Cp4.1LG08g05880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g05880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	rho GDP-dissociation inhibitor 1-like
Location	Cp4.1LG08: 487601 .. 489134 (-)
RNA-Seq Expression	Cp4.1LG08g05880
Synteny	Cp4.1LG08g05880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCGGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGGTTCTCTATCAAGGAACAACTCGAGAAAGATAAGGTAAGTTCGTAAGATTGAGTTTGATATGACTTTTTAACAATACTTTTGTTGATCCATCATAGCTTTGGTTTTGTTTTTCTAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGTGAACATGAATTTCTTCTTTGTGTTGATGCTATTTAATTTTAAGAACAACCATATCTATTCGAATGGATCTCTGAAGCGGATTCCTTGAATTCTTATAGATATAACCAACATATCTGAACAACATCATTATTGAAATCACTGACCATATATCTAATATTGATCATAATTTATAAGAACATTTTATAGTCAAAGTAAGATTGAGACGGGTTAAAGGTTTACTCGACGTCACGTATCCCGAGAAAGCCTACCCGCTGTTGACTTATGATATGATCAAAGGATGAATGATGTGTTTTGGTGAAGCAGAAAGCAAAGAAGCAGAAGTGAAAATCCAGAGCCTAACAATCCAATGTCCAGGGCGAGCAGATCTTGTGCTGCCATTGCCATTTACCAAAACTTCCAAGAGCAACAGCCTCTTCGCCATCAAGGAAGGCTCCCGATACCGACTCCGATTCAGTTTCGTTGTCGTTGGGAACATCGTCTCCGGTCTCAAGTACACGAACACTGTCTGGAAGACTGGCGTGAGAGGTTTGTTTCCATATAAGTTGAAAAAGTTGAGAACTTTTTACATCTGTTTTTGTTTGATGGGTTGAATTTTGTTTTGACAGTGGATCACACCAAGAAAATGCTGGGAACATTCAGTCCTCAAAAGGATCCATATGTGTATGAAATGGAAGAAGAAGTCACACCGTCTGGAATGTTTGCGAGAGGCTCTTATTCTGCAAGAACAAAGGTAAAAAACCAGACAAAACATTCGTAGATTTTAAAACACAGCAGTAAATCAGCGTAGTTTTCTGAGGACAAAATTGATCAAACTGTTCTTGATTGTTCTTGTTTTGTCCCAGTTTGTGGATGATGATGGGAAGTGCTTCTTGGATGTGAGCTACCACTTTGAAATCCAAAAGAATTGGGCAACACCCTCTTGAGATATTGTTGCAAAGGGAGAAGCTTTGGGTTTGGATAATGCTTCAATTGAAAGGCTCAACTTATTGTGTTACTTTTTGCTGTAATCCAATAGGGATTTGTGTATCACTTTTGTTCATTCAATATATATTTTAGCCGACGAACTTACCTTTCGGTATCTGTGCATACACATTGGTTACTTCAATCAATATCTCAACGTTATTGGTTAATAGCTAAGTAAAGGTGCTACAAATATTTAAATCATAATCAACATGTGCTATT

mRNA sequence

ATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCGGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGGTTCTCTATCAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGGCGAGCAGATCTTGTGCTGCCATTGCCATTTACCAAAACTTCCAAGAGCAACAGCCTCTTCGCCATCAAGGAAGGCTCCCGATACCGACTCCGATTCAGTTTCGTTGTCGTTGGGAACATCGTCTCCGGTCTCAAGTACACGAACACTGTCTGGAAGACTGGCGTGAGAGTGGATCACACCAAGAAAATGCTGGGAACATTCAGTCCTCAAAAGGATCCATATGTGTATGAAATGGAAGAAGAAGTCACACCGTCTGGAATGTTTGCGAGAGGCTCTTATTCTGCAAGAACAAAGTTTGTGGATGATGATGGGAAGTGCTTCTTGGATGTGAGCTACCACTTTGAAATCCAAAAGAATTGGGCAACACCCTCTTGAGATATTGTTGCAAAGGGAGAAGCTTTGGGTTTGGATAATGCTTCAATTGAAAGGCTCAACTTATTGTGTTACTTTTTGCTGTAATCCAATAGGGATTTGTGTATCACTTTTGTTCATTCAATATATATTTTAGCCGACGAACTTACCTTTCGGTATCTGTGCATACACATTGGTTACTTCAATCAATATCTCAACGTTATTGGTTAATAGCTAAGTAAAGGTGCTACAAATATTTAAATCATAATCAACATGTGCTATT

Coding sequence (CDS)

ATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCGGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGGTTCTCTATCAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGGCGAGCAGATCTTGTGCTGCCATTGCCATTTACCAAAACTTCCAAGAGCAACAGCCTCTTCGCCATCAAGGAAGGCTCCCGATACCGACTCCGATTCAGTTTCGTTGTCGTTGGGAACATCGTCTCCGGTCTCAAGTACACGAACACTGTCTGGAAGACTGGCGTGAGAGTGGATCACACCAAGAAAATGCTGGGAACATTCAGTCCTCAAAAGGATCCATATGTGTATGAAATGGAAGAAGAAGTCACACCGTCTGGAATGTTTGCGAGAGGCTCTTATTCTGCAAGAACAAAGTTTGTGGATGATGATGGGAAGTGCTTCTTGGATGTGAGCTACCACTTTGAAATCCAAAAGAATTGGGCAACACCCTCTTGA

Protein sequence

MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS

Homology

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy Swiss-Prot
Match: Q9SFC6 (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-55
Identity = 112/190 (58.95%), Postives = 139/190 (73.16%), Query Frame = 0


Query: 38  EEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG-------- 97
           EE+EDD    + ++ LGP+++IKE LEKDKDDESLRKWKEQLLGSVD++ IG        
Sbjct: 53  EEEEDD----DSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVR 112

Query: 98  ---------GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTV 157
                    GR D+VL +P     K    F +KEGS+Y L+F+F V  NIVSGL+YTNTV
Sbjct: 113 IDSLAIISPGRPDIVLLVPENGNPK-GMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTV 172

Query: 158 WKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDV 211
           WKTGV+VD  K+MLGTFSPQ +PY + M EE TPSGMFARGSYSARTKF+DDD KC+L++
Sbjct: 173 WKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 232

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy Swiss-Prot
Match: P52565 (Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 74/194 (38.14%), Postives = 106/194 (54.64%), Query Frame = 0


Query: 35  EIIEEDEDDKLKPEGEVDLGP--RFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGRA 94
           +I  E+E+D    E  V+  P  + SI+E  E DKDDESLRK+KE LLG V +SA     
Sbjct: 13  QIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVP 72

Query: 95  DLVL------------PLPFTKTSKSNSL----FAIKEGSRYRLRFSFVVVGNIVSGLKY 154
           ++V+            PL    T    S     F +KEG  YR++ SF V   IVSG+KY
Sbjct: 73  NVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKY 132

Query: 155 TNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKC 211
               ++ GV++D T  M+G++ P+ + Y +    E  P GM ARGSYS +++F DDD   
Sbjct: 133 IQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTD 192

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy Swiss-Prot
Match: Q4R4J0 (Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis OX=9541 GN=ARHGDIA PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 74/194 (38.14%), Postives = 106/194 (54.64%), Query Frame = 0


Query: 35  EIIEEDEDDKLKPEGEVDLGP--RFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGRA 94
           +I  E+E+D    E  V+  P  + SI+E  E DKDDESLRK+KE LLG V +SA     
Sbjct: 13  QIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVP 72

Query: 95  DLVL------------PLPFTKTSKSNSL----FAIKEGSRYRLRFSFVVVGNIVSGLKY 154
           ++V+            PL    T    S     F +KEG  YR++ SF V   IVSG+KY
Sbjct: 73  NVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKY 132

Query: 155 TNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKC 211
               ++ GV++D T  M+G++ P+ + Y +    E  P GM ARGSYS +++F DDD   
Sbjct: 133 IQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTD 192

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy Swiss-Prot
Match: P19803 (Rho GDP-dissociation inhibitor 1 OS=Bos taurus OX=9913 GN=ARHGDIA PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-24
Identity = 73/194 (37.63%), Postives = 105/194 (54.12%), Query Frame = 0


Query: 35  EIIEEDEDDKLKPEGEVDLGP--RFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGRA 94
           +I  E+E+D    E  V+  P  + SI+E  E DKDDESLRK+KE LLG V +SA     
Sbjct: 13  QIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVP 72

Query: 95  DLVL------------PLPFTKTSKSNSL----FAIKEGSRYRLRFSFVVVGNIVSGLKY 154
           ++V+            PL    T    S     F +KEG  YR++ SF V   IVSG+KY
Sbjct: 73  NVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKY 132

Query: 155 TNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKC 211
               ++ GV++D T  M+G++ P+ + Y +    E  P GM ARGSY+ +++F DDD   
Sbjct: 133 IQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTD 192

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy Swiss-Prot
Match: Q99PT1 (Rho GDP-dissociation inhibitor 1 OS=Mus musculus OX=10090 GN=Arhgdia PE=1 SV=3)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-24
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 0


Query: 35  EIIEEDEDDKLKPEGEVDLGP--RFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA----- 94
           +I  E+E+D    E  V+  P  + SI+E  E DKDDESLRK+KE LLG V +SA     
Sbjct: 13  QIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVP 72

Query: 95  --IGGRADLVL-----PLPFTKTSKSNSL----FAIKEGSRYRLRFSFVVVGNIVSGLKY 154
             I  R  LV      PL    T    S     F +KEG  YR++ SF V   IVSG+KY
Sbjct: 73  NVIVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKY 132

Query: 155 TNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKC 211
               ++ GV++D T  M+G++ P+ + Y +    E  P GM ARGSY+ +++F DDD   
Sbjct: 133 IQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTD 192

[Close]

BLAST of Cp4.1LG08g05880 vs. NCBI nr
Match: XP_023538815.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415 bits (1067), Expect = 7.88e-146
Identity = 214/231 (92.64%), Postives = 214/231 (92.64%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
           MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60

Query: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTKT 120
           EQLEKDKDDESLRKWKEQLLGSVDLSAIG                 GRADLVLPLPFTKT
Sbjct: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCPGRADLVLPLPFTKT 120

Query: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180
           SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP
Sbjct: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180

Query: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 231

[Close]

BLAST of Cp4.1LG08g05880 vs. NCBI nr
Match: XP_022932679.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 411 bits (1057), Expect = 2.63e-144
Identity = 211/231 (91.34%), Postives = 213/231 (92.21%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
           MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIE+DEDDKLKPEGEVDLGPRFSIK
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEDDEDDKLKPEGEVDLGPRFSIK 60

Query: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTKT 120
           EQLEKDKDDESLRKWKEQLLGSVDLSAIG                 GRADLVLPLPFTKT
Sbjct: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCQGRADLVLPLPFTKT 120

Query: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180
           SKSNSLFAIKEGSRYRLRFSF+VVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP
Sbjct: 121 SKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180

Query: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 231

[Close]

BLAST of Cp4.1LG08g05880 vs. NCBI nr
Match: XP_022972014.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 410 bits (1055), Expect = 5.32e-144
Identity = 211/231 (91.34%), Postives = 213/231 (92.21%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
           MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60

Query: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTKT 120
           EQLEKDKDD SLRKWKEQLLGSVDLSAIG                 GRADLVLPLPFTKT
Sbjct: 61  EQLEKDKDDVSLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCPGRADLVLPLPFTKT 120

Query: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180
           SKSNSLFAIKEGSRYRLRFSF+VVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQK+P
Sbjct: 121 SKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKEP 180

Query: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 231

[Close]

BLAST of Cp4.1LG08g05880 vs. NCBI nr
Match: KAG6597654.1 (Rho GDP-dissociation inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 408 bits (1049), Expect = 3.04e-141
Identity = 210/231 (90.91%), Postives = 212/231 (91.77%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
           +S VVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK
Sbjct: 121 VSTVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 180

Query: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTKT 120
           EQLEKDKDDESLRKWKEQLLGSVDLSAIG                 GRADLVLPLPFTKT
Sbjct: 181 EQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCPGRADLVLPLPFTKT 240

Query: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180
           SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQK+P
Sbjct: 241 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKEP 300

Query: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 301 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 351

[Close]

BLAST of Cp4.1LG08g05880 vs. NCBI nr
Match: XP_023538816.1 (rho GDP-dissociation inhibitor 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (937), Expect = 1.96e-126
Identity = 187/204 (91.67%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 28  MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA 87
           MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA
Sbjct: 1   MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA 60

Query: 88  IG-----------------GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNI 147
           IG                 GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNI
Sbjct: 61  IGESKEAEVKIQSLTIQCPGRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNI 120

Query: 148 VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV 207
           VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV
Sbjct: 121 VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV 180

Query: 208 DDDGKCFLDVSYHFEIQKNWATPS 214
           DDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 DDDGKCFLDVSYHFEIQKNWATPS 204

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy TrEMBL
Match: A0A6J1EXP3 (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439153 PE=3 SV=1)

HSP 1 Score: 411 bits (1057), Expect = 1.28e-144
Identity = 211/231 (91.34%), Postives = 213/231 (92.21%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
           MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIE+DEDDKLKPEGEVDLGPRFSIK
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEDDEDDKLKPEGEVDLGPRFSIK 60

Query: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTKT 120
           EQLEKDKDDESLRKWKEQLLGSVDLSAIG                 GRADLVLPLPFTKT
Sbjct: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCQGRADLVLPLPFTKT 120

Query: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180
           SKSNSLFAIKEGSRYRLRFSF+VVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP
Sbjct: 121 SKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180

Query: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 231

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy TrEMBL
Match: A0A6J1IA85 (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470676 PE=3 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 2.57e-144
Identity = 211/231 (91.34%), Postives = 213/231 (92.21%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
           MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK
Sbjct: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60

Query: 61  EQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTKT 120
           EQLEKDKDD SLRKWKEQLLGSVDLSAIG                 GRADLVLPLPFTKT
Sbjct: 61  EQLEKDKDDVSLRKWKEQLLGSVDLSAIGESKEAEVKIQSLTIQCPGRADLVLPLPFTKT 120

Query: 121 SKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDP 180
           SKSNSLFAIKEGSRYRLRFSF+VVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQK+P
Sbjct: 121 SKSNSLFAIKEGSRYRLRFSFIVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKEP 180

Query: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 YVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 231

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy TrEMBL
Match: A0A6J1F2U0 (rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439153 PE=3 SV=1)

HSP 1 Score: 363 bits (933), Expect = 3.87e-126
Identity = 185/204 (90.69%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 28  MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA 87
           MNDREGEEIIE+DEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA
Sbjct: 1   MNDREGEEIIEDDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA 60

Query: 88  IG-----------------GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNI 147
           IG                 GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSF+VVGNI
Sbjct: 61  IGESKEAEVKIQSLTIQCQGRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFIVVGNI 120

Query: 148 VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV 207
           VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV
Sbjct: 121 VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV 180

Query: 208 DDDGKCFLDVSYHFEIQKNWATPS 214
           DDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 DDDGKCFLDVSYHFEIQKNWATPS 204

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy TrEMBL
Match: A0A6J1I7C4 (rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470676 PE=3 SV=1)

HSP 1 Score: 360 bits (925), Expect = 6.40e-125
Identity = 184/204 (90.20%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 28  MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSA 87
           MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDD SLRKWKEQLLGSVDLSA
Sbjct: 1   MNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDVSLRKWKEQLLGSVDLSA 60

Query: 88  IG-----------------GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNI 147
           IG                 GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSF+VVGNI
Sbjct: 61  IGESKEAEVKIQSLTIQCPGRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFIVVGNI 120

Query: 148 VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFV 207
           VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQK+PYVYEMEEEVTPSGMFARGSYSARTKFV
Sbjct: 121 VSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKEPYVYEMEEEVTPSGMFARGSYSARTKFV 180

Query: 208 DDDGKCFLDVSYHFEIQKNWATPS 214
           DDDGKCFLDVSYHFEIQKNWATPS
Sbjct: 181 DDDGKCFLDVSYHFEIQKNWATPS 204

[Close]

BLAST of Cp4.1LG08g05880 vs. ExPASy TrEMBL
Match: A0A6J1CUH4 (rho GDP-dissociation inhibitor 1-like OS=Momordica charantia OX=3673 GN=LOC111014694 PE=3 SV=1)

HSP 1 Score: 357 bits (916), Expect = 3.91e-123
Identity = 185/232 (79.74%), Postives = 201/232 (86.64%), Query Frame = 0


Query: 1   MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEE-IIEEDEDDKLKPEGEVDLGPRFSI 60
           MSA+VGSLSTK+VKFNP+  +EE+ ++MN+REGEE I+EEDEDDKLKPE E+DLGP+FS+
Sbjct: 1   MSAMVGSLSTKDVKFNPR--DEEIDRTMNEREGEEEIVEEDEDDKLKPEREMDLGPQFSL 60

Query: 61  KEQLEKDKDDESLRKWKEQLLGSVDLSAIG-----------------GRADLVLPLPFTK 120
           KEQLEKDKDDESLRKWKEQLLGSVDLSAIG                 GR DLVLPLPFTK
Sbjct: 61  KEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKVLRLTIKCAGRPDLVLPLPFTK 120

Query: 121 TSKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKD 180
           TSKS+SLFA+KEGSRYRLRFSF V  NIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQK+
Sbjct: 121 TSKSSSLFALKEGSRYRLRFSFTVTENIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKE 180

Query: 181 PYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDVSYHFEIQKNWATPS 214
           PYV EMEEE TPSGM ARGSYSARTKFVDDDGKC+LDVSYHFEIQK W TPS
Sbjct: 181 PYVIEMEEETTPSGMLARGSYSARTKFVDDDGKCYLDVSYHFEIQKKWPTPS 230

[Close]

BLAST of Cp4.1LG08g05880 vs. TAIR 10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 217.6 bits (553), Expect = 9.6e-57
Identity = 112/190 (58.95%), Postives = 139/190 (73.16%), Query Frame = 0


Query: 38  EEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG-------- 97
           EE+EDD    + ++ LGP+++IKE LEKDKDDESLRKWKEQLLGSVD++ IG        
Sbjct: 53  EEEEDD----DSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVR 112

Query: 98  ---------GRADLVLPLPFTKTSKSNSLFAIKEGSRYRLRFSFVVVGNIVSGLKYTNTV 157
                    GR D+VL +P     K    F +KEGS+Y L+F+F V  NIVSGL+YTNTV
Sbjct: 113 IDSLAIISPGRPDIVLLVPENGNPK-GMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTV 172

Query: 158 WKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSARTKFVDDDGKCFLDV 211
           WKTGV+VD  K+MLGTFSPQ +PY + M EE TPSGMFARGSYSARTKF+DDD KC+L++
Sbjct: 173 WKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 232

[Close]

BLAST of Cp4.1LG08g05880 vs. TAIR 10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-53
Identity = 111/204 (54.41%), Postives = 139/204 (68.14%), Query Frame = 0


Query: 25  GKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVD 84
           G S++  E +   EEDED KL      +LGP  ++KEQLE+DKDDESLR+WKEQLLG VD
Sbjct: 28  GSSLSPTEDD---EEDEDKKL------ELGPMIALKEQLERDKDDESLRRWKEQLLGVVD 87

Query: 85  LSAIG-----------------GRADLVLPLPFT-KTSKSNSLFAIKEGSRYRLRFSFVV 144
           L  +G                  R ++VL +P     +     F IKEGS+Y L F+F V
Sbjct: 88  LEDVGETPDPVVKILDLTIRSPDREEMVLTIPEDGLPNPKGPWFTIKEGSKYTLVFNFRV 147

Query: 145 VGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGSYSAR 204
             NIVSGL+Y NTVWKTGV+VD TK MLGTFSPQ + Y + M EE+TPSGMFARGSYSAR
Sbjct: 148 TNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSPQAESYQHVMPEEMTPSGMFARGSYSAR 207

Query: 205 TKFVDDDGKCFLDVSYHFEIQKNW 211
           TKF+DDD KC+L+++Y F+I+K+W
Sbjct: 208 TKFIDDDNKCYLEINYTFDIRKSW 222

[Close]

BLAST of Cp4.1LG08g05880 vs. TAIR 10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-50
Identity = 101/208 (48.56%), Postives = 139/208 (66.83%), Query Frame = 0


Query: 21  EEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLL 80
           EE  G+ ++ +     +   +DD+ + + +++LGP  ++KEQLEKDKDDESLR+WKEQLL
Sbjct: 15  EEPKGQGLSRKNSHSSMCPTDDDEEEEDKKLELGPMIALKEQLEKDKDDESLRRWKEQLL 74

Query: 81  GSVDLSAIG-----------------GRADLVLPLPFT-KTSKSNSLFAIKEGSRYRLRF 140
           GSVDL  +G                  R D+VL +P   K +     F +KEGS+Y L F
Sbjct: 75  GSVDLEEVGETPDPLVKILTLTIRSPDREDMVLTIPENGKPASKGPWFTLKEGSKYTLIF 134

Query: 141 SFVVVGNIVSGLKYTNTVWKTGVRVDHTKKMLGTFSPQKDPYVYEMEEEVTPSGMFARGS 200
           +F V  NIVSGL+Y+NTVWKTG++V   K+MLGTFSPQ +PY + M EE  PSG+  RGS
Sbjct: 135 TFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLVRGS 194

Query: 201 YSARTKFVDDDGKCFLDVSYHFEIQKNW 211
           YS ++KFVDDD +C+L+ +Y F+I+KNW
Sbjct: 195 YSVKSKFVDDDNQCYLENNYTFDIRKNW 222

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFC6	1.3e-55	58.95	Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV...	[more]
P52565	2.1e-24	38.14	Rho GDP-dissociation inhibitor 1 OS=Homo sapiens OX=9606 GN=ARHGDIA PE=1 SV=3	[more]
Q4R4J0	2.1e-24	38.14	Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis OX=9541 GN=ARHGDIA PE=2 ...	[more]
P19803	6.1e-24	37.63	Rho GDP-dissociation inhibitor 1 OS=Bos taurus OX=9913 GN=ARHGDIA PE=1 SV=3	[more]
Q99PT1	6.1e-24	39.18	Rho GDP-dissociation inhibitor 1 OS=Mus musculus OX=10090 GN=Arhgdia PE=1 SV=3	[more]

BLAST of Cp4.1LG08g05880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538815.1	7.88e-146	92.64	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022932679.1	2.63e-144	91.34	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022972014.1	5.32e-144	91.34	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita maxima]	[more]
KAG6597654.1	3.04e-141	90.91	Rho GDP-dissociation inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023538816.1	1.96e-126	91.67	rho GDP-dissociation inhibitor 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG08g05880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXP3	1.28e-144	91.34	rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IA85	2.57e-144	91.34	rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F2U0	3.87e-126	90.69	rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1I7C4	6.40e-125	90.20	rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CUH4	3.91e-123	79.74	rho GDP-dissociation inhibitor 1-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of Cp4.1LG08g05880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07880.1	9.6e-57	58.95	Immunoglobulin E-set superfamily protein	[more]
AT1G62450.1	3.8e-53	54.41	Immunoglobulin E-set superfamily protein	[more]
AT1G12070.1	1.0e-50	48.56	Immunoglobulin E-set superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000406	Rho protein GDP-dissociation inhibitor	PRINTS	PR00492	RHOGDI	coord: 147..162 score: 32.29 coord: 189..206 score: 33.33 coord: 130..146 score: 50.98
IPR000406	Rho protein GDP-dissociation inhibitor	PFAM	PF02115	Rho_GDI	coord: 38..209 e-value: 7.7E-65 score: 218.3
IPR000406	Rho protein GDP-dissociation inhibitor	PANTHER	PTHR10980	RHO GDP-DISSOCIATION INHIBITOR	coord: 90..212 coord: 14..89
IPR024792	Rho GDP-dissociation inhibitor domain superfamily	GENE3D	2.70.50.30	Coagulation Factor XIII, subunit A, domain 1	coord: 50..212 e-value: 2.0E-54 score: 186.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR10980:SF36	OS01G0913600 PROTEIN	coord: 90..212 coord: 14..89
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 39..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05880.1	Cp4.1LG08g05880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007266	Rho protein signal transduction
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity