Cp4.1LG08g07650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g07650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ycf49-like protein
Location	Cp4.1LG08: 6190537 .. 6195254 (-)
RNA-Seq Expression	Cp4.1LG08g07650
Synteny	Cp4.1LG08g07650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTGATCAATTTGTTGAAGCAAACATTCTGGGAACATGAAAAGAGATTGGACCCAAATTTGGTCCACAAATTCGATTGTTATCGCCATTTACCTTCTTCCCGAATCTTCACCTTCTCCACTGAAAGCAAACCAGAAGCGACTGTGAATTAGGGGAATCGCTGAATCGAAGAGATGATTCGCTGTTTTCAGACCAATTCTTCCATTGATTACTGAATCTATCAGTTTCCTCTGCTTTCTTTTAGCATTTGGGAACTCAATTTTCGTTTTCTACAAAGAAAAAAAACCCCAAATCATGTCACTCACTTCCACCTTGTTCCATTCCTTTTCAAATCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCGTTGCCGAGGTCGGCGACGGATTTCGCCGCTTCTTCTCAAGCTCTGACTGGAATTCGATTTCCGAGGACTATCGGCGCCGGTCTGGCTTTGGACTCGAAAACTATGGTGGTTTTGATCGGCACGGGCTTGACTCTTGCTCTTCTGGGACCTGAATCGGCTGCTGCTACTGCTGCTGCAACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAACCCCAAAATGCTCTGTCCTTGCCCACCTGGGCTATACATGTTTCCAGTGTTGTTGAATGGTGAGGATTTATGATTCTTGTTCTTGTTTGTAATGATTTCATGAACATCCTTTGATGCTTTTAGAAGTTTGAATACAAGATATTATGAACAAGTCAGTATTACTTGAAAAGAAAATGAGCTTATAGAAGTTTTAGAAGTTTGAATTCAAGATATTATGAACTCGTGATTATAATGATAGGTTGGAGATATGAGCTTTATGATCATTTTCAAACTGAAACTAGCTCTGGATTTTAGCTACCCATTTGATGAATAAACCAAACAGTTCATATCCTGCTTGTGGCTAGCTTGGCGTATACTTTGTTGATCTCAAGTCTTGTGTTGTTTGTAAGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAGGGACTTTCTTGGGGAATGGTATGTTCTTTTTCTCTGTTTATAATTACTTTCTCATCTATCTTATAGCCAGGAGTTTCTCTTTCTTTGTTTTTGAATGAATCCCATGCACTTATTTATATTGTAATTCAGAAAATTGAATGCTTTTGCAACGGCCCAAGCACACCACTACCAAATATTGTCTTCTTTGGGCTTTTCCGTTTGGACTTCCCCTCAATGTTTTTAGAACCTTCTAGGGAGAGGTTTCCATACCCTTATAAAGAATGTTTCGTTCTCATCTCCAACCAATGTGGGATCTCACTATCCGCCCCCCTCAAGGCCCAGCATTCTCGCTGACACTCGTTCCCCTCTCCAATCGATGTGGGACCCCCCCCCCCAATCCACTCCCTTTGAGGCCATGTGTCCTTGTTGACACACCGCCTCGTGTCCACTCCCCTTTGGGGCTTAGCCTCCTCGCTGGTGCTTGGCTCCCCCCCAATCCACTCCCTTTGAGGCCATGTGTCCTTGTTGACACACCGCCTCGTGTCCACTCCCCTTTGGGGCTTAGCCTCCTCGCTGGTGCTTGGCTCCCCCCCAATCCACTCCCTTTGAGGCCATGTGTCCTTGTTGACACACCGCCTCGTGTCCACTCCCCTTTGGGGCTTAGCCTCCTCGCTGGTGCTTGGCTCCCCCCCAATCCACTCCCTTTGAGGCCATGTGTCCTTGTTGACACACCGCCTCGTGTCCACTCCCCTTTGGGGCTTAGCCTCCTCGCTGGTGCTTGGCTCCCCCCCCATCCACTCCCTTTGAGGCCATGCGTCCTTGTTGACACACCGCCTCGTGTCCACTCCCCTCACTCGCCTGGTGCCGGGCTCTGATACCATTTGTAGCAACCCAAACCCATCTCTAGCAAATATTATCCTCTTTGGGTTTTCCCTTTCAGGCTTCCTCTCAAGGTTGTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTATCCTTCTCAACCGATGTAGGATCTCACAGCTTTAGAGGGAGAAGAGAGAGCGAAGATAAGTGACTAAATAAATTATTATTTCTTTAGTCACTCTCAGTTCATTGTATTTCTTTGAAAAGAGACAGAGAAGAATAAGAAGAAATAATGCTTAAGCAATCCTGAACTGATATTTCATAACATATTAAAGTAAACCATCACAACCAAACAGAGAATAAATGTAAAATTGGATTCTGTTTATCCTCATTGTCTTGGAATGATTCAATTAGAGAAGTATTAACTTATGTTTGTGGGCTGTTTCCTACAAAGTCATAATTTGGCTGCGTAGAGCTTCAAAGTTCTTCAAAGCTTTTAGATTTCGTTTGAATGGTTCAACTGCATCACTGTTTTCTTTCTTAACTTGAGCAGGTACCATTGCTTGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAATTCTGAGTCTCTCGAGGTACACAAAGTTTCAGTTTTGGCAAGATTTTGCTGGACATAATGAAAGAACTAATAGTGTTAACCGCCCAAGTCCACCGCGAGTAAATTTTTGTCTTTTTTGGGCCTCTCCTTCCGGGCTTCCCTACAAGGATTTTGAAACTTGTCTATTAGGGAGAGGTTTCCACACCCTTATAAAGAATACTCTGTTCCCCGTTTCAACCGATATAGGATCTCACAATCCACCCCCTTTGGGGCCCAACGTCCTCGCGGACACTCATTCCCCTCTCCAATCGATGTGGGACCCCCCAATACACCACCCTTCAGGGCCAGCGTTCTTGCTAGCACACCGTCTGGTGTCCACCCCCCTTCAGGGTTCAGCCTCCTCGCTGGCATATTGACCGATGTCCGACTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTATCAAATATTGTTCTCTTTGGGCTTTCTCGTTCAGACTTTCCCTCAAGGTTTTTAAAACGTGCCTGCTAGGGAGAGATCTCCACACCCTTATAAAGAATGTTTTGTTCCCCCTCCAACCGATGTGAGATAATGCATACAAAGTTTTATTCTAGTTCTTTATGATAGTGATTTGTCAAAGTTCTGAAACTACTAAAAGATCCACCTAGCCGAAATAGTTTTCTGTCATTACTATATTAGCCTCTTTCAATTATTCTCATTATGGATAATTCAGACCATCACTTTTTAGCTGATTAATCTTTTCAAATGTAGTCCTAAAACAAACCATCGATTAGGAAACTCTGCAGATTGCCCAATTTAGTCCAACTGAATCATATGAACACTGCTCTGGTACTGATATTTAGAGGGGTAATACAATGGTCCAAGTGAGAGTTCAAGAGCTCCCGAATCTCTCTCAAAACCAGACCGTAGCAAAATAGCTGAAGGATGCCTCCCTTCCTACATGTATATCTGTACTGTTCTTAATTGGGGGCCTATCATTCAAGTCCATCACCATTTTAGGTTTTTAATTCTAACTTTGAACTCTGAGATCATAAGAGAATCAACTCCTTAATGCTTGTTCTGTTATCAGTCAGGACTCTGAGATCCCATTTATATCTTGAAAATTTGTTAACTGATCATTTTCTTTTGGTTTACTACAATACTTCGGTTCCCTCGTTCCCTTTCACTTTCAATCAAGTATTGAAGCTGGCATGGATGTCCCTTTCATATTATGTTCAATGATAGTGAGAATAGTGCTAAGAATTGGGAATGTTTGATTTCTATTCCACCAACAGAGAGTTTGGTGAATTGGATTTCTTGTTTTTGGTTTTGGTTCATAGGATTCAGATTCTATTGGTGTACCCCGAGGAATCCTGGATCTTTCATTATCGTGAATAACTGATTTTTCTCAATCTTTTCAACAAGCTTCAAACGAAAAAGGCAGCTTCTGTAACCGTCTAAGCCCACCGCTAGCAAATATTGTCTTTTTTGGGCTTCCTCTCAATGTTTTTAAAACGTGTCTGTTAGGGAAAGGTTTTCACACCCTTATGAAAATGTTTCGTTCTCCTCTCCAACCAATATGGGATCTTACAATCCATCCTCTTTCAAGGTCCAACATCTTCGCTGGCATTCATTCCCTTCTCCCATCAATATGGGAACTCTCAATCCACCCCCTTTGTCGGGGCCAGCGTCCTTGCGTCACCACCTCATGTCCATCCCATTTGGGGCTCGGCTCACCTTGGAAAGGTTACGGAAAAACCAAACCCCCTCCCTCTCAAAGTTGATAAGGTTGGAGGGAAATTGACATTGGGTGGGGTTTGTTTGTTGAAAAGGAGCCAAAATGACATGGAAATGGTGTTTTGAGTGCAGGTTTTGGTGGCCCTTCAGGCAATACTGACGGCTGTAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATATACAAAGCATCACAAGAACGTTCAAGTAAGTTGTAAACAAACCATATAATATAACTCAACCTAGTAGGGATTTGATAGTGAACCCCAATGGTGAGGTTAGAAATGTGAAGGACAAACCAATGTTTGGTGATTGTTGTCAATGTCACAGCACATATTGGGTTGAAAAGTCAAATAATTTGGTTTCTATTTTCATTTACCCTTTTTGGTGAATGGTCAATTTTTATTCACATTTATACCCAACCACTTCCCTCCATCTCTTTTTTATTTCAATAAATTTCATTTAATATTTTTAAAAATATTTATG

mRNA sequence

TTATTGATCAATTTGTTGAAGCAAACATTCTGGGAACATGAAAAGAGATTGGACCCAAATTTGGTCCACAAATTCGATTGTTATCGCCATTTACCTTCTTCCCGAATCTTCACCTTCTCCACTGAAAGCAAACCAGAAGCGACTGTGAATTAGGGGAATCGCTGAATCGAAGAGATGATTCGCTGTTTTCAGACCAATTCTTCCATTGATTACTGAATCTATCAGTTTCCTCTGCTTTCTTTTAGCATTTGGGAACTCAATTTTCGTTTTCTACAAAGAAAAAAAACCCCAAATCATGTCACTCACTTCCACCTTGTTCCATTCCTTTTCAAATCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCGTTGCCGAGGTCGGCGACGGATTTCGCCGCTTCTTCTCAAGCTCTGACTGGAATTCGATTTCCGAGGACTATCGGCGCCGGTCTGGCTTTGGACTCGAAAACTATGGTGGTTTTGATCGGCACGGGCTTGACTCTTGCTCTTCTGGGACCTGAATCGGCTGCTGCTACTGCTGCTGCAACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAACCCCAAAATGCTCTGTCCTTGCCCACCTGGGCTATACATGTTTCCAGTGTTGTTGAATGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAGGGACTTTCTTGGGGAATGGTACCATTGCTTGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAATTCTGAGTCTCTCGAGGTTTTGGTGGCCCTTCAGGCAATACTGACGGCTGTAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATATACAAAGCATCACAAGAACGTTCAAGTAAGTTGTAAACAAACCATATAATATAACTCAACCTAGTAGGGATTTGATAGTGAACCCCAATGGTGAGGTTAGAAATGTGAAGGACAAACCAATGTTTGGTGATTGTTGTCAATGTCACAGCACATATTGGGTTGAAAAGTCAAATAATTTGGTTTCTATTTTCATTTACCCTTTTTGGTGAATGGTCAATTTTTATTCACATTTATACCCAACCACTTCCCTCCATCTCTTTTTTATTTCAATAAATTTCATTTAATATTTTTAAAAATATTTATG

Coding sequence (CDS)

ATGTCACTCACTTCCACCTTGTTCCATTCCTTTTCAAATCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCGTTGCCGAGGTCGGCGACGGATTTCGCCGCTTCTTCTCAAGCTCTGACTGGAATTCGATTTCCGAGGACTATCGGCGCCGGTCTGGCTTTGGACTCGAAAACTATGGTGGTTTTGATCGGCACGGGCTTGACTCTTGCTCTTCTGGGACCTGAATCGGCTGCTGCTACTGCTGCTGCAACGGAATTGCAGTCGTTGGGTGCTTCTTCGCTGCAGTTTAATGAACCCCAAAATGCTCTGTCCTTGCCCACCTGGGCTATACATGTTTCCAGTGTTGTTGAATGGATTACAGCAATGGCTTTGGTGTGGCAATATGGAGAGAAATCTGGCAATGAGTCTTGGAAGGGACTTTCTTGGGGAATGGTACCATTGCTTGGTGGAGCATTTTGTGCTTGCACATGGCATTTTTTCTACAATTCTGAGTCTCTCGAGGTTTTGGTGGCCCTTCAGGCAATACTGACGGCTGTAGGAAATGCCACAATGTGCATTGCTGCATTTCGCATATACAAAGCATCACAAGAACGTTCAAGTAAGTTGTAA

Protein sequence

MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAVGNATMCIAAFRIYKASQERSSKL

Homology

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy Swiss-Prot
Match: Q55720 (Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll0608 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-28
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 102 NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFF 161
           NALS+PTW +HVSSV+EWI A+ALV +Y  K+G   W+ L+WGMVP L  A CACTWHFF
Sbjct: 2   NALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHFF 61

Query: 162 YNSESLEVLVALQAILTAVGNATMCIAAFRIYKASQERSS 202
            N+  L+ LV LQA+ T +GN T+C+AA+ IY+ S + S+
Sbjct: 62  DNASQLDWLVTLQALTTVIGNITLCLAAWWIYRQSAQPSA 101

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy Swiss-Prot
Match: P15811 (Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-07
Identity = 34/93 (36.56%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 102 NALSLPTWAIHVSSVVEWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFF 161
           N LS  TW +H+SSV+EW+  +     Y +   N S K   +        A CACT HFF
Sbjct: 2   NVLSYFTWFVHLSSVLEWLNIIYFFLLYTKLKKNLSLKTFIFSFFISFCSALCACTLHFF 61

Query: 162 YNSESLEVLVALQAILTAVGNATMCIAAFRIYK 195
            N      L+ LQ+ LT   N T+  +   IYK
Sbjct: 62  NNQSFYYFLINLQSFLTLFANITLYFSIL-IYK 93

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy Swiss-Prot
Match: Q9TM18 (Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.3e-04
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 103 ALSLPTWAIHVSSVVEWITAMALVW---QYGEKSGNESWKGLSWGMVPLLGGAFCACTWH 162
           +LSLPTW IH+ ++VEW   + L++    + +   + ++  +   +   L G F AC WH
Sbjct: 3   SLSLPTWNIHIVTLVEWSIVIRLIYLFTYFYDIPRSFNFLIIILMIFFFLSGLF-ACCWH 62

Query: 163 FFYNSESLEVLVALQAILTAVGN 183
           FF N+  L  +   QA LTA  N
Sbjct: 63  FFNNNSILLWISVAQAALTAFSN 84

[Close]

BLAST of Cp4.1LG08g07650 vs. NCBI nr
Match: XP_023539827.1 (uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385 bits (990), Expect = 1.01e-134
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM
Sbjct: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYKASQERSSKL
Sbjct: 181 GNATMCIAAFRIYKASQERSSKL 203

[Close]

BLAST of Cp4.1LG08g07650 vs. NCBI nr
Match: XP_023005556.1 (uncharacterized protein LOC111498507 [Cucurbita maxima])

HSP 1 Score: 375 bits (963), Expect = 1.28e-130
Identity = 200/203 (98.52%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           MSLTSTL HSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPR IGAGLALDSKTM
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVLIGTGLTLALLGPESAAATAA TELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLIGTGLTLALLGPESAAATAA-TELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYKASQERSSKL
Sbjct: 181 GNATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of Cp4.1LG08g07650 vs. NCBI nr
Match: XP_022944188.1 (uncharacterized protein LOC111448709 [Cucurbita moschata])

HSP 1 Score: 370 bits (951), Expect = 9.25e-129
Identity = 199/204 (97.55%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSS-LPRSATDFAASSQALTGIRFPRTIGAGLALDSKT 60
           MSLTSTLF SFSNPKCPISSSSSSS LPRSATDFAASSQALT IRFPR IGAGLALDSKT
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKT 60

Query: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120
           MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW
Sbjct: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120

Query: 121 ITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180
           ITAMALVWQYGEKSG+ESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA
Sbjct: 121 ITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180

Query: 181 VGNATMCIAAFRIYKASQERSSKL 203
           VGNATMCIAAFRIYKASQERSSKL
Sbjct: 181 VGNATMCIAAFRIYKASQERSSKL 204

[Close]

BLAST of Cp4.1LG08g07650 vs. NCBI nr
Match: KAG6596827.1 (hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370 bits (950), Expect = 1.36e-128
Identity = 199/205 (97.07%), Postives = 200/205 (97.56%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSS--LPRSATDFAASSQALTGIRFPRTIGAGLALDSK 60
           MSLTSTLF SFSNPKCPISSSSSSS  LPRSATDFAASSQALT IRFPR IGAGLALDSK
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSK 60

Query: 61  TMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVE 120
           TMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVE
Sbjct: 61  TMVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVE 120

Query: 121 WITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT 180
           WITAMALVWQYGEKSG+ESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT
Sbjct: 121 WITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILT 180

Query: 181 AVGNATMCIAAFRIYKASQERSSKL 203
           AVGNATMCIAAFRIYKASQERSSKL
Sbjct: 181 AVGNATMCIAAFRIYKASQERSSKL 205

[Close]

BLAST of Cp4.1LG08g07650 vs. NCBI nr
Match: XP_022152779.1 (uncharacterized protein LOC111020415 [Momordica charantia])

HSP 1 Score: 324 bits (830), Expect = 2.06e-110
Identity = 177/203 (87.19%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           M LTSTL HSFSNPKCPISSSSSSS PRS  DFAA S+   GIRF R IGAGL LDSK+M
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSR-DFAAPSKXPPGIRFRRIIGAGLVLDSKSM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVL+GTG TLALLGPESA+A A   ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLLGTGFTLALLGPESASAAA---ELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV
Sbjct: 121 TAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYK SQERS  L
Sbjct: 181 GNATMCIAAFRIYK-SQERSRNL 198

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy TrEMBL
Match: A0A6J1KVA7 (uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507 PE=4 SV=1)

HSP 1 Score: 375 bits (963), Expect = 6.18e-131
Identity = 200/203 (98.52%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           MSLTSTL HSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPR IGAGLALDSKTM
Sbjct: 1   MSLTSTLLHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRIIGAGLALDSKTM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVLIGTGLTLALLGPESAAATAA TELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLIGTGLTLALLGPESAAATAA-TELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYKASQERSSKL
Sbjct: 181 GNATMCIAAFRIYKASQERSSKL 202

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy TrEMBL
Match: A0A6J1FXT1 (uncharacterized protein LOC111448709 OS=Cucurbita moschata OX=3662 GN=LOC111448709 PE=4 SV=1)

HSP 1 Score: 370 bits (951), Expect = 4.48e-129
Identity = 199/204 (97.55%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSS-LPRSATDFAASSQALTGIRFPRTIGAGLALDSKT 60
           MSLTSTLF SFSNPKCPISSSSSSS LPRSATDFAASSQALT IRFPR IGAGLALDSKT
Sbjct: 1   MSLTSTLFRSFSNPKCPISSSSSSSSLPRSATDFAASSQALTRIRFPRIIGAGLALDSKT 60

Query: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120
           MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW
Sbjct: 61  MVVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 120

Query: 121 ITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180
           ITAMALVWQYGEKSG+ESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA
Sbjct: 121 ITAMALVWQYGEKSGDESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 180

Query: 181 VGNATMCIAAFRIYKASQERSSKL 203
           VGNATMCIAAFRIYKASQERSSKL
Sbjct: 181 VGNATMCIAAFRIYKASQERSSKL 204

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy TrEMBL
Match: A0A6J1DH09 (uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020415 PE=4 SV=1)

HSP 1 Score: 324 bits (830), Expect = 9.98e-111
Identity = 177/203 (87.19%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           M LTSTL HSFSNPKCPISSSSSSS PRS  DFAA S+   GIRF R IGAGL LDSK+M
Sbjct: 1   MPLTSTLLHSFSNPKCPISSSSSSSPPRSR-DFAAPSKXPPGIRFRRIIGAGLVLDSKSM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVL+GTG TLALLGPESA+A A   ELQ+LGASSLQFNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLLGTGFTLALLGPESASAAA---ELQALGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV
Sbjct: 121 TAMALVWQYGEKSGNEAWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYK SQERS  L
Sbjct: 181 GNATMCIAAFRIYK-SQERSRNL 198

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy TrEMBL
Match: A0A1S3BLS2 (ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1)

HSP 1 Score: 274 bits (700), Expect = 4.14e-91
Identity = 155/203 (76.35%), Postives = 165/203 (81.28%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           MSLTS L +SFS PK P        LP S TDFA ++Q  TG+ F R I   L   SK M
Sbjct: 1   MSLTSPLLYSFSIPKSP--------LPIS-TDFAPTTQLPTGVSFRRPISR-LGFPSKAM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVL+GTG TLALLGPESA+A   ATELQS    SL FNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLLGTGFTLALLGPESASA---ATELQS----SLLFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVA+QA+LTA+
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAI 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYK+SQERS  L
Sbjct: 181 GNATMCIAAFRIYKSSQERSKNL 186

[Close]

BLAST of Cp4.1LG08g07650 vs. ExPASy TrEMBL
Match: A0A0A0L4G0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036550 PE=4 SV=1)

HSP 1 Score: 273 bits (697), Expect = 1.18e-90
Identity = 155/203 (76.35%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           MSLTS L +SFS PK P        LP S TDFA + Q  TG+ F R I   L   SKTM
Sbjct: 1   MSLTSPLLYSFSIPKSP--------LPIS-TDFAPTFQLPTGVSFRRPISR-LGFPSKTM 60

Query: 61  VVLIGTGLTLALLGPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEWI 120
           VVL+GTG TLALLGPESA+A   ATEL S    SL FNEPQNALSLPTWAIHVSSVVEWI
Sbjct: 61  VVLLGTGFTLALLGPESASA---ATELSS----SLLFNEPQNALSLPTWAIHVSSVVEWI 120

Query: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTAV 180
           TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVA+QA+LTA+
Sbjct: 121 TAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVAIQAMLTAI 180

Query: 181 GNATMCIAAFRIYKASQERSSKL 203
           GNATMCIAAFRIYK+SQERS  L
Sbjct: 181 GNATMCIAAFRIYKSSQERSKNL 186

[Close]

BLAST of Cp4.1LG08g07650 vs. TAIR 10
Match: AT4G22830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634). )

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-47
Identity = 96/139 (69.06%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 63  LIGTGLTLALL---GPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVVEW 122
           LIGT L  A     GP++ A  A           SLQ +EP NALSLPTWA+HVSSVVEW
Sbjct: 64  LIGTSLVAAAFITAGPDATALAAV--------VDSLQLSEPSNALSLPTWAVHVSSVVEW 123

Query: 123 ITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAILTA 182
           ITAMALVW+YGE+ G ESWKGLSWGMVPLLGGA CACTWHFFYN ESLEVLVALQA LT 
Sbjct: 124 ITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTV 183

Query: 183 VGNATMCIAAFRIYKASQE 199
            GN T+CIAAFRI K S +
Sbjct: 184 FGNITLCIAAFRINKLSSK 194

[Close]

BLAST of Cp4.1LG08g07650 vs. TAIR 10
Match: AT4G22830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). )

HSP 1 Score: 181.0 bits (458), Expect = 9.4e-46
Identity = 111/201 (55.22%), Postives = 126/201 (62.69%), Query Frame = 0


Query: 1   MSLTSTLFHSFSNPKCPISSSSSSSLPRSATDFAASSQALTGIRFPRTIGAGLALDSKTM 60
           M++ ST    F   K       S S P  A+    S++ +  IR    I   +AL     
Sbjct: 1   MAIASTATVLFCCAKPNFRRIHSESRP--ASSLTTSNEPVIRIRSRSLIHDPVALSG--- 60

Query: 61  VVLIGTGLTLALL---GPESAAATAAATELQSLGASSLQFNEPQNALSLPTWAIHVSSVV 120
             LIGT L  A     GP++ A  A           SLQ +EP NALSLPTWA+HVSSVV
Sbjct: 61  --LIGTSLVAAAFITAGPDATALAAV--------VDSLQLSEPSNALSLPTWAVHVSSVV 120

Query: 121 EWITAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTWHFFYNSESLEVLVALQAIL 180
           EWITAMALVW+YGE+ G ESWKGLSWGMVPLLGGA CACTWHFFYN ESLEVLVALQA L
Sbjct: 121 EWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAAL 180

Query: 181 TAVGNATMCIAAFRIYKASQE 199
           T  GN T+CIAAFRI K S +
Sbjct: 181 TVFGNITLCIAAFRINKLSSK 186

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55720	2.3e-28	57.00	Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P15811	2.2e-07	36.56	Uncharacterized protein ycf49 OS=Cyanophora paradoxa OX=2762 GN=ycf49 PE=3 SV=1	[more]
Q9TM18	2.3e-04	34.94	Uncharacterized protein ycf49 OS=Cyanidium caldarium OX=2771 GN=ycf49 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g07650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539827.1	1.01e-134	100.00	uncharacterized protein LOC111800391 [Cucurbita pepo subsp. pepo]	[more]
XP_023005556.1	1.28e-130	98.52	uncharacterized protein LOC111498507 [Cucurbita maxima]	[more]
XP_022944188.1	9.25e-129	97.55	uncharacterized protein LOC111448709 [Cucurbita moschata]	[more]
KAG6596827.1	1.36e-128	97.07	hypothetical protein SDJN03_10007, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022152779.1	2.06e-110	87.19	uncharacterized protein LOC111020415 [Momordica charantia]	[more]

BLAST of Cp4.1LG08g07650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVA7	6.18e-131	98.52	uncharacterized protein LOC111498507 OS=Cucurbita maxima OX=3661 GN=LOC111498507...	[more]
A0A6J1FXT1	4.48e-129	97.55	uncharacterized protein LOC111448709 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1DH09	9.98e-111	87.19	uncharacterized protein LOC111020415 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A1S3BLS2	4.14e-91	76.35	ycf49-like protein OS=Cucumis melo OX=3656 GN=LOC103490947 PE=4 SV=1	[more]
A0A0A0L4G0	1.18e-90	76.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036550 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g07650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22830.2	3.8e-47	69.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G22830.1	9.4e-46	55.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019634	Uncharacterised protein family Ycf49	PFAM	PF10693	DUF2499	coord: 103..190 e-value: 4.5E-39 score: 132.6
None	No IPR available	PANTHER	PTHR33833	NUCLEOLAR-LIKE PROTEIN-RELATED	coord: 35..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07650.1	Cp4.1LG08g07650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane