Cp4.1LG08g06940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g06940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RNF34
Location	Cp4.1LG08: 5344984 .. 5347904 (-)
RNA-Seq Expression	Cp4.1LG08g06940
Synteny	Cp4.1LG08g06940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCAGTATAGTCTCCCAAACCAATTTCTCGGCTCTACTTAAGCCTATCGCCGGTCGGCATAGCAGTTTATCGGCGACGCCTCCTCAGTTTTCCTCACAGTCGCCGGGAAGAGCTGCCAGCCGCCGCTAGTGGTCGCTGTCCGCCCTTTGCTGTTTGCTCTGTAGCTATCTCTTTCTCGCACAAAACGCAGGTTCATCTGAGACTCTCTCAATTTCTTTTTTTCCCTCTCTCGCTGTTTTTCGATTTCTTCTGAATTCATATGGAGGTCTTCTTTTTCTTTGCAGATAGAAGACGCGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTGTTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTAGGTAACTTTATTGTTGATTTTCTTCGTTTTAGCATATATTGAATGATAGGTATTAGTAAGATTATTTGTTTATTAACTAATTTTTTCCTTGAATCAGAATCCTCACTGCTAGTTTGTAAAAAGAACTCAACGTCCAAGGAACCCTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGGTACATACTTTTAGATTCATTTGTTTACTTTTAGATTCATTTGTTTACGTTGAAGACTATTGGGAGGGAGTTGAAGACTATTGGGAGGGAGTCCACATTGGCTAATTTAGGGAATGATCATGAGTTTATAGGTAAGGAATACATCTCCATTGGTATAAGGCCTTTTGGGGAGGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGGGACTAGTTATTCCTAACCATTCGAAACCTGGACACGAGCTTAGCATTTTTAGTGCATTGACTTTTTGATATGAACCAAGAGACATCATTCATACAATATACTTCAATGAAGATGTGAAGAAGAAAATGTTGTCAAAATTATCAAAAGAGGTTGCAATTCATCTCACATTAATGAAGTTTGATGGTTATAAATTTTGGGTGGGTTACAATTTAGAGTAATTTAGAGTTATTGTATTTTAAGACATTTTATTTACATCTTCATAATATTGTATGAATGATGTCTCTTGGTTCATATCACTTTTAGCAGGCTAAATGCTGCTAAATGCAGACATGGATATGTTATTCTCTGTCAAGAAAAAGGTGTCCTGGAAATTTAGCATCCACCCATTAAATCCTTGTTTCAACAGTCGTCCCTAGTTTGTGTTTAATTTCGTCTAGATTGTAAAGTCTATGAAAGATTAGGTTAGTCAAAGAGTACAATTTTTTACCAAGGATCCTCTTCCCAAAAGATGGTTATGAAATTTATTGTAAAATAAGAAATGTGCTTGTTGCAAGATCTATGGAGGGACATCTGTGCCTGATGGATGGATGGTAATTACTCACTAGTTGGTACCCAATCTTGGTTGTCTCGTAGGCTGGAAATATATTGGTTTTATAGTGCAAAAGTTGTTAACATTGATGAAATGGATTTTGAGTTGCACGTTTAAAAGAATGTAGCAATATAATGTAGTTGGGTGTAACATAGAGTGGTTGGAGAATTACTGACTATGTAACATTGTAGCATTGTTACTAAATATTTCTAACTTATAGCATTATTATGAGATGAAATGTAGAGATTGTTTGTAGCACTGTTTCGAACAATTTAACACCATGCACTTCAGCTGGGAACTTACCTCCCCCTTTTATGTCATTTGAAGTAGGCAAATTACTTCCTGACTACTACATTTAGAACATAGAACATGTCTGCATTATATTTGAATATGTTACAGTGCTTGTTCCTTCTTTGGAGTTGCAAGCGTTGCTCACTTCCTTCACTTGTTGCAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTATTATCGGAAGCTAATAAAAAGCTGCAATTGGATGCAAAGGTTTGCATGTTGACCAATTACCACCTAAATTTGAATCTGAACACAAACAACTTTAGTAGTTCTTGACCTATACATTCTTGTTAATTGTCATAGGATGATGCTGAAAAATATGATATTGAAGCCCTTAATGGCGATGAATCAGAAGTCATTGAATTGGTAAGTCACTCTTCCTTGTAATTACGTGGTTGTGGATGTGGGAGCTTGGTTTTTCATTGTTCATAATGTCATAATTTGATTTAAACAGGATCTGATGTTGGGCATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTCCATTGAATTGTAGTAGGAGTAGTAGTAGTAGTGAATCAGAGTCTGAAGAGAATAGTGATGATAGCATTACAAGTGACAACAATGACGATGATAATGAAAAGAGTGACAATAAGAATACCGACCGTGGGAATAGATTGTCAGTTAAACTGAAAAGATCGAAGTCTAGAAAAACCAATAATAGAAGTGAAAGCAAAGAAAAAGGTAAATCAAAAAAGCGACCGAGGATTCTAGAGCTTTCTTAAGAGCCATCTTTTGATCGCATCGGATTCGTGAATATGGATGTGTCGCTATGTTTGAAAGTATATGAAGTTTCTGATGCTTGCACTGACAAAATCTTCAAGGTTGATTTGCCTGCCTAGTCCTTTAAGCTTTTGGGTAGGAAGCGATTTTGCTCAAGCTATTTCTTTCTTCACCTTTATCTTTAGTTCATGTGCTTTCTTTGGAAGGGAAGGCGCTGTCTTTATGCATTTCTCTTATAGGAACTGGAATATAGTTAAGTTGGAATTATTCTTAGTCAGATTACCAATGTTGGTTTGTATACATGATGTCGAACTTCAATACTTCAGAAATAGCCAAATTAAGATATTTTTTGTTCTATTTGGCCCCTCCTTTTCTTTCTTTCACCCGTTCTTATATGTTGTCATGCTTTCTAAGGAGAAATTCACTGGTTTTGCCAGAGATTATGCTC

