Cp4.1LG08g06950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g06950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG08: 5271867 .. 5272208 (-)
RNA-Seq ExpressionCp4.1LG08g06950
SyntenyCp4.1LG08g06950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

mRNA sequence

ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

Coding sequence (CDS)

ATGGTCCATTTGGGCTGTTTGAGGAGCTTACTGGGCTGGGCTCGGCCAGGGAGTTTGTGGGCTTCGAGGGCGATGCGGAGGAGGCCTGACGACATCTCCTTGAGGAGAGCGGTGGTGGAAATGTCGAGATGGAGCAGCGAAAGGGGTTGGGCACGTGGGTCCAGCTGGAGGGAGAAGGTGACGTGGCCGTGGCGGTGGCCGAAGAGGGTGCCGGTGAGCTTGCGGCGGAGAGTGAGACCGAGAGTGAGAGAGAGAGAGAGAGAGTTGCGGCGGTGTAAGAGGAATTGGAAGAGAGAGTGGAGGAGGGAAGAGGCTCTATTGGATAGAGAATGGGATTTGTGA

Protein sequence

MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKVTWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEALLDREWDL
Homology
BLAST of Cp4.1LG08g06950 vs. NCBI nr
Match: KAF5740999.1 (hypothetical protein HS088_TW11G01081 [Tripterygium wilfordii])

HSP 1 Score: 48.5 bits (114), Expect = 6.91e-04
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 22  SRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKVTWPWRWPKRVPVSL 74
           SRAMRRRP  ISL R  V  +      G  R SSWR+K+T P+R PK+VPV++
Sbjct: 77  SRAMRRRPCCISLARYDVGTANSRRRNGELRVSSWRQKLTRPFRKPKKVPVTV 129

BLAST of Cp4.1LG08g06950 vs. ExPASy TrEMBL
Match: A0A0A0LFY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822470 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 1.29e-39
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 1   MVHLGCLRSLLGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKV 60
           MV  GC RS +G ARPGSLW  RAMRR P+DISLRRAVVEM RWS+ RG  RGSS REKV
Sbjct: 37  MVQEGCWRSFVGRARPGSLWEWRAMRRTPEDISLRRAVVEMWRWSNVRGSVRGSSCREKV 96

Query: 61  TWPWRWPKRVPVSLRRRVRPRVRERERELRRCKRNWKREWRREEAL 106
           TWPWRWPKRVPVSLRRRV      RER LRR ++  KREWRREE L
Sbjct: 97  TWPWRWPKRVPVSLRRRVM-----RERALRRWRKKRKREWRREEGL 137

BLAST of Cp4.1LG08g06950 vs. ExPASy TrEMBL
Match: A0A7J7D413 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G01081 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.35e-04
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 22  SRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKVTWPWRWPKRVPVSL 74
           SRAMRRRP  ISL R  V  +      G  R SSWR+K+T P+R PK+VPV++
Sbjct: 77  SRAMRRRPCCISLARYDVGTANSRRRNGELRVSSWRQKLTRPFRKPKKVPVTV 129

BLAST of Cp4.1LG08g06950 vs. ExPASy TrEMBL
Match: A0A0A9K4X2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.34e-04
Identity = 26/57 (45.61%), Postives = 32/57 (56.14%), Query Frame = 0

Query: 11  LGWARPGSLWASRAMRRRPDDISLRRAVVEMSRWSSERGWARGSSWREKVTWPWRWP 67
           +G A P +   S AMR RP+ IS   A V  +  SS  G  RGS+W  + TWP RWP
Sbjct: 63  VGSAEPLARSHSSAMRTRPEAISRTSAAVGAASSSSSAGHERGSTWNARCTWPRRWP 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF5740999.16.91e-0452.83hypothetical protein HS088_TW11G01081 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
A0A0A0LFY21.29e-3972.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822470 PE=4 SV=1[more]
A0A7J7D4133.35e-0452.83Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G01081 ... [more]
A0A0A9K4X24.34e-0445.61Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06950.1Cp4.1LG08g06950.1mRNA