Cp4.1LG08g07210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g07210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG08: 5643555 .. 5645702 (-)
RNA-Seq ExpressionCp4.1LG08g07210
SyntenyCp4.1LG08g07210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATCAATCTTAGAAACTCAAGGGCATACGCCCAATTTTCCCCATCTCTATTCCGCCGTATCCAGAACCTTCATGTCAATTCGAATGAAGAATGGTCTCCCATTTCTTCTTCCAACCACTCACCACGAAGAACCCATTTGGTTTCCCCCAATAACATGACCCCAAAAGTTCATGCTCAACCCACTTCTGACGTTGTTTCGTTGAATAAATCAATCACCAACTTTGTTAGGGCTGGGGATTTAGAATCTGCCCACAAAGTGTTCGACAAAATGCCTGTTAGAACCACGGTTACATGGAATTCAATTCTGTCGGGATATACGAAAGTCGCTGGGAAAATGAAGGAAGCCCGTGAAGTGTTTGATAAAATTCCTGAACCAGATTCTGTATCTTATAACATCATGTTGGCTTGTTATTTGAGAAACTGTGGTGTTGAGGCTGCTTTGGCCTTCTTTAACACGATGCCTGTCAAGGATATTGCCTCTTGGAATACATTGATATCTGGGTTTGCCCGGAATGGGCAAATGAAAGAAGCGTTTGACTTGTTTTCGGTAATGCCGGAGAAAAATGGTGTCTCATGGAGTGCCATGATTTCTGGATATGTGGAATATGGAGATTTGGAGGCAGCTGAGGAGTTGTATAAGAATGCGTTTATCAAGAGCGTGGTTGTGGAGACTGCAATGCTTACAGGGTATATGAAGTTTGGGAAGGTGGAGTTAGCTGAAAGGATATTTCAAAGGATGGCTGTGAGGAATTTGGTCACATGGAACTCTATGATAGCAGGTTATGTTGAGAACTGTCGCGCGGAGGATGGTTTGAAGCTCTTCAAGGCAATGATTGAATCTCGGGCGAGGCCGAATCCTTCGAGTATGAGCAGTGTTCTTCTTTGCTGTAGCAACTTGTCTTCTTTGCCTATGGGAAGGCAAGTACATAATATGGTGAGTAAATCTCCACTATCCAAAGACATAACTGCTTGTACTTCATTGATTAGCATGTACTGCAAGTGTGGAGATCTGGATAGTGCCTGGAAGTTGTTTGTAGAGATGCCACTAAAGGATGTGATTACATGGAATGCCATGATTTCTGGTTATGCTCAACACGGTGCAGGTCGAAAAGCCCTTCATTTGTTCGACGAGATGAGACACGGAGCAATGAAACCAGATTGGATCACATTCGTTGCTGTTCTATTAGCCTGTAACCATGCCGGATTTGTTGATCTCGGGGTTCGATATTTCAAGTCGATGAAGGAGTTTGGAATTGAAGCAAAACCAGACCACTACACATGTGTAATAGACCTTCTCGGTCGAGCTGGTAAGCTCGATGAAGCTGTAAGTATGATCAATGAGATGCCATTCAAGCCTCATGCTGCAATCTTTGGAACTCTCTTGGGTGCCTGTAGAATCCACAAAAACCTGGATATGGCAGAATTTGCAGCCAAGAATTTGTTAGAACTTGACCCCAAGAGTGCCACCGGATACGTACAGCTTGCTAATATCTACGCATCGACGAACAAATGGGATCGAGTGGCTAAAGTGAGGAAGATGATGAAAGAACACAATGTAGTTAAAATACCGGGTTACAGTTGGATCGAGATCAAGAGTGTAACTCATGAATTCAGATCAGGTGACAGAATTCATCCAGAATTGACATCAATACACAACAAACTAAATGAGTTAGATGGGAAAATGAAGGTGGCTGGGTATGTTCCAGACCTTGAATTTGTACTGCATGATGTAGAAGAAGAACACAAAGAGAAGCTACTACTATGGCACAGTGAAAAACTGGCGATTGCTTTCGGATTGATAAAAACAGCGCCCGGGACTCCGATTCGAGTTTTTAAAAACTTGAGAGTGTGTGGGGATTGTCACAGAGCAATAAAGTTCATATCGGAGATTGAGAAAAGGGAGATTATTGTGAGAGACACTACAAGGTTTCATCATTTTAGAAATGGTATCTGCTCTTGTGGTGATTACTGGTAACCTATTTCTTTCTTTCTTGTTTCTTGTTTCTTGTTTCTGAAAATGAGCAAGATTTTTGGTTGTCTTTTGGGCAGCACGCATAGATTTCAATGACGGATATTCACACGTTTTTTCAAATTAGATGAATGGATTGAAGGTGGTTCTTCTGCAAACATTCTTTGGGATTGA

