIEMIWVDLDPF-------------------------LIEEYSPPAMNGA 182

Query: 181 PETAIERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNN 239
           P +AIERL++++FDG   E+ G CSVC + +K G EEVSRIPCGHVYHK C+L WLQ +N
Sbjct: 183 PASAIERLQRQEFDGLREEEEGECSVCCEALK-GEEEVSRIPCGHVYHKCCILRWLQMSN 221

BLAST of Cp4.1LG08g07720 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-13
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 165 GRRGAP---ETAIERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCV 224
           GRRGAP   ++AIE L+  +     GE +  C+VC D M   GE   ++PCGH YH  C+
Sbjct: 226 GRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMV-MGETGKKLPCGHCYHGDCI 285

Query: 225 LTWLQRNNSCPLCRKKLE 240
           + WL   NSCP+CR +LE
Sbjct: 286 VPWLGTRNSCPVCRFQLE 302

BLAST of Cp4.1LG08g07720 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 157 EVIFDNFSG---RRG---APETAIERLKKEKF-DGFGGEDLGNCSVCYDEMKDGGEEVSR 216
           E +F+  S    RRG   AP +AI+ L   K           NC VC DE  + G E  +
Sbjct: 147 EELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEF-ELGSEAKQ 206

Query: 217 IPCGHVYHKSCVLTWLQRNNSCPLCRKKL 239
           +PC H+YH  C++ WL ++NSCP+CR++L
Sbjct: 207 MPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

BLAST of Cp4.1LG08g07720 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 157 EVIFDNFSG---RRG---APETAIERLKKEKF-DGFGGEDLGNCSVCYDEMKDGGEEVSR 216
           E +F+  S    RRG   AP +AI+ L   K           NC VC DE  + G E  +
Sbjct: 147 EELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEF-ELGSEAKQ 206

Query: 217 IPCGHVYHKSCVLTWLQRNNSCPLCRKKL 239
           +PC H+YH  C++ WL ++NSCP+CR++L
Sbjct: 207 MPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

BLAST of Cp4.1LG08g07720 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 157 EVIFDNFSG---RRG---APETAIERLKKEKF-DGFGGEDLGNCSVCYDEMKDGGEEVSR 216
           E +F+  S    RRG   AP +AI+ L   K           NC VC DE  + G E  +
Sbjct: 147 EELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEF-ELGSEAKQ 206

Query: 217 IPCGHVYHKSCVLTWLQRNNSCPLCRKKL 239
           +PC H+YH  C++ WL ++NSCP+CR++L
Sbjct: 207 MPCNHIYHSDCIVPWLVQHNSCPVCRQEL 234

BLAST of Cp4.1LG08g07720 vs. TAIR 10
Match: AT5G41430.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 166 RRGAPETAIERLKKEKFDGFGGEDLGNCSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWL 225
           R    E   + ++KE FD  G      CS+C +E++DG E +    C HV+H+SC+ +WL
Sbjct: 96  RASIEEMEFKDIEKEGFDEIG------CSICLEELEDGHEIIRIKKCRHVFHRSCIDSWL 155

Query: 226 QRNNSCPLCR 236
           ++N SCP CR
Sbjct: 156 KQNRSCPNCR 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SPL21.0e-1146.15E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV... [more]
Q9Y7K61.9e-1035.56Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai... [more]
O221979.6e-1039.33Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
Q9VHI74.8e-0933.78E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1... [more]
Q8LPN78.1e-0936.67E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
Match NameE-valueIdentityDescription
XP_023539471.16.04e-168100.00uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo][more]
XP_023539480.11.33e-15089.58E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
KAG6596836.11.00e-14388.33hypothetical protein SDJN03_10016, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023539485.11.44e-13987.08RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo][more]
XP_023539483.12.68e-13786.19E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1G7R83.86e-6243.90E3 ubiquitin-protein ligase MBR2-like OS=Cucurbita moschata OX=3662 GN=LOC111451... [more]
A0A6J1G7L17.04e-6245.75NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE... [more]
A0A6J1L1915.56e-6043.85E3 ubiquitin-protein ligase At1g63170-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1L1868.53e-5844.49NEP1-interacting protein-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111499495 PE=4... [more]
A0A6J1G8093.59e-4837.60probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
Match NameE-valueIdentityDescription
AT5G64920.17.3e-1346.15COP1-interacting protein 8 [more]
AT2G40830.26.8e-1139.33RING-H2 finger C1A [more]
AT2G40830.16.8e-1139.33RING-H2 finger C1A [more]
AT2G40830.36.8e-1139.33RING-H2 finger C1A [more]
AT5G41430.16.8e-1140.00RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 128..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..159
NoneNo IPR availablePANTHERPTHR45931:SF9E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKEcoord: 73..239
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 73..239
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 192..238
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 193..234
e-value: 4.6E-8
score: 42.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 192..235
e-value: 7.8E-14
score: 51.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 193..235
score: 13.581
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 169..240
e-value: 5.9E-19
score: 69.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g07720.1Cp4.1LG08g07720.1mRNA