Cp4.1LG08g06900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g06900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ABC transporter I family member 1
Location	Cp4.1LG08: 5343244 .. 5344954 (+)
RNA-Seq Expression	Cp4.1LG08g06900
Synteny	Cp4.1LG08g06900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCAGGAAGCCACCACTTCCTCGCCTTCTGCTCAACCAGGTCTCTTGCATGCGGAATGCCCAACAAATCCTTAGAAATGTTAACGTCTCGATCCATGATGGCAGTGCGCTCGTGTTAACCGGGACCAATGGTTCAGGTAAAACAACATTCCTACGAATGTTGGCTGGATTCTCTCGGCCTTCTACAGGTGAGATCCTATGGAATGGCCATGACATTACAGAATCAGGAGTGTTCCATCAATACAAGCTGCAGCTGAACTGGCTCTCACTAAAAGATGCCATTAAAGAGAACTTCACCGTCATCGACAACGTTCAATGGTTCGAGGTGCTTGAGGGGAAGCAAGGCAAGTCATTGCCTTCCCTCCAATTGATGGGGCTTGGAAAATTGGCTAAAGAGAAGGCGAGAATGCTATCGATGGGGCAACGGAAACGACTTCAGCTAGCAAGATTGTTGGCCCTTGACAGACCAATTTGGCTGCTTGATGAGCCTTCAGTTGCATTAGATGATGATGGGGTGAAGCTGCTGGAATACATCATTGCAGAGCATAGAAAGAAAGGTGGAATTGTTATTGTAGCAACACATATTCCAATAAAGATTGAAGATGCCATGATCTTGAGGCTTCCACCGCGGTTCCCACGGAGAATGACATTGGTTGATATGCTTGATCGGGCTGACATATCATAGCTACAAACTCCGAAAGGTGAACTTTTTGCCATTTGGGAAGATCTGAATCTTCGTATTTATACATTTTTATACATTCATTTATAAGTTTATTAGGAAGATTTACACGGAAATCACGATTTTGACCTCAATCATTTCTTATTACTATTCGAGGACAATAAGCCCAACTTTATCATCTATCATGATAACTCGACCTTCCATTAGGTTTTTGTAAGGGTTGAACCATCTTATAACTTCCGATGAGATTTACCCAATTCATGATTATGATCCATTTGACTTTCAAATGTAATTAAGTTGTCAACGTTCCAATGATTTCACTTGGAATTAACTTATTAACACTATTTCACTCTAGGGAAGGTTTATGCCATTTGATGTGATATTCCTCCTAGAAAATTAAAATTTAGCATACAATACTTTTTTCTATTTAGGATTAAATAAAATATTATTTTATTTCTCTTCAAGGAGTAGCCTCTACTTAGGCATATCTATCTATCTTTGAACATATAAGTATTTAGTATGCAATCTCCATTGCATATCCTAACTAGAGTTCGGTAATGACATGTAACTCGTTTATAATGCGAGTATGTCTAATCACAATTCACAATTCACATCAGCATAGACTCATAATATTGACATTCATGTTCATAAGATTATAGTAGCATATAATTCCCAAAACTATATACGTGCAATGCTATATGTTTGACGTAACCTAGGAGTACTAAAACGCCACAATGATGGTCAAAGTCTATAGTTTTTAGATACTAATAATAAATGTGATACATAGGCTCATCAAGTTACATCATTTTAAAACTGTCATTCAATAAGGATTGATTTTTTTAAAAAAAAAACTAAAATTTAAGTATAGTTCTTCCTCTCGTGCAAGACCACCTTTCGCTACATAATTACTGCATCTAATGATCAACAACATCCAAGACCACAACGCTATTATGAGGCCTACAAAGTGCAAGAATCCTATGCACTGAAAATTTGAACGATTTCTGCAGATAAACAATTTTTACAATGA

mRNA sequence

ATGTCTCTCAGGAAGCCACCACTTCCTCGCCTTCTGCTCAACCAGGTCTCTTGCATGCGGAATGCCCAACAAATCCTTAGAAATGTTAACGTCTCGATCCATGATGGCAGTGCGCTCGTGTTAACCGGGACCAATGGTTCAGGTAAAACAACATTCCTACGAATGTTGGCTGGATTCTCTCGGCCTTCTACAGGTGAGATCCTATGGAATGGCCATGACATTACAGAATCAGGAGTGTTCCATCAATACAAGCTGCAGCTGAACTGGCTCTCACTAAAAGATGCCATTAAAGAGAACTTCACCGTCATCGACAACGTTCAATGGTTCGAGGTGCTTGAGGGGAAGCAAGGCAAGTCATTGCCTTCCCTCCAATTGATGGGGCTTGGAAAATTGGCTAAAGAGAAGGCGAGAATGCTATCGATGGGGCAACGGAAACGACTTCAGCTAGCAAGATTGTTGGCCCTTGACAGACCAATTTGGCTGCTTGATGAGCCTTCAGTTGCATTAGATGATGATGGGGTGAAGCTGCTGGAATACATCATTGCAGAGCATAGAAAGAAAGATAAACAATTTTTACAATGA

Coding sequence (CDS)

ATGTCTCTCAGGAAGCCACCACTTCCTCGCCTTCTGCTCAACCAGGTCTCTTGCATGCGGAATGCCCAACAAATCCTTAGAAATGTTAACGTCTCGATCCATGATGGCAGTGCGCTCGTGTTAACCGGGACCAATGGTTCAGGTAAAACAACATTCCTACGAATGTTGGCTGGATTCTCTCGGCCTTCTACAGGTGAGATCCTATGGAATGGCCATGACATTACAGAATCAGGAGTGTTCCATCAATACAAGCTGCAGCTGAACTGGCTCTCACTAAAAGATGCCATTAAAGAGAACTTCACCGTCATCGACAACGTTCAATGGTTCGAGGTGCTTGAGGGGAAGCAAGGCAAGTCATTGCCTTCCCTCCAATTGATGGGGCTTGGAAAATTGGCTAAAGAGAAGGCGAGAATGCTATCGATGGGGCAACGGAAACGACTTCAGCTAGCAAGATTGTTGGCCCTTGACAGACCAATTTGGCTGCTTGATGAGCCTTCAGTTGCATTAGATGATGATGGGGTGAAGCTGCTGGAATACATCATTGCAGAGCATAGAAAGAAAGATAAACAATTTTTACAATGA

Protein sequence

MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSLPSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKKDKQFLQ

Homology

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BLAST of Cp4.1LG08g06900 vs. ExPASy Swiss-Prot
Match: Q9C8T1 (ABC transporter I family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCI1 PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.5e-87
Identity = 156/187 (83.42%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MS+R+P +PRLLL  VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHDIT+SG+F QYKLQLNW+SLKDAIKE FTV+DNVQWFE+LE K GK+ 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+L KEK+RMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GV+LLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKK 188
           IAEHRKK
Sbjct: 181 IAEHRKK 187

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BLAST of Cp4.1LG08g06900 vs. ExPASy Swiss-Prot
Match: Q2VZJ1 (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=ccmA PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 68/175 (38.86%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 16  VSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDIT 75
           ++C+R  + +   +  S+  G ALVL G NGSGK++ LR+LAG  +P+ G + WNG  + 
Sbjct: 11  LACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEALA 70

Query: 76  ESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEG----KQGKSL-PSLQLMGLGK 135
           E    H    + ++L   DA+K   +V +N++++  L      + G+++  +L   GL +
Sbjct: 71  EDPEAH--AARTHYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGLAR 130

Query: 136 LAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHR 186
           LA    +MLS GQ++R  LARLLA   P+WLLDEP+ ALD   +K+LE ++AEHR
Sbjct: 131 LATIPGKMLSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLAEHR 183

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BLAST of Cp4.1LG08g06900 vs. ExPASy Swiss-Prot
Match: Q82WC8 (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298) OX=228410 GN=ccmA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           M+    P+  L    + C+R   ++  N++ S++ G  + + G NGSGKT+ LR+L G S
Sbjct: 1   MTTGPSPIEMLTARNLECIRGEHRLFSNLSFSVNPGELMFVGGPNGSGKTSLLRLLCGLS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEG---KQG 120
            P  GEI WNG DI + GV   Y+  + +L     IK++ T I+N++    L G    + 
Sbjct: 61  LPDDGEIYWNGTDIRKLGV--DYRDVMTYLGHLGGIKDDLTAIENLRISCALAGCEIDED 120

Query: 121 KSLPSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLL 180
           ++  +L  +GL       AR+LS GQR+R+ LARLL     +W+LDEP  ALD   V+L+
Sbjct: 121 QAADALGQIGLAGREMLPARVLSQGQRRRVALARLLVTRTKLWILDEPLTALDVAAVELI 180

Query: 181 EYIIAEHRKK 188
           + I+  +  K
Sbjct: 181 KGILEHNLAK 188

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BLAST of Cp4.1LG08g06900 vs. ExPASy Swiss-Prot
Match: Q2Y9Q1 (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71) OX=323848 GN=ccmA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-24
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 0


Query: 8   LPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEI 67
           +P L    ++C+R  +++   VN  +  G  + + G NGSGKT+ LRML G + P+ GEI
Sbjct: 1   MPTLEGIDLTCIRGDRKLFSGVNFLLESGGLMQVQGPNGSGKTSLLRMLCGLASPAEGEI 60

Query: 68  LWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEG---KQGKSLPSLQ 127
            W+G  I   G    Y   + +L     +K++ T I+N++    L G    + K+  +LQ
Sbjct: 61  RWDGTQIRSLG--GDYFGAMTYLGHLGGVKDDLTAIENLRISSALGGVDLDERKAHDALQ 120

Query: 128 LMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEH 185
            MGLG      A++LS GQR+R+ LARLL     +W+LDEP  ALD   VKL++ +I  H
Sbjct: 121 HMGLGGRELLPAKVLSQGQRRRVTLARLLVCGTVLWILDEPLTALDTSAVKLVQGLIERH 178

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BLAST of Cp4.1LG08g06900 vs. ExPASy Swiss-Prot
Match: Q21CV6 (Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhodopseudomonas palustris (strain BisB18) OX=316056 GN=ccmA PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-22
Identity = 64/176 (36.36%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 10  RLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILW 69
           RL    + C+R  +Q+   ++V    G A+ + G NG+GKT+ LR++AG    + G I  
Sbjct: 2   RLTGRGLRCVRGGRQVFAGLDVDAAAGEAVAVVGANGAGKTSLLRLIAGLLALAGGAIAL 61

Query: 70  NGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDN-VQWFEVLEGKQGKSLPSLQLMGL 129
            G D   +        Q ++L  +DA+K + +V +N + W + L G+   +  SL  +GL
Sbjct: 62  EGGDSELT-----LAEQAHYLGHRDALKPSLSVAENLIFWQQFLGGEPADAQASLAAVGL 121

Query: 130 GKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEH 185
           G +A   A  LS GQR+RL LARL A+ RP+WLLDEP+ ALD +G  +   ++  H
Sbjct: 122 GHIAHLPAAYLSAGQRRRLSLARLTAVRRPLWLLDEPTSALDAEGQAMFARLMTAH 172

[Close]

BLAST of Cp4.1LG08g06900 vs. NCBI nr
Match: XP_022936646.1 (ABC transporter I family member 1 [Cucurbita moschata] >XP_023539678.1 ABC transporter I family member 1 [Cucurbita pepo subsp. pepo] >KAG6596893.1 ABC transporter I family member 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030169.1 ABC transporter I family member 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367 bits (942), Expect = 3.52e-127
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL
Sbjct: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. NCBI nr
Match: XP_023005528.1 (ABC transporter I family member 1 [Cucurbita maxima])

HSP 1 Score: 361 bits (927), Expect = 6.80e-125
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPPLPRLLLNQVSCMRNAQQILRNV+VSIHDGSALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVSVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS GEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGK GKSL
Sbjct: 61  RPSAGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKHGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. NCBI nr
Match: XP_038903637.1 (ABC transporter I family member 1 [Benincasa hispida] >XP_038903638.1 ABC transporter I family member 1 [Benincasa hispida])

HSP 1 Score: 356 bits (914), Expect = 6.51e-123
Identity = 178/187 (95.19%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+PPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS GEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGK G+S+
Sbjct: 61  RPSAGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKHGRSM 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+++LMGLGKLAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PAIELMGLGKLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. NCBI nr
Match: XP_022142995.1 (ABC transporter I family member 1 [Momordica charantia] >XP_022142996.1 ABC transporter I family member 1 [Momordica charantia])

HSP 1 Score: 351 bits (900), Expect = 8.85e-121
Identity = 175/187 (93.58%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+P LPRLLLNQVSCMRNAQQILRNVNVSIHDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPQLPRLLLNQVSCMRNAQQILRNVNVSIHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS GEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTV+DNVQWFEVLEGKQG S+
Sbjct: 61  RPSAGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVLDNVQWFEVLEGKQGGSM 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+++LMGLGKLAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PAIELMGLGKLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           +AEHRKK
Sbjct: 181 VAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. NCBI nr
Match: XP_027065437.1 (ABC transporter I family member 1 [Coffea arabica] >XP_027065438.1 ABC transporter I family member 1 [Coffea arabica] >CDP10207.1 unnamed protein product [Coffea canephora])

HSP 1 Score: 347 bits (890), Expect = 2.95e-119
Identity = 171/187 (91.44%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+PPLPRLLLN VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPPLPRLLLNNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHD+TESGVFHQYKLQLNWLSLKDAIK+ FTV+DNVQWFEVLEGKQG+SL
Sbjct: 61  KPSAGEILWNGHDVTESGVFHQYKLQLNWLSLKDAIKDKFTVLDNVQWFEVLEGKQGRSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. ExPASy TrEMBL
Match: A0A6J1F833 (ABC transporter I family member 1 OS=Cucurbita moschata OX=3662 GN=LOC111443177 PE=4 SV=1)

HSP 1 Score: 367 bits (942), Expect = 1.71e-127
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL
Sbjct: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. ExPASy TrEMBL
Match: A0A6J1L2F3 (ABC transporter I family member 1 OS=Cucurbita maxima OX=3661 GN=LOC111498491 PE=4 SV=1)

HSP 1 Score: 361 bits (927), Expect = 3.29e-125
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLRKPPLPRLLLNQVSCMRNAQQILRNV+VSIHDGSALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVSVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS GEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGK GKSL
Sbjct: 61  RPSAGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKHGKSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. ExPASy TrEMBL
Match: A0A6J1CMH6 (ABC transporter I family member 1 OS=Momordica charantia OX=3673 GN=LOC111012986 PE=4 SV=1)

HSP 1 Score: 351 bits (900), Expect = 4.28e-121
Identity = 175/187 (93.58%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+P LPRLLLNQVSCMRNAQQILRNVNVSIHDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPQLPRLLLNQVSCMRNAQQILRNVNVSIHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           RPS GEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTV+DNVQWFEVLEGKQG S+
Sbjct: 61  RPSAGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVLDNVQWFEVLEGKQGGSM 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+++LMGLGKLAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PAIELMGLGKLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           +AEHRKK
Sbjct: 181 VAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. ExPASy TrEMBL
Match: A0A6P6SH28 (ABC transporter I family member 1 OS=Coffea arabica OX=13443 GN=LOC113691492 PE=4 SV=1)

HSP 1 Score: 347 bits (890), Expect = 1.43e-119
Identity = 171/187 (91.44%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+PPLPRLLLN VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPPLPRLLLNNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHD+TESGVFHQYKLQLNWLSLKDAIK+ FTV+DNVQWFEVLEGKQG+SL
Sbjct: 61  KPSAGEILWNGHDVTESGVFHQYKLQLNWLSLKDAIKDKFTVLDNVQWFEVLEGKQGRSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. ExPASy TrEMBL
Match: A0A068UPK8 (ABC transporter domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030858001 PE=4 SV=1)