mRNA sequence

ATGATCATCAATCTTAGAAACTCAAGGGCATACGCCCAATTTTCCCCATCTCTATTCCGCCGTATCCAGAACCTTCATGTCAATTCGAATGAAGAATGGTCTCCCATTTCTTCTTCCAACCACTCACCACGAAGAACCCATTTGGTTTCCCCCAATAACATGACCCCAAAAGTTCATGCTCAACCCACTTCTGACGTTGTTTCGTTGAATAAATCAATCACCAACTTTGTTAGGGCTGGGGATTTAGAATCTGCCCACAAAGTGTTCGACAAAATGCCTGTTAGAACCACGGTTACATGGAATTCAATTCTGTCGGGATATACGAAAGTCGCTGGGAAAATGAAGGAAGCCCGTGAAGTGTTTGATAAAATTCCTGAACCAGATTCTGTATCTTATAACATCATGTTGGCTTGTTATTTGAGAAACTGTGGTGTTGAGGCTGCTTTGGCCTTCTTTAACACGATGCCTGTCAAGGATATTGCCTCTTGGAATACATTGATATCTGGGTTTGCCCGGAATGGGCAAATGAAAGAAGCGTTTGACTTGTTTTCGGTAATGCCGGAGAAAAATGGTGTCTCATGGAGTGCCATGATTTCTGGATATGTGGAATATGGAGATTTGGAGGCAGCTGAGGAGTTGTATAAGAATGCGTTTATCAAGAGCGTGGTTGTGGAGACTGCAATGCTTACAGGGTATATGAAGTTTGGGAAGGTGGAGTTAGCTGAAAGGATATTTCAAAGGATGGCTGTGAGGAATTTGGTCACATGGAACTCTATGATAGCAGGTTATGTTGAGAACTGTCGCGCGGAGGATGGTTTGAAGCTCTTCAAGGCAATGATTGAATCTCGGGCGAGGCCGAATCCTTCGAATGAATGGATTGAAGGTGGTTCTTCTGCAAACATTCTTTGGGATTGA

Coding sequence (CDS)

ATGATCATCAATCTTAGAAACTCAAGGGCATACGCCCAATTTTCCCCATCTCTATTCCGCCGTATCCAGAACCTTCATGTCAATTCGAATGAAGAATGGTCTCCCATTTCTTCTTCCAACCACTCACCACGAAGAACCCATTTGGTTTCCCCCAATAACATGACCCCAAAAGTTCATGCTCAACCCACTTCTGACGTTGTTTCGTTGAATAAATCAATCACCAACTTTGTTAGGGCTGGGGATTTAGAATCTGCCCACAAAGTGTTCGACAAAATGCCTGTTAGAACCACGGTTACATGGAATTCAATTCTGTCGGGATATACGAAAGTCGCTGGGAAAATGAAGGAAGCCCGTGAAGTGTTTGATAAAATTCCTGAACCAGATTCTGTATCTTATAACATCATGTTGGCTTGTTATTTGAGAAACTGTGGTGTTGAGGCTGCTTTGGCCTTCTTTAACACGATGCCTGTCAAGGATATTGCCTCTTGGAATACATTGATATCTGGGTTTGCCCGGAATGGGCAAATGAAAGAAGCGTTTGACTTGTTTTCGGTAATGCCGGAGAAAAATGGTGTCTCATGGAGTGCCATGATTTCTGGATATGTGGAATATGGAGATTTGGAGGCAGCTGAGGAGTTGTATAAGAATGCGTTTATCAAGAGCGTGGTTGTGGAGACTGCAATGCTTACAGGGTATATGAAGTTTGGGAAGGTGGAGTTAGCTGAAAGGATATTTCAAAGGATGGCTGTGAGGAATTTGGTCACATGGAACTCTATGATAGCAGGTTATGTTGAGAACTGTCGCGCGGAGGATGGTTTGAAGCTCTTCAAGGCAATGATTGAATCTCGGGCGAGGCCGAATCCTTCGAATGAATGGATTGAAGGTGGTTCTTCTGCAAACATTCTTTGGGATTGA

Protein sequence

MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSNEWIEGGSSANILWD
Homology
BLAST of Cp4.1LG08g07210 vs. ExPASy Swiss-Prot
Match: Q9M4P3 (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3)

HSP 1 Score: 266.2 bits (679), Expect = 4.7e-70
Identity = 137/254 (53.94%), Postives = 178/254 (70.08%), Query Frame = 0

Query: 37  SSSNHSPRRTHLVSPNNMTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRT 96
           SSS+ S     LV  + +T          +  LNK I   VR+GD++ A +VF  M  + 
Sbjct: 35  SSSSCSSPEPSLVRSDYLT---KPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKN 94

Query: 97  TVTWNSILSGYTKVAGKMKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMP 156
           T+TWNS+L G +K   +M EA ++FD+IPEPD+ SYNIML+CY+RN   E A +FF+ MP
Sbjct: 95  TITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP 154

Query: 157 VKDIASWNTLISGFARNGQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKN 216
            KD ASWNT+I+G+AR G+M++A +LF  M EKN VSW+AMISGY+E GDLE A   +K 
Sbjct: 155 FKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKV 214

Query: 217 AFIKSVVVETAMLTGYMKFGKVELAERIFQRMAV-RNLVTWNSMIAGYVENCRAEDGLKL 276
           A ++ VV  TAM+TGYMK  KVELAE +F+ M V +NLVTWN+MI+GYVEN R EDGLKL
Sbjct: 215 APVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKL 274

Query: 277 FKAMIESRARPNPS 290
           F+AM+E   RPN S
Sbjct: 275 FRAMLEEGIRPNSS 285

BLAST of Cp4.1LG08g07210 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-41
Identity = 82/210 (39.05%), Postives = 134/210 (63.81%), Query Frame = 0

Query: 73  ITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFDKI-PEPDSVS 132
           I    + G +  A K+FD +P R  VTW  +++GY K+ G M+EARE+FD++    + V+
Sbjct: 53  IGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKL-GDMREARELFDRVDSRKNVVT 112

Query: 133 YNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPEKNG 192
           +  M++ YLR+  +  A   F  MP +++ SWNT+I G+A++G++ +A +LF  MPE+N 
Sbjct: 113 WTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI 172

Query: 193 VSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRMAVR 252
           VSW++M+   V+ G ++ A  L++    + VV  TAM+ G  K GKV+ A R+F  M  R
Sbjct: 173 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 232

Query: 253 NLVTWNSMIAGYVENCRAEDGLKLFKAMIE 282
           N+++WN+MI GY +N R ++  +LF+ M E
Sbjct: 233 NIISWNAMITGYAQNNRIDEADQLFQVMPE 261

BLAST of Cp4.1LG08g07210 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-41
Identity = 93/267 (34.83%), Postives = 158/267 (59.18%), Query Frame = 0

Query: 17  SLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMT--PKVHAQP-----TSDVVSL 76
           +L RR Q LH  S        ++ H     H +     T   K   +P      SD+   
Sbjct: 8   ALSRRAQQLHYTSLNGLKRRCNNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEW 67

Query: 77  NKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFDKIPEPDS 136
           N +I++++R G    A +VF +MP  ++V++N ++SGY +  G+ + AR++FD++PE D 
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLR-NGEFELARKLFDEMPERDL 127

Query: 137 VSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPEK 196
           VS+N+M+  Y+RN  +  A   F  MP +D+ SWNT++SG+A+NG + +A  +F  MPEK
Sbjct: 128 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 187

Query: 197 NGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRMA 256
           N VSW+A++S YV+   +E A  L+K+    ++V    +L G++K  K+  A + F  M 
Sbjct: 188 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 247

Query: 257 VRNLVTWNSMIAGYVENCRAEDGLKLF 277
           VR++V+WN++I GY ++ + ++  +LF
Sbjct: 248 VRDVVSWNTIITGYAQSGKIDEARQLF 273

BLAST of Cp4.1LG08g07210 vs. ExPASy Swiss-Prot
Match: Q9FXB9 (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.3e-39
Identity = 83/219 (37.90%), Postives = 128/219 (58.45%), Query Frame = 0

Query: 63  TSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFD 122
           TS  V+ +  I+   R G +  A K FD +  +   +WNSI+SGY    G  KEAR++FD
Sbjct: 14  TSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS-NGLPKEARQLFD 73

Query: 123 KIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDL 182
           ++ E + VS+N +++ Y++N  +  A   F  MP +++ SW  ++ G+ + G + EA  L
Sbjct: 74  EMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESL 133

Query: 183 FSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAE 242
           F  MPE+N VSW+ M  G ++ G ++ A +LY    +K VV  T M+ G  + G+V+ A 
Sbjct: 134 FWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEAR 193

Query: 243 RIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE 282
            IF  M  RN+VTW +MI GY +N R +   KLF+ M E
Sbjct: 194 LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231

BLAST of Cp4.1LG08g07210 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-38
Identity = 76/213 (35.68%), Postives = 133/213 (62.44%), Query Frame = 0

Query: 70  NKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKM-KEAREVFDKIPEPD 129
           N  IT+  R G +  A K+FD    ++  +WNS+++GY   A  M ++AR++FD++P+ +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGY--FANLMPRDARKLFDEMPDRN 80

Query: 130 SVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPE 189
            +S+N +++ Y++N  ++ A   F+ MP +++ SW  L+ G+  NG++  A  LF  MPE
Sbjct: 81  IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 140

Query: 190 KNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRM 249
           KN VSW+ M+ G+++ G ++ A +LY+    K  +  T+M+ G  K G+V+ A  IF  M
Sbjct: 141 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 200

Query: 250 AVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE 282
           + R+++TW +M+ GY +N R +D  K+F  M E
Sbjct: 201 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPE 231

BLAST of Cp4.1LG08g07210 vs. NCBI nr
Match: XP_023538963.1 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 579 bits (1492), Expect = 2.04e-202
Identity = 289/290 (99.66%), Postives = 290/290 (100.00%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60
           MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60

Query: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120
           QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV
Sbjct: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120

Query: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180
           FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF
Sbjct: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180

Query: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240
           DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL
Sbjct: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240

Query: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPS+
Sbjct: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSS 290

BLAST of Cp4.1LG08g07210 vs. NCBI nr
Match: KAG7030155.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 566 bits (1460), Expect = 1.45e-197
Identity = 283/290 (97.59%), Postives = 288/290 (99.31%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60
           MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEE SPIS SNHSPRRTHLVSPNNMTP+VHA
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEESSPISCSNHSPRRTHLVSPNNMTPRVHA 60

Query: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120
           QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYT+VAGKMKEAREV
Sbjct: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTRVAGKMKEAREV 120

Query: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180
           FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF
Sbjct: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180

Query: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240
           DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL
Sbjct: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240

Query: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           AERIF+RMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE+RARPNPS+
Sbjct: 241 AERIFRRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIETRARPNPSS 290

BLAST of Cp4.1LG08g07210 vs. NCBI nr
Match: KAG6596879.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 564 bits (1454), Expect = 1.18e-196
Identity = 282/290 (97.24%), Postives = 287/290 (98.97%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60
           MIINLRNSRAYAQF PSLFRRIQNLHVNSNEE SPIS SNHSPRRTHLVSPNNMTP+VHA
Sbjct: 1   MIINLRNSRAYAQFFPSLFRRIQNLHVNSNEESSPISCSNHSPRRTHLVSPNNMTPRVHA 60

Query: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120
           QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYT+VAGKMKEAREV
Sbjct: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTRVAGKMKEAREV 120

Query: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180
           FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF
Sbjct: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180

Query: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240
           DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL
Sbjct: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240

Query: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           AERIF+RMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE+RARPNPS+
Sbjct: 241 AERIFRRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIETRARPNPSS 290

BLAST of Cp4.1LG08g07210 vs. NCBI nr
Match: XP_022942378.1 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 561 bits (1446), Expect = 1.93e-195
Identity = 281/290 (96.90%), Postives = 286/290 (98.62%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60
           MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEE SPIS SNHSPRRTHLVSPNNMTP+VH 
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEESSPISCSNHSPRRTHLVSPNNMTPRVHV 60

Query: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120
           Q TSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV
Sbjct: 61  QTTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120

Query: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180
           FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFAR+GQMKEAF
Sbjct: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARHGQMKEAF 180

Query: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240
           DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL
Sbjct: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240

Query: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           AERIF+RMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE+RARPNPS+
Sbjct: 241 AERIFRRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIETRARPNPSS 290

BLAST of Cp4.1LG08g07210 vs. NCBI nr
Match: XP_023005325.1 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 554 bits (1428), Expect = 1.30e-192
Identity = 281/297 (94.61%), Postives = 285/297 (95.96%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRR-------IQNLHVNSNEEWSPISSSNHSPRRTHLVSPNN 60
           MIINLRNSRAYAQFSPSLFRR       IQNLHVNSNEE SPIS SNHSPRRTHLVSPNN
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRFFPTESHIQNLHVNSNEESSPISCSNHSPRRTHLVSPNN 60

Query: 61  MTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120
           MTPKVH QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK
Sbjct: 61  MTPKVHVQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120

Query: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180
           MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN
Sbjct: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180

Query: 181 GQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM 240
           GQMK+AFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM
Sbjct: 181 GQMKDAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM 240

Query: 241 KFGKVELAERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           KFGKVELAERIF+RMAVRNLVTWNSMIAGYVENCR+ DGLKLFKAMIESRARPN S+
Sbjct: 241 KFGKVELAERIFRRMAVRNLVTWNSMIAGYVENCRSNDGLKLFKAMIESRARPNSSS 297

BLAST of Cp4.1LG08g07210 vs. ExPASy TrEMBL
Match: A0A6J1FUN8 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447411 PE=3 SV=1)

HSP 1 Score: 561 bits (1446), Expect = 9.34e-196
Identity = 281/290 (96.90%), Postives = 286/290 (98.62%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60
           MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEE SPIS SNHSPRRTHLVSPNNMTP+VH 
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEESSPISCSNHSPRRTHLVSPNNMTPRVHV 60

Query: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120
           Q TSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV
Sbjct: 61  QTTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120

Query: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180
           FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFAR+GQMKEAF
Sbjct: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARHGQMKEAF 180

Query: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240
           DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL
Sbjct: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240

Query: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           AERIF+RMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE+RARPNPS+
Sbjct: 241 AERIFRRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIETRARPNPSS 290

BLAST of Cp4.1LG08g07210 vs. ExPASy TrEMBL
Match: A0A6J1KX44 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498358 PE=3 SV=1)

HSP 1 Score: 554 bits (1428), Expect = 6.29e-193
Identity = 281/297 (94.61%), Postives = 285/297 (95.96%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRR-------IQNLHVNSNEEWSPISSSNHSPRRTHLVSPNN 60
           MIINLRNSRAYAQFSPSLFRR       IQNLHVNSNEE SPIS SNHSPRRTHLVSPNN
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRFFPTESHIQNLHVNSNEESSPISCSNHSPRRTHLVSPNN 60

Query: 61  MTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120
           MTPKVH QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK
Sbjct: 61  MTPKVHVQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120

Query: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180
           MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN
Sbjct: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180

Query: 181 GQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM 240
           GQMK+AFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM
Sbjct: 181 GQMKDAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM 240

Query: 241 KFGKVELAERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           KFGKVELAERIF+RMAVRNLVTWNSMIAGYVENCR+ DGLKLFKAMIESRARPN S+
Sbjct: 241 KFGKVELAERIFRRMAVRNLVTWNSMIAGYVENCRSNDGLKLFKAMIESRARPNSSS 297

BLAST of Cp4.1LG08g07210 vs. ExPASy TrEMBL
Match: A0A6J1FRC9 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447411 PE=3 SV=1)

HSP 1 Score: 496 bits (1278), Expect = 1.15e-170
Identity = 255/290 (87.93%), Postives = 260/290 (89.66%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMTPKVHA 60
           MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEE SPIS SNHSPRRTHLVSPNNMTP+VH 
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRIQNLHVNSNEESSPISCSNHSPRRTHLVSPNNMTPRVHV 60

Query: 61  QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120
           Q TSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV
Sbjct: 61  QTTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREV 120

Query: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAF 180
           FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFAR+GQMKEAF
Sbjct: 121 FDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARHGQMKEAF 180

Query: 181 DLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVEL 240
           DLFSVMPEKNGVSWS                          VVVETAMLTGYMKFGKVEL
Sbjct: 181 DLFSVMPEKNGVSWS--------------------------VVVETAMLTGYMKFGKVEL 240

Query: 241 AERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           AERIF+RMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE+RARPNPS+
Sbjct: 241 AERIFRRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIETRARPNPSS 264

BLAST of Cp4.1LG08g07210 vs. ExPASy TrEMBL
Match: A0A6J1KST8 (pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498358 PE=3 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 7.61e-168
Identity = 255/297 (85.86%), Postives = 259/297 (87.21%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRR-------IQNLHVNSNEEWSPISSSNHSPRRTHLVSPNN 60
           MIINLRNSRAYAQFSPSLFRR       IQNLHVNSNEE SPIS SNHSPRRTHLVSPNN
Sbjct: 1   MIINLRNSRAYAQFSPSLFRRFFPTESHIQNLHVNSNEESSPISCSNHSPRRTHLVSPNN 60

Query: 61  MTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120
           MTPKVH QPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK
Sbjct: 61  MTPKVHVQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120

Query: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180
           MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN
Sbjct: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180

Query: 181 GQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM 240
           GQMK+AFDLFSVMPEKNGVSWS                          VVVETAMLTGYM
Sbjct: 181 GQMKDAFDLFSVMPEKNGVSWS--------------------------VVVETAMLTGYM 240

Query: 241 KFGKVELAERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNPSN 290
           KFGKVELAERIF+RMAVRNLVTWNSMIAGYVENCR+ DGLKLFKAMIESRARPN S+
Sbjct: 241 KFGKVELAERIFRRMAVRNLVTWNSMIAGYVENCRSNDGLKLFKAMIESRARPNSSS 271

BLAST of Cp4.1LG08g07210 vs. ExPASy TrEMBL
Match: A0A0A0L243 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G017270 PE=3 SV=1)

HSP 1 Score: 466 bits (1199), Expect = 2.96e-158
Identity = 236/295 (80.00%), Postives = 258/295 (87.46%), Query Frame = 0

Query: 1   MIINLRNSRAYAQFSPSLFRRI-------QNLHVNSNEEWSPISSSNHSPRRTHLVSPNN 60
           MIIN  NSRAYA+F  SLFR         +NLH+ SNEE S I+SS H PRR HLVSPNN
Sbjct: 1   MIINFSNSRAYAKFPSSLFRHFLPIEAHFRNLHLGSNEESSSIASSIHPPRRIHLVSPNN 60

Query: 61  MTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGK 120
           +TP +H    SDVVSLNK+I +FVRA DLESA  VF+KM VRTTVTWN++LSGYTKVAGK
Sbjct: 61  VTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGK 120

Query: 121 MKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARN 180
           +KEA E+FDKIPEPDSVSYNIML CYLR+ GV+AALAFFN MPVKDIASWNTLISGFA+N
Sbjct: 121 VKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQN 180

Query: 181 GQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYM 240
           GQM++AFDLFSVMPEKNGVSWSAMISGYVE+GDLEAAEELYKN  +KSVVVETAMLTGYM
Sbjct: 181 GQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYM 240

Query: 241 KFGKVELAERIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIESRARPNP 288
           KFGKVELAERIFQRMAV+NLVTWNSMIAGYVENCRAEDGLK+FK MIESR RPNP
Sbjct: 241 KFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNP 295

BLAST of Cp4.1LG08g07210 vs. TAIR 10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 266.2 bits (679), Expect = 3.3e-71
Identity = 137/254 (53.94%), Postives = 178/254 (70.08%), Query Frame = 0

Query: 37  SSSNHSPRRTHLVSPNNMTPKVHAQPTSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRT 96
           SSS+ S     LV  + +T          +  LNK I   VR+GD++ A +VF  M  + 
Sbjct: 35  SSSSCSSPEPSLVRSDYLT---KPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKN 94

Query: 97  TVTWNSILSGYTKVAGKMKEAREVFDKIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMP 156
           T+TWNS+L G +K   +M EA ++FD+IPEPD+ SYNIML+CY+RN   E A +FF+ MP
Sbjct: 95  TITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMP 154

Query: 157 VKDIASWNTLISGFARNGQMKEAFDLFSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKN 216
            KD ASWNT+I+G+AR G+M++A +LF  M EKN VSW+AMISGY+E GDLE A   +K 
Sbjct: 155 FKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKV 214

Query: 217 AFIKSVVVETAMLTGYMKFGKVELAERIFQRMAV-RNLVTWNSMIAGYVENCRAEDGLKL 276
           A ++ VV  TAM+TGYMK  KVELAE +F+ M V +NLVTWN+MI+GYVEN R EDGLKL
Sbjct: 215 APVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKL 274

Query: 277 FKAMIESRARPNPS 290
           F+AM+E   RPN S
Sbjct: 275 FRAMLEEGIRPNSS 285

BLAST of Cp4.1LG08g07210 vs. TAIR 10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-42
Identity = 82/210 (39.05%), Postives = 134/210 (63.81%), Query Frame = 0

Query: 73  ITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFDKI-PEPDSVS 132
           I    + G +  A K+FD +P R  VTW  +++GY K+ G M+EARE+FD++    + V+
Sbjct: 53  IGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKL-GDMREARELFDRVDSRKNVVT 112

Query: 133 YNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPEKNG 192
           +  M++ YLR+  +  A   F  MP +++ SWNT+I G+A++G++ +A +LF  MPE+N 
Sbjct: 113 WTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI 172

Query: 193 VSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRMAVR 252
           VSW++M+   V+ G ++ A  L++    + VV  TAM+ G  K GKV+ A R+F  M  R
Sbjct: 173 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 232

Query: 253 NLVTWNSMIAGYVENCRAEDGLKLFKAMIE 282
           N+++WN+MI GY +N R ++  +LF+ M E
Sbjct: 233 NIISWNAMITGYAQNNRIDEADQLFQVMPE 261

BLAST of Cp4.1LG08g07210 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-42
Identity = 93/267 (34.83%), Postives = 158/267 (59.18%), Query Frame = 0

Query: 17  SLFRRIQNLHVNSNEEWSPISSSNHSPRRTHLVSPNNMT--PKVHAQP-----TSDVVSL 76
           +L RR Q LH  S        ++ H     H +     T   K   +P      SD+   
Sbjct: 8   ALSRRAQQLHYTSLNGLKRRCNNAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEW 67

Query: 77  NKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFDKIPEPDS 136
           N +I++++R G    A +VF +MP  ++V++N ++SGY +  G+ + AR++FD++PE D 
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLR-NGEFELARKLFDEMPERDL 127

Query: 137 VSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPEK 196
           VS+N+M+  Y+RN  +  A   F  MP +D+ SWNT++SG+A+NG + +A  +F  MPEK
Sbjct: 128 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 187

Query: 197 NGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRMA 256
           N VSW+A++S YV+   +E A  L+K+    ++V    +L G++K  K+  A + F  M 
Sbjct: 188 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 247

Query: 257 VRNLVTWNSMIAGYVENCRAEDGLKLF 277
           VR++V+WN++I GY ++ + ++  +LF
Sbjct: 248 VRDVVSWNTIITGYAQSGKIDEARQLF 273

BLAST of Cp4.1LG08g07210 vs. TAIR 10
Match: AT1G56690.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 5.2e-40
Identity = 83/219 (37.90%), Postives = 128/219 (58.45%), Query Frame = 0

Query: 63  TSDVVSLNKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKMKEAREVFD 122
           TS  V+ +  I+   R G +  A K FD +  +   +WNSI+SGY    G  KEAR++FD
Sbjct: 14  TSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS-NGLPKEARQLFD 73

Query: 123 KIPEPDSVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDL 182
           ++ E + VS+N +++ Y++N  +  A   F  MP +++ SW  ++ G+ + G + EA  L
Sbjct: 74  EMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESL 133

Query: 183 FSVMPEKNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAE 242
           F  MPE+N VSW+ M  G ++ G ++ A +LY    +K VV  T M+ G  + G+V+ A 
Sbjct: 134 FWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEAR 193

Query: 243 RIFQRMAVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE 282
            IF  M  RN+VTW +MI GY +N R +   KLF+ M E
Sbjct: 194 LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPE 231

BLAST of Cp4.1LG08g07210 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-39
Identity = 76/213 (35.68%), Postives = 133/213 (62.44%), Query Frame = 0

Query: 70  NKSITNFVRAGDLESAHKVFDKMPVRTTVTWNSILSGYTKVAGKM-KEAREVFDKIPEPD 129
           N  IT+  R G +  A K+FD    ++  +WNS+++GY   A  M ++AR++FD++P+ +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGY--FANLMPRDARKLFDEMPDRN 80

Query: 130 SVSYNIMLACYLRNCGVEAALAFFNTMPVKDIASWNTLISGFARNGQMKEAFDLFSVMPE 189
            +S+N +++ Y++N  ++ A   F+ MP +++ SW  L+ G+  NG++  A  LF  MPE
Sbjct: 81  IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 140

Query: 190 KNGVSWSAMISGYVEYGDLEAAEELYKNAFIKSVVVETAMLTGYMKFGKVELAERIFQRM 249
           KN VSW+ M+ G+++ G ++ A +LY+    K  +  T+M+ G  K G+V+ A  IF  M
Sbjct: 141 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 200

Query: 250 AVRNLVTWNSMIAGYVENCRAEDGLKLFKAMIE 282
           + R+++TW +M+ GY +N R +D  K+F  M E
Sbjct: 201 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPE 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M4P34.7e-7053.94Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop... [more]
O647662.0e-4139.05Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
Q9SY022.0e-4134.83Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
Q9FXB97.3e-3937.90Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidop... [more]
Q56XI13.6e-3835.68Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
XP_023538963.12.04e-20299.66pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 ... [more]
KAG7030155.11.45e-19797.59Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6596879.11.18e-19697.24Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022942378.11.93e-19596.90pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 ... [more]
XP_023005325.11.30e-19294.61pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 ... [more]
Match NameE-valueIdentityDescription
A0A6J1FUN89.34e-19696.90pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 ... [more]
A0A6J1KX446.29e-19394.61pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X1 ... [more]
A0A6J1FRC91.15e-17087.93pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X2 ... [more]
A0A6J1KST87.61e-16885.86pentatricopeptide repeat-containing protein At4g16835, mitochondrial isoform X2 ... [more]
A0A0A0L2432.96e-15880.00DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0172... [more]
Match NameE-valueIdentityDescription
AT4G16835.13.3e-7153.94Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G35030.11.5e-4239.05Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G02750.11.5e-4234.83Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G56690.15.2e-4037.90Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G09410.12.6e-3935.68pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 162..190
e-value: 6.9E-9
score: 35.4
coord: 254..282
e-value: 1.8E-6
score: 27.8
coord: 226..252
e-value: 7.4E-4
score: 19.6
coord: 130..159
e-value: 0.0045
score: 17.1
coord: 74..93
e-value: 0.14
score: 12.5
coord: 98..124
e-value: 0.0069
score: 16.6
coord: 192..215
e-value: 1.1E-4
score: 22.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 130..159
e-value: 5.0E-4
score: 18.1
coord: 192..215
e-value: 1.1E-4
score: 20.1
coord: 254..287
e-value: 1.6E-7
score: 29.0
coord: 226..252
e-value: 0.003
score: 15.6
coord: 162..192
e-value: 1.3E-7
score: 29.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 11.4875
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 252..286
score: 11.476539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 96..131
score: 10.018685
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 142..219
e-value: 2.3E-20
score: 74.7
coord: 220..290
e-value: 1.0E-14
score: 56.3
coord: 54..141
e-value: 3.1E-17
score: 64.5
NoneNo IPR availablePANTHERPTHR24015:SF1972OS06G0228900 PROTEINcoord: 182..287
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 182..287
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 47..188
coord: 130..232
NoneNo IPR availablePANTHERPTHR24015:SF1972OS06G0228900 PROTEINcoord: 130..232
NoneNo IPR availablePANTHERPTHR24015:SF1972OS06G0228900 PROTEINcoord: 47..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g07210.1Cp4.1LG08g07210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding