Cp4.1LG08g06750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g06750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA-directed RNA polymerase subunit
LocationCp4.1LG08: 129010 .. 131956 (+)
RNA-Seq ExpressionCp4.1LG08g06750
SyntenyCp4.1LG08g06750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTGATTGATAGAGGATCGGTTTGTGCTAGGACTTTGCGGATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGTACGTGTCTTACTTGGAGAATAGGGTATGTGACCAGGCCTGGAGTTGTTTATAACTTCCCTCTTTTTGCCTCTTAATTTCTTATGTGGTGATGCAAGGAGTGTATTCTCTTGATTCTACCATTCAGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGTACACATCTTTTCATCATAGCTCTGTATATTTTTTTCTCCGTGCTCAGTTTTTTTTTTTTTTTTTTTTTTCAATTAATTTATACGTGATGGATTTAGGCAATAGATTTAATCATATAGATGAAGCATTGATTGACATTTACAATTGTACTAGTGTTTTTATATTGTATTATATGGTAATGGTAAGCCAAATTAGTGTGCAGTTATTTACTTCCAATAAATGTAAATTACAAAGGATCTTAGCCACCATATGGAAACAAGTAGATAAATGGAATCCCAATGACTGAAGTTGTAAGAGTTCTAGAGTGATTATAAAAATGACAAGGTCCTAAGTTTCTTACCTAGGAACGAAATCTTTTAAGACTCTTTGGCAAATTTTTCTTATCTTTAAGCCTAACGGATGTTAAAAAATGAAGTCCTTTAAGCCATTAGGCACAATGAACTTCTAAACAAAGAAAATTATGGAGTGTCAATTCTTCTTTCTCTCTACAAAGGACACACCAACTGAGCTAGAGCAACAATGAAAGCTTTGTCTTTCAGATAACATGGTTAGATTGACAGACGACATGAGGACTGTGCACATTTGGGGAACCTTAGACTTCTAAATTATCTTACACAACTTCATTGGGATAATGTCCTGTTTAGGGACAATTGATTAGTAATGATAGTTGACACGCAAAAGCCCTGTAGTAGTGAGGCTTCTTATTTTAGAATTGTAGTTGAGGGAATCATAGATGATATGTAAAGGGCTATCACTCCTCAATTTAGCTGTAGAAAAGCTTTCTTCTAAACCTCAAATTAAAAGGATATCCTTATCCACACGTCTTTGGTTGAAATGCCCTTAGGTAAGGGGTTTGTTGGAAGAGTGGTTATAAATTGGACGGGTTGGGGGGAGGAATCGTTGGAAAATAGTTTGTGGGAGAGATACCTTTTGCATAAGAATATTACACAATACTTTCAGTCCTATCTTCATATTTTCGAATTTCAAACTCCATCTTGAACCTTTTTAAGACCTGACAGAAGCACACCTTCATCCAGCTGAAAAGTAGCACTTTGTTTGACAAGGGGGCTAACTTTTCAGCGGACTTCCAAGGGCCTTTACCCATAGAGCATTAGAGGAACCCAAAATGAACTGACCAGAATAATCTCTCCCATAGTCCCATTTTTTACTTGTAATAGTTTGTGCTAAAGAAATTTGGGTCTCTAGCCCCCAAAAGATTCAATCCCTCCTGTTTAATATTACCAACATTTAACCGTCTATTTGGTAGGCATAGGAGACCATGTTTCATGTAACCATATGTCTACCAAATTTGGCAATCAAACTCTCCTAGAGGAAGTTTTAGACGTAGATCTCAATTGTCGCAGCAACTTCATACCGTAAACGCTGAAAGATAATGCCGGAGAAAATCAATGAAGGCCAGTTGAGCCAACTCAAGACCCTTCCCTTGGGGGTTTCATTCCACTTCATCAACTCAGAAAGATTCATTCTTGCCTTGATAAATTTATTGAAAGTCGAAAAAGTAAATTAAAAAGCTTCTGAATATTTAGGAGGTTGGTGATTTTAAAGATTCTAGACACAATATTATCTGCTACGTTCAATGAGTGGGATGAAACATGAATCTTAACTTCCTTAAGAACCAAAGCTTCAATAATTTCCATCTTCATACCCAAGGAGGGAAATCTGTTCAAACACTCCACCAATAAGATACACCAATAGAATCAAGTCAAGGAAATTTCAGCCCACTTTATTGTAAGCATTCTCCTGATCAAGCTTAAAGATGAGTCCTTTGTTTCCTTCTTTCCTGTAACTCGGCCATTTCATTTGCAAGTGAAACAGGATCATCCATTCATGTATTGTATTTTCGAACGGATGACTTACATCTTAAACCTTTTGACAGATGGTAAGAAAAGTAGGTTTTAGTCTTTAGTAAAACTTGTTAGCATTACATGGTGCTTCCTCTGAATCTTACGTTTGTCCCTGTGGTGAGAAGATGCACCAATCAAGTCTTTAAAACTAGAAATCGACATGTTTTTAGTATTCCACTGCTTGACCCCAGTGAGTTATGCTCATCACGGAGATGGGGGCAGGAAGTCTTTGTAGGGTTTTCGAATATTGTTTATATCTCTGTGTTTTTCTTCTAAATTTGTTTTTGTTTTCTGCCCATTGCTGTAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTGCAGACAGAATTGGCGTGAGGATTAAGTGCCCATGAACAAAAGTATACGTTTGTGAGATCACAAGTTTTTCATTACGGATTTTCTAACCAAATTAGAAGTAATTTCAATTAATAAAATATTATTTTCATGAACGGCCTTGTAGAATAGGATCTATTCTATAGGTTCTACCTTTATGTCCTTGAGTAAAGTTTTATTTTTTATTTTTTACTTTTTAATTTAAAGTTTGAAATGGCATGTAATAATAAAGTTTATTATTACTATTTTATTGATTTATTGCCCTTTTCAAACCTATTTTAATGTACTATATTTAAAGAATGATT

mRNA sequence

TTATTGATTGATAGAGGATCGGTTTGTGCTAGGACTTTGCGGATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGTACGTGTCTTACTTGGAGAATAGGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTGCAGACAGAATTGGCGTGAGGATTAAGTGCCCATGAACAAAAGTATACGTTTGTGAGATCACAAGTTTTTCATTACGGATTTTCTAACCAAATTAGAAGTAATTTCAATTAATAAAATATTATTTTCATGAACGGCCTTGTAGAATAGGATCTATTCTATAGGTTCTACCTTTATGTCCTTGAGTAAAGTTTTATTTTTTATTTTTTACTTTTTAATTTAAAGTTTGAAATGGCATGTAATAATAAAGTTTATTATTACTATTTTATTGATTTATTGCCCTTTTCAAACCTATTTTAATGTACTATATTTAAAGAATGATT

Coding sequence (CDS)

TTATTGATTGATAGAGGATCGGTTTGTGCTAGGACTTTGCGGATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTACCCAATATGGGTAAATCTTCTAGATTCTTTTGCCCGACTTGTCCGTACGTGTCTTACTTGGAGAATAGGGTAAAGATAAAAAGAAAGCAGCATTTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCATTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTTCAACATTTTACAAGTGCATGAACGAAGACTGCAGACAGAATTGGCGTGAGGATTAA

Protein sequence

LLIDRGSVCARTLRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Homology
[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-16
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 17  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDM 76
           FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 77  KNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           +N   T  +CP C   +A F+Q+Q RSADEP +TFYKC N  C   WR+
Sbjct: 64  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.9e-16
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 17  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDM 76
           FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 77  KNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           +N   T   CP C   +A F+Q+Q RSADEP +TFYKC N  C   WR+
Sbjct: 64  ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy Swiss-Prot
Match: O13896 (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc11 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.9e-16
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 60

Query: 75  -MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
             ++  QTE TC N  C   +A F Q+Q+RSADEP STFY+C    C+  WRE+
Sbjct: 61  AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTK--CKFQWREN 109

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++    
Sbjct: 2   LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLG-GG 61

Query: 75  MKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
             N  QT+  CPN   CG   A F Q+Q+RSADEP +TFYKC+N  C   W+E+
Sbjct: 62  WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVN--CGHRWKEN 110

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy Swiss-Prot
Match: Q2M2S7 (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 17  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMK 76
           FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKV-TNRKYPKLKEVDDELGGAAAWE 63

Query: 77  NAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRE 125
           N   T   CP C   +A F+Q+Q R ADEP +TFYKC N  C   WR+
Sbjct: 64  NVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (628), Expect = 9.68e-82
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 11  RTLRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII 70
           RT RMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII
Sbjct: 34  RTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII 93

Query: 71  SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Sbjct: 94  SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 148

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246 bits (628), Expect = 1.18e-81
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 11  RTLRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII 70
           RT RMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII
Sbjct: 40  RTWRMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPII 99

Query: 71  SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Sbjct: 100 SDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 154

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241 bits (615), Expect = 2.72e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 236 bits (601), Expect = 3.72e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 234 bits (596), Expect = 2.15e-77
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.32e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.32e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 1.80e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 1.80e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 1.42e-75
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 125
           MKNAAQTEATCPNC FGKAAFIQ+QLRSADEPA+TFYKCMNEDCR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 111

[Close]
BLAST of Cp4.1LG08g06750 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-34
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           +  AA+TEA CP CG  KA F  +Q+RSADEP S FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWREE 106

[Close]
BLAST of Cp4.1LG08g06750 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-33
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 0 

Query: 15  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 74
           MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 75  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 126
           +  AA+TEA CP CG  KA F  +Q+RSADEP S FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLK--CEFTWREE 106

[Close]
BLAST of Cp4.1LG08g06750 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 42.7 bits (99), Expect = 2.5e-04
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 0 

Query: 78  AAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWR 124
           A+  +  C  CG  K  + Q+Q RSADEP +T+  C+N  C  +W+
Sbjct: 333 ASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CDNHWK 376

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9Y2Y14.7e-1640.37DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K ... [more]
Q9CQZ77.9e-1640.37DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k... [more]
O138967.9e-1638.60DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (stra... [more]
Q043073.9e-1538.60DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai... [more]
Q2M2S76.7e-1539.81DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE... [more]
BLAST of Cp4.1LG08g06750 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597716.19.68e-8299.13DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
KAG7029162.11.18e-8199.13DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
XP_022932603.12.72e-80100.00DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_0229... [more]
XP_004141147.13.72e-7897.30DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ... [more]
XP_038903069.12.15e-7796.40DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida][more]
BLAST of Cp4.1LG08g06750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IB591.32e-80100.00DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ... [more]
A0A6J1EXG31.32e-80100.00DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143911... [more]
A0A1S3CQ501.80e-7897.30DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3... [more]
A0A0A0LCM41.80e-7897.30DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P... [more]
A0A6J1DGL31.42e-7592.79DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202... [more]
BLAST of Cp4.1LG08g06750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07950.12.3e-3458.56DNA-directed RNA polymerase, subunit M, archaeal [more]
AT1G01210.12.5e-3355.86DNA-directed RNA polymerase, subunit M, archaeal [more]
AT2G38560.12.5e-0439.13transcript elongation factor IIS [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..125
NoneNo IPR availableGENE3D2.20.70.10coord: 14..48
e-value: 6.9E-7
score: 30.8
NoneNo IPR availableGENE3D2.20.25.10coord: 70..125
e-value: 7.0E-18
score: 65.8
NoneNo IPR availablePIRSRPIRSR000071-1PIRSR000071-1coord: 38..45
e-value: 42.0
score: 2.0
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 15..124
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 14..53
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 65..125
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 16..70
e-value: 7.0E-8
score: 42.2
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 83..124
e-value: 3.4E-14
score: 63.2
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 83..123
e-value: 7.1E-16
score: 57.8
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 85..122
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 81..123
score: 13.025854
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 15..125
e-value: 1.5E-26
score: 91.0
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 15..124
IPR029401Nudix hydrolase, N-terminalPFAMPF14803Nudix_N_2coord: 17..48
e-value: 1.6E-7
score: 31.1
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 17..43
IPR034014Pol III subunit C11, C-terminal zinc ribbonCDDcd10509Zn-ribbon_RPC11coord: 77..124
e-value: 2.95999E-22
score: 80.7074

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06750.1Cp4.1LG08g06750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006386 termination of RNA polymerase III transcription
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding