Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATCCTCGACATCATTCCCGCACCCAAACGAAGGAAAAACACGACCGATCGAGCAAGTCGACAACAAACGAACGCAATCGAAGGGAAGACAATCCCTCCCCATATAGAGAAAGAGGAAAAAGAAGAAGGGTTGAGCTCAAAAGATAGTAAAGAAGGAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAGAGAGACTCAATAATGATCCTGAATGGATTAAAAGCAATGAGAAAATGGCATTTGAAGATGATGTTCAAAATGGGGAGAGGTCTTCTTCTTCCTCCATCAACTCAGCTTTAGAAATGGATCAATGGCTCAACTTTGATTGGGAGCTTCACAAGATTTCTTCTTGGTTATGGGAAACCGAGATCGATCGATGTATTGAGAGTTAG
mRNA sequence
ATGGGCATCCTCGACATCATTCCCGCACCCAAACGAAGGAAAAACACGACCGATCGAGCAAGTCGACAACAAACGAACGCAATCGAAGGGAAGACAATCCCTCCCCATATAGAGAAAGAGGAAAAAGAAGAAGGGTTGAGCTCAAAAGATAGTAAAGAAGGAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAGAGAGACTCAATAATGATCCTGAATGGATTAAAAGCAATGAGAAAATGGCATTTGAAGATGATGTTCAAAATGGGGAGAGGTCTTCTTCTTCCTCCATCAACTCAGCTTTAGAAATGGATCAATGGCTCAACTTTGATTGGGAGCTTCACAAGATTTCTTCTTGGTTATGGGAAACCGAGATCGATCGATGTATTGAGAGTTAG
Coding sequence (CDS)
ATGGGCATCCTCGACATCATTCCCGCACCCAAACGAAGGAAAAACACGACCGATCGAGCAAGTCGACAACAAACGAACGCAATCGAAGGGAAGACAATCCCTCCCCATATAGAGAAAGAGGAAAAAGAAGAAGGGTTGAGCTCAAAAGATAGTAAAGAAGGAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAGAGAGACTCAATAATGATCCTGAATGGATTAAAAGCAATGAGAAAATGGCATTTGAAGATGATGTTCAAAATGGGGAGAGGTCTTCTTCTTCCTCCATCAACTCAGCTTTAGAAATGGATCAATGGCTCAACTTTGATTGGGAGCTTCACAAGATTTCTTCTTGGTTATGGGAAACCGAGATCGATCGATGTATTGAGAGTTAG
Protein sequence
MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYDWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISSWLWETEIDRCIES
Homology
BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match:
AXF54235.1 (MYB14 [Cucurbita pepo])
HSP 1 Score: 274 bits (700), Expect = 2.47e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY 60
MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY
Sbjct: 98 MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY 157
Query: 61 DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS 120
DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS
Sbjct: 158 DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS 217
Query: 121 SWLWETEIDRCIES 134
SWLWETEIDRCIES
Sbjct: 218 SWLWETEIDRCIES 231
BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match:
XP_023540671.1 (transcription factor MYB111-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 274 bits (700), Expect = 7.44e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY 60
MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY
Sbjct: 131 MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY 190
Query: 61 DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS 120
DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS
Sbjct: 191 DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS 250
Query: 121 SWLWETEIDRCIES 134
SWLWETEIDRCIES
Sbjct: 251 SWLWETEIDRCIES 264
BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match:
XP_022934658.1 (transcription factor MYB111-like [Cucurbita moschata] >KAG6597563.1 Transcription factor MYB111, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029007.1 Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 256 bits (654), Expect = 7.35e-84
Identity = 127/133 (95.49%), Postives = 127/133 (95.49%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYD 61
GILDI PAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK SKEGED GPYD
Sbjct: 132 GILDISPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKHSKEGEDWGPYD 191
Query: 62 WLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS 121
WLDGEIERLNND EW KSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS
Sbjct: 192 WLDGEIERLNNDLEWNKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS 251
Query: 122 WLWETEIDRCIES 134
WLWETE DRCIES
Sbjct: 252 WLWETETDRCIES 264
BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match:
XP_022972182.1 (transcription factor MYB111-like [Cucurbita maxima])
HSP 1 Score: 249 bits (635), Expect = 5.32e-81
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYD 61
GILDI P PKRRKN TDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK SKEGEDLGPYD
Sbjct: 132 GILDISPTPKRRKNMTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKHSKEGEDLGPYD 191
Query: 62 WLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS 121
WLDGEIERLNND EW KSNEKMAFEDD+QNGERSSSSS+NSALEMDQWLNFDWELHKISS
Sbjct: 192 WLDGEIERLNNDFEWNKSNEKMAFEDDLQNGERSSSSSMNSALEMDQWLNFDWELHKISS 251
Query: 122 WLWETEIDRCI 132
WLWE+EIDRCI
Sbjct: 252 WLWESEIDRCI 262
BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match:
KAA0049531.1 (transcription factor MYB12 [Cucumis melo var. makuwa] >TYK16209.1 transcription factor MYB12 [Cucumis melo var. makuwa])
HSP 1 Score: 117 bits (294), Expect = 2.53e-30
Identity = 82/178 (46.07%), Postives = 102/178 (57.30%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKD----------- 61
GILDI PA KR++N R +QQT ++ KT EKE+ E GLSS+D
Sbjct: 14 GILDITPASKRKRNV--RKGQQQTATVKVKTT----EKEKVENGLSSEDDEKEDQDGLGN 73
Query: 62 ----SKEG---EDLGPYDWLDGEIERLNNDP-EW--IKS--------NEKMAFEDDVQNG 121
S +G EDLGPYDWLDGEI RLNN+ EW ++S NEK+ +D N
Sbjct: 74 NQVVSTDGGGEEDLGPYDWLDGEIMRLNNEIIEWGMVESRGNNNNGCNEKVRCNEDNHNN 133
Query: 122 ERSSSSSINSALEMDQWLNFDW----------------ELHKISSWLWETEIDRCIES 134
S SSS+NSALEMD+WLN++W EL +ISSWLWETEID+C +S
Sbjct: 134 YGSCSSSVNSALEMDKWLNWEWDHQDNGSMEGCSLDQWELDEISSWLWETEIDQCFDS 185
BLAST of Cp4.1LG08g05230 vs. ExPASy TrEMBL
Match:
A0A345BTH8 (MYB14 OS=Cucurbita pepo OX=3663 PE=2 SV=1)
HSP 1 Score: 274 bits (700), Expect = 1.20e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY 60
MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY
Sbjct: 98 MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPY 157
Query: 61 DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS 120
DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS
Sbjct: 158 DWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKIS 217
Query: 121 SWLWETEIDRCIES 134
SWLWETEIDRCIES
Sbjct: 218 SWLWETEIDRCIES 231
BLAST of Cp4.1LG08g05230 vs. ExPASy TrEMBL
Match:
A0A6J1F899 (transcription factor MYB111-like OS=Cucurbita moschata OX=3662 GN=LOC111441783 PE=4 SV=1)
HSP 1 Score: 256 bits (654), Expect = 3.56e-84
Identity = 127/133 (95.49%), Postives = 127/133 (95.49%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYD 61
GILDI PAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK SKEGED GPYD
