Cp4.1LG08g07410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g07410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3
Location	Cp4.1LG08: 5810449 .. 5811222 (+)
RNA-Seq Expression	Cp4.1LG08g07410
Synteny	Cp4.1LG08g07410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTATTTCTCTTTATCCTTTTATTTCTCCTTGTTTCTGTAAATTATGTCGTTGCACTTCTTTATTTTTCTGATTGGTTCTACTTCTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACGTTCTTTCTGGCATAAATTGGTACAATTATAGTTTAGAAGTTTAGAGTACTGGATTGCTACTGATGCTTTAGGAAGTTTTTGGTCAACTTGTATAAAAATGGAAGTCAAACTGAAGCTAGATCGTTTATAAGTTGACCATTCCAGGAAGAGAAACCATCCTAGTTTTGGTTCTCCCTTTTTTGGTTTCTTTCTTTATTGGTTTCAACTTTTGTACCCCAGTTCAACTGGTCTTTGTCTCAAGTAAAATTAATTACTAGAACAATAAGGAGAGAATGAATGGAATGACTTTGGTTCTTGACTGGGGACCTTGAAACTGACTGGAGTATTTGGTTCCTGCAGGCACATAATAGCAATTGTCAATATGCTTGA

mRNA sequence

ATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGCACATAATAGCAATTGTCAATATGCTTGA

Coding sequence (CDS)

ATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACACTTCTCCGTACAGCTTCTCCGGCCAAATCTCCATCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGCACATAATAGCAATTGTCAATATGCTTGA

Protein sequence

MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCVQSLLPFHNAAHNSNCQYA

Homology

[Close]

BLAST of Cp4.1LG08g07410 vs. NCBI nr
Match: XP_023538762.1 (uncharacterized protein LOC111799595 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (311), Expect = 5.72e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. NCBI nr
Match: XP_023538761.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (311), Expect = 5.89e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. NCBI nr
Match: XP_023538758.1 (uncharacterized protein LOC111799595 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538760.1 uncharacterized protein LOC111799595 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (311), Expect = 6.25e-35
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. NCBI nr
Match: XP_022937856.1 (uncharacterized protein LOC111444048 isoform X2 [Cucurbita moschata])

HSP 1 Score: 122 bits (305), Expect = 4.84e-34
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. NCBI nr
Match: XP_022937781.1 (uncharacterized protein LOC111444048 isoform X1 [Cucurbita moschata])

HSP 1 Score: 122 bits (305), Expect = 5.14e-34
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. ExPASy TrEMBL
Match: A0A6J1FBJ4 (uncharacterized protein LOC111444048 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444048 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.34e-34
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. ExPASy TrEMBL
Match: A0A6J1FBC3 (uncharacterized protein LOC111444048 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444048 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.49e-34
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQSSFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. ExPASy TrEMBL
Match: A0A6J1L2N2 (uncharacterized protein LOC111498548 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498548 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 3.56e-29
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQSSFRT+LRT SP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. ExPASy TrEMBL
Match: A0A6J1KTL9 (uncharacterized protein LOC111498548 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498548 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 3.77e-29
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASR+SQSSFRT+LRT SP KSPSS F LP KSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRLSQSSFRTVLRTNSPPKSPSSKFSLPSKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. ExPASy TrEMBL
Match: A0A6J1DJ71 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021400 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 5.89e-28
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC RIASRISQSSFR  +RT SP KSPSS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNA 69
          QSLLPFHNA
Sbjct: 61 QSLLPFHNA 69

[Close]

BLAST of Cp4.1LG08g07410 vs. TAIR 10
Match: AT5G47455.5 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7  RIASRISQSSFRTLLRT----------ASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
          R  SR S SSF++ +R+          +SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHN---AAHNSNC 76
          LGCVQSLLP H+   AA  ++C
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSC 85

[Close]

BLAST of Cp4.1LG08g07410 vs. TAIR 10
Match: AT5G47455.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 147 Blast hits to 147 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7  RIASRISQSSFRTLLRT----------ASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
          R  SR S SSF++ +R+          +SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHN---AAHNSNC 76
          LGCVQSLLP H+   AA  ++C
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSC 85

[Close]

BLAST of Cp4.1LG08g07410 vs. TAIR 10
Match: AT5G47455.4 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 125 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7  RIASRISQSSFRTLLRT----------ASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
          R  SR S SSF++ +R+          +SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHN---AAHNSNC 76
          LGCVQSLLP H+   AA  ++C
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSC 85

[Close]

BLAST of Cp4.1LG08g07410 vs. TAIR 10
Match: AT5G47455.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 138 Blast hits to 138 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7  RIASRISQSSFRTLLRT----------ASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
          R  SR S SSF++ +R+          +SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHN---AAHNSNC 76
          LGCVQSLLP H+   AA  ++C
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSC 85

[Close]

BLAST of Cp4.1LG08g07410 vs. TAIR 10
Match: AT5G47455.6 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7  RIASRISQSSFRTLLRT----------ASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
          R  SR S SSF++ +R+          +SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHN---AAHNSNC 76
          LGCVQSLLP H+   AA  ++C
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSC 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g07410 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g07410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538762.1	5.72e-35	100.00	uncharacterized protein LOC111799595 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023538761.1	5.89e-35	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
XP_023538758.1	6.25e-35	100.00	uncharacterized protein LOC111799595 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022937856.1	4.84e-34	98.55	uncharacterized protein LOC111444048 isoform X2 [Cucurbita moschata]	[more]
XP_022937781.1	5.14e-34	98.55	uncharacterized protein LOC111444048 isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG08g07410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBJ4	2.34e-34	98.55	uncharacterized protein LOC111444048 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FBC3	2.49e-34	98.55	uncharacterized protein LOC111444048 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1L2N2	3.56e-29	88.41	uncharacterized protein LOC111498548 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KTL9	3.77e-29	88.41	uncharacterized protein LOC111498548 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DJ71	5.89e-28	85.51	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]

BLAST of Cp4.1LG08g07410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47455.5	8.7e-08	43.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G47455.1	8.7e-08	43.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G47455.4	8.7e-08	43.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G47455.3	8.7e-08	43.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G47455.6	8.7e-08	43.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..47
None	No IPR available	PANTHER	PTHR33156:SF9	OS02G0658300 PROTEIN	coord: 1..70
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g07410.1	Cp4.1LG08g07410.1	mRNA