mRNA sequence

CAAATCAGTATAGTCTCCCAAACCAATTTCTCGGCTCTACTTAAGCCTATCGCCGGTCGGCATAGCAGTTTATCGGCGACGCCTCCTCAGTTTTCCTCACAGTCGCCGGGAAGAGCTGCCAGCCGCCGCTAGTGGTCGCTGTCCGCCCTTTGCTGTTTGCTCTGTAGCTATCTCTTTCTCGCACAAAACGCAGATAGAAGACGCGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTGTTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAGAACTCAACGTCCAAGGAACCCTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTATTATCGGAAGCTAATAAAAAGCTGCAATTGGATGCAAAGGATGATGCTGAAAAATATGATATTGAAGCCCTTAATGGCGATGAATCAGAAGTCATTGAATTGGATCTGATGTTGGGCATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTCCATTGAATTGTAGTAGGAGTAGTAGTAGTAGTGAATCAGAGTCTGAAGAGAATAGTGATGATAGCATTACAAGTGACAACAATGACGATGATAATGAAAAGAGTGACAATAAGAATACCGACCGTGGGAATAGATTGTCAGTTAAACTGAAAAGATCGAAGTCTAGAAAAACCAATAATAGAAGTGAAAGCAAAGAAAAAGGTAAATCAAAAAAGCGACCGAGGATTCTAGAGCTTTCTTAAGAGCCATCTTTTGATCGCATCGGATTCGTGAATATGGATGTGTCGCTATGTTTGAAAGTATATGAAGTTTCTGATGCTTGCACTGACAAAATCTTCAAGGTTGATTTGCCTGCCTAGTCCTTTAAGCTTTTGGGTAGGAAGCGATTTTGCTCAAGCTATTTCTTTCTTCACCTTTATCTTTAGTTCATGTGCTTTCTTTGGAAGGGAAGGCGCTGTCTTTATGCATTTCTCTTATAGGAACTGGAATATAGTTAAGTTGGAATTATTCTTAGTCAGATTACCAATGTTGGTTTGTATACATGATGTCGAACTTCAATACTTCAGAAATAGCCAAATTAAGATATTTTTTGTTCTATTTGGCCCCTCCTTTTCTTTCTTTCACCCGTTCTTATATGTTGTCATGCTTTCTAAGGAGAAATTCACTGGTTTTGCCAGAGATTATGCTC

Coding sequence (CDS)

ATGCGGCATGCTAGCAAGGATCTTTTGTGTTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAGAACTCAACGTCCAAGGAACCCTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTATTATCGGAAGCTAATAAAAAGCTGCAATTGGATGCAAAGGATGATGCTGAAAAATATGATATTGAAGCCCTTAATGGCGATGAATCAGAAGTCATTGAATTGGATCTGATGTTGGGCATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTCCATTGAATTGTAGTAGGAGTAGTAGTAGTAGTGAATCAGAGTCTGAAGAGAATAGTGATGATAGCATTACAAGTGACAACAATGACGATGATAATGAAAAGAGTGACAATAAGAATACCGACCGTGGGAATAGATTGTCAGTTAAACTGAAAAGATCGAAGTCTAGAAAAACCAATAATAGAAGTGAAAGCAAAGAAAAAGGTAAATCAAAAAAGCGACCGAGGATTCTAGAGCTTTCTTAA

Protein sequence

MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSKSRKTNNRSESKEKGKSKKRPRILELS

Homology

[Close]

BLAST of Cp4.1LG08g06940 vs. NCBI nr
Match: XP_023539679.1 (uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (937), Expect = 1.53e-126
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK
Sbjct: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRKTNNRSESKEKGKSKKRPRILELS
Sbjct: 181 SRKTNNRSESKEKGKSKKRPRILELS 206

[Close]

BLAST of Cp4.1LG08g06940 vs. NCBI nr
Match: XP_023005549.1 (uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima])

HSP 1 Score: 342 bits (878), Expect = 1.50e-117
Identity = 194/206 (94.17%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVLSEANKKLQLDAKDDAEKYDIEALNG+ESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVIPLNCS SSSSSESESEE+SDDSITSDNND+DNEKSD +NTDRGNRLSVKLKRSK
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SR+ N RSES+EKGKS KRP+ILELS
Sbjct: 181 SRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of Cp4.1LG08g06940 vs. NCBI nr
Match: XP_022936657.1 (uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata])

HSP 1 Score: 340 bits (872), Expect = 1.19e-116
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLLCLERKDLPSSS ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVI LNCS SSSS ESESEE+SDDSITSDNNDDDNEKSDN+NTDRGNRLSVKLKR K
Sbjct: 121 GNQPVIALNCS-SSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLK 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRKTN RSESKEKGKS KRP+ILELS
Sbjct: 181 SRKTNCRSESKEKGKSNKRPKILELS 205

[Close]

BLAST of Cp4.1LG08g06940 vs. NCBI nr
Match: KAG6596894.1 (hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325 bits (834), Expect = 6.12e-111
Identity = 186/193 (96.37%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVIPLNCS SSSSSESESEE+SDDSITSDNND+DNEKSDN+N+DRGNRLSVKLKRSK
Sbjct: 121 GNQPVIPLNCS-SSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSK 180

Query: 181 SRKTNNRSESKEK 193
           SR+TN RSESKEK
Sbjct: 181 SRRTNCRSESKEK 192

[Close]

BLAST of Cp4.1LG08g06940 vs. NCBI nr
Match: XP_038903017.1 (uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 uncharacterized protein LOC120089721 [Benincasa hispida])

HSP 1 Score: 286 bits (732), Expect = 2.24e-95
Identity = 173/206 (83.98%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRH SKDLL LERKDL SSSLESSLLVCKKNSTSKEP RNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRH-SKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPRRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+DAKD+AEKYDIEAL+G+ES+VIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDAKDNAEKYDIEALDGNESKVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVIPL CS   SSSESESEE+SDDSITS++N+DDNEKSD++NTD  NR SVKLKRS 
Sbjct: 121 GNQPVIPLTCS---SSSESESEESSDDSITSNDNNDDNEKSDDQNTDHSNRSSVKLKRSN 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRKT+ RS+SK K KS+KRP+ILELS
Sbjct: 181 SRKTSCRSKSKGKSKSEKRPKILELS 202

[Close]

BLAST of Cp4.1LG08g06940 vs. ExPASy TrEMBL
Match: A0A6J1KZJ8 (uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498503 PE=4 SV=1)

HSP 1 Score: 342 bits (878), Expect = 7.24e-118
Identity = 194/206 (94.17%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVLSEANKKLQLDAKDDAEKYDIEALNG+ESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVIPLNCS SSSSSESESEE+SDDSITSDNND+DNEKSD +NTDRGNRLSVKLKRSK
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SR+ N RSES+EKGKS KRP+ILELS
Sbjct: 181 SRRANCRSESREKGKSNKRPKILELS 206

[Close]

BLAST of Cp4.1LG08g06940 vs. ExPASy TrEMBL
Match: A0A6J1F913 (uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443185 PE=4 SV=1)

HSP 1 Score: 340 bits (872), Expect = 5.74e-117
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLLCLERKDLPSSS ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GNQPVI LNCS SSSS ESESEE+SDDSITSDNNDDDNEKSDN+NTDRGNRLSVKLKR K
Sbjct: 121 GNQPVIALNCS-SSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLK 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRKTN RSESKEKGKS KRP+ILELS
Sbjct: 181 SRKTNCRSESKEKGKSNKRPKILELS 205

[Close]

BLAST of Cp4.1LG08g06940 vs. ExPASy TrEMBL
Match: A0A5D3CJH5 (E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00670 PE=4 SV=1)

HSP 1 Score: 283 bits (724), Expect = 1.79e-94
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLL LERKDL +SSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GN PVIPL CS    SSESESEE+SDDSITSD++++DNEKSD++NTD  NRLSVKLKRS 
Sbjct: 121 GNHPVIPLTCS----SSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSN 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRK + RS+SK KGKSKKRP+I  LS
Sbjct: 181 SRKASCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cp4.1LG08g06940 vs. ExPASy TrEMBL
Match: A0A1S3BJW4 (uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=4 SV=1)

HSP 1 Score: 283 bits (724), Expect = 1.79e-94
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRHASKDLL LERKDL +SSLESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GN PVIPL CS    SSESESEE+SDDSITSD++++DNEKSD++NTD  NRLSVKLKRS 
Sbjct: 121 GNHPVIPLTCS----SSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSN 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRK + RS+SK KGKSKKRP+I  LS
Sbjct: 181 SRKASCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cp4.1LG08g06940 vs. ExPASy TrEMBL
Match: A0A0A0L448 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 2.08e-93
Identity = 167/206 (81.07%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60
           MRH SKDLL LERKDL SSSLESSLLVCKKNSTSK+P RNEKPITEPA KS VLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120
           LGV+SEANKKLQ+D+K++AEKYDIEAL+G+ESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNQPVIPLNCSRSSSSSESESEENSDDSITSDNNDDDNEKSDNKNTDRGNRLSVKLKRSK 180
           GN PVIPL CS    SSESESEE+SDDSITSD+++DDNEKSD++ TD  NRLSVKLKRS 
Sbjct: 121 GNHPVIPLTCS----SSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTNNRSESKEKGKSKKRPRILELS 206
           SRKT+ RS+SK KGKSKKRP+I  LS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cp4.1LG08g06940 vs. TAIR 10
Match: AT1G71430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 75/147 (51.02%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 6   KDLLCLERKDLPSSS-LESSLLVC---KKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFL 65
           KDLL LE K+  SSS ++S+LL+C    K     E     KP   P PKSQ+LG++K FL
Sbjct: 8   KDLLKLELKNPSSSSAMDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLKGFL 67

Query: 66  GVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIG 125
           GV++EANKK    ++ + E Y+IEAL G+ESE+IE+DLMLG+ADL+TPEAV+AAE+AI G
Sbjct: 68  GVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAAIAG 127

Query: 126 NQPVIPLNCSRSSSSSESESEENSDDS 149
             P      S S   S+SESE     S
Sbjct: 128 IGPAAESGDSSSDDESDSESEGEESKS 150

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06940 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g06940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539679.1	1.53e-126	100.00	uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023005549.1	1.50e-117	94.17	uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]	[more]
XP_022936657.1	1.19e-116	95.15	uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]	[more]
KAG6596894.1	6.12e-111	96.37	hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038903017.1	2.24e-95	83.98	uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 unchara...	[more]

BLAST of Cp4.1LG08g06940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZJ8	7.24e-118	94.17	uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F913	5.74e-117	95.15	uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5D3CJH5	1.79e-94	81.07	E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BJW4	1.79e-94	81.07	uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=...	[more]
A0A0A0L448	2.08e-93	81.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g06940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71430.1	3.5e-24	51.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	NOP protein chaperone 1	PFAM	PF15370	DUF4598	coord: 54..179 e-value: 4.3E-14 score: 52.9
IPR027921	NOP protein chaperone 1	PANTHER	PTHR28674	SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED	coord: 2..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06940.1	Cp4.1LG08g06940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000492	box C/D snoRNP assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0062064	box C/D snoRNP complex binding