HSP 1 Score: 347 bits (890), Expect = 1.43e-119
Identity = 171/187 (91.44%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MSLR+PPLPRLLLN VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGKTTFLRMLAGFS
Sbjct: 1   MSLRRPPLPRLLLNNVSCMRNAQQILRHVNVSVHDGGALVLTGTNGSGKTTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHD+TESGVFHQYKLQLNWLSLKDAIK+ FTV+DNVQWFEVLEGKQG+SL
Sbjct: 61  KPSAGEILWNGHDVTESGVFHQYKLQLNWLSLKDAIKDKFTVLDNVQWFEVLEGKQGRSL 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+LAKEKARMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDDDGVKLLEYI
Sbjct: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKK 187
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. TAIR 10
Match: AT1G63270.1 (non-intrinsic ABC protein 10 )

HSP 1 Score: 322.4 bits (825), Expect = 2.5e-88
Identity = 156/187 (83.42%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MSLRKPPLPRLLLNQVSCMRNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFS 60
           MS+R+P +PRLLL  VSCMRNAQQILR+VNVS+HDG ALVLTGTNGSGK+TFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  RPSTGEILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSL 120
           +PS GEILWNGHDIT+SG+F QYKLQLNW+SLKDAIKE FTV+DNVQWFE+LE K GK+ 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYI 180
           P+L+LMGLG+L KEK+RMLSMGQRKRLQLARLLA+DRPIWLLDEPSVALDD+GV+LLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKK 188
           IAEHRKK
Sbjct: 181 IAEHRKK 187

[Close]

BLAST of Cp4.1LG08g06900 vs. TAIR 10
Match: AT1G67940.1 (non-intrinsic ABC protein 3 )

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 0


Query: 21  NAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVF 80
           +  +IL+ V + I  G  + + G +GSGK+TFLR L     P    +  +G DIT   V 
Sbjct: 40  DGSRILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNVDVI 99

Query: 81  HQYKLQLNWLSLKDAIKENFTVIDNVQWFEVLEGKQGKSLPSLQLMGLGKL----AKEKA 140
              + ++  L     + +  TV DNV++   L G++       +L+ L  L    AK+  
Sbjct: 100 -ALRRRVGMLFQLPVLFQG-TVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTG 159

Query: 141 RMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKK 188
             LS+GQ +R+ LAR LA +  + LLDEP+ ALD    + +E +I + +K+
Sbjct: 160 AELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQ 208

[Close]

BLAST of Cp4.1LG08g06900 vs. TAIR 10
Match: AT3G62150.1 (P-glycoprotein 21 )

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-11
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 20  RNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGV 79
           R  +QI R  ++SI  GS + L G +GSGK+T + ++  F  P +GE+  +G ++ E   
Sbjct: 415 RPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKE--- 474

Query: 80  FHQYKLQLNWL----------------SLKDAI---KENFTVIDNVQWFEVLEGKQGKSL 139
                 QL W+                S+K+ I   KEN TV +  +  E+      K +
Sbjct: 475 -----FQLKWIRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATEL--ANASKFI 534

Query: 140 PSLQLMGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLE 179
             L   GL  +  E    LS GQ++R+ +AR +  D  I LLDE + ALD +  ++++
Sbjct: 535 DKLP-QGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQ 581

[Close]

BLAST of Cp4.1LG08g06900 vs. TAIR 10
Match: AT2G36910.1 (ATP binding cassette subfamily B1 )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = 0


Query: 24  QILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGVFHQY 83
           +IL N  +S+  G  + L G++GSGK+T + ++  F  P++G++L +G D+         
Sbjct: 384 KILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLK-------- 443

Query: 84  KLQLNWLS------------LKDAIKENFTV----IDNVQWFEVLEGKQGKSLPSLQLMG 143
            L+L WL                +IKEN  +     D V+  E        S       G
Sbjct: 444 TLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDG 503

Query: 144 LGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLE 179
                 E+   LS GQ++R+ +AR +  +  I LLDE + ALD +  KL++
Sbjct: 504 FDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 546

[Close]

BLAST of Cp4.1LG08g06900 vs. TAIR 10
Match: AT2G47000.1 (ATP binding cassette subfamily B4 )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 47/180 (26.11%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 20  RNAQQILRNVNVSIHDGSALVLTGTNGSGKTTFLRMLAGFSRPSTGEILWNGHDITESGV 79
           R  +QI R  ++ I  G+ + L G +GSGK+T + ++  F  P  G++L +G ++ E   
Sbjct: 396 RPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKE--- 455

Query: 80  FHQYKLQLNWLSLKDAIKENFTVI------DNVQWFEVLEGKQGKSLPSLQL-------- 139
                 QL W+  K  +     V+      DN+ +     GK+  +   ++         
Sbjct: 456 -----FQLKWIRSKIGLVSQEPVLFTASIKDNIAY-----GKEDATTEEIKAAAELANAS 515

Query: 140 -------MGLGKLAKEKARMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLE 179
                   GL  +  E    LS GQ++R+ +AR +  D  I LLDE + ALD +  ++++
Sbjct: 516 KFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQ 562

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8T1	3.5e-87	83.42	ABC transporter I family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCI1 PE=2 ...	[more]
Q2VZJ1	2.4e-27	38.86	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Magnetospirillum magn...	[more]
Q82WC8	1.1e-24	35.79	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosomonas europaea...	[more]
Q2Y9Q1	3.2e-24	37.22	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosospira multifor...	[more]
Q21CV6	1.4e-22	36.36	Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhodopseudomonas palu...	[more]

BLAST of Cp4.1LG08g06900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936646.1	3.52e-127	100.00	ABC transporter I family member 1 [Cucurbita moschata] >XP_023539678.1 ABC trans...	[more]
XP_023005528.1	6.80e-125	98.40	ABC transporter I family member 1 [Cucurbita maxima]	[more]
XP_038903637.1	6.51e-123	95.19	ABC transporter I family member 1 [Benincasa hispida] >XP_038903638.1 ABC transp...	[more]
XP_022142995.1	8.85e-121	93.58	ABC transporter I family member 1 [Momordica charantia] >XP_022142996.1 ABC tran...	[more]
XP_027065437.1	2.95e-119	91.44	ABC transporter I family member 1 [Coffea arabica] >XP_027065438.1 ABC transport...	[more]

BLAST of Cp4.1LG08g06900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F833	1.71e-127	100.00	ABC transporter I family member 1 OS=Cucurbita moschata OX=3662 GN=LOC111443177 ...	[more]
A0A6J1L2F3	3.29e-125	98.40	ABC transporter I family member 1 OS=Cucurbita maxima OX=3661 GN=LOC111498491 PE...	[more]
A0A6J1CMH6	4.28e-121	93.58	ABC transporter I family member 1 OS=Momordica charantia OX=3673 GN=LOC111012986...	[more]
A0A6P6SH28	1.43e-119	91.44	ABC transporter I family member 1 OS=Coffea arabica OX=13443 GN=LOC113691492 PE=...	[more]
A0A068UPK8	1.43e-119	91.44	ABC transporter domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_...	[more]

BLAST of Cp4.1LG08g06900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63270.1	2.5e-88	83.42	non-intrinsic ABC protein 10	[more]
AT1G67940.1	1.2e-13	32.16	non-intrinsic ABC protein 3	[more]
AT3G62150.1	4.2e-11	30.34	P-glycoprotein 21	[more]
AT2G36910.1	2.1e-10	28.65	ATP binding cassette subfamily B1	[more]
AT2G47000.1	1.3e-09	26.11	ATP binding cassette subfamily B4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 35..188 e-value: 0.0025 score: 27.1
IPR005895	ABC transporter, haem export, CcmA	TIGRFAM	TIGR01189	TIGR01189	coord: 13..187 e-value: 1.1E-48 score: 163.5
IPR005895	ABC transporter, haem export, CcmA	PANTHER	PTHR43499	ABC TRANSPORTER I FAMILY MEMBER 1	coord: 9..187
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..192 e-value: 7.7E-38 score: 132.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..191
IPR003439	ABC transporter-like, ATP-binding domain	PFAM	PF00005	ABC_tran	coord: 26..166 e-value: 4.5E-26 score: 92.0
IPR003439	ABC transporter-like, ATP-binding domain	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 11..192 score: 11.097939

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06900.1	Cp4.1LG08g06900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0055085	transmembrane transport
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0022857	transmembrane transporter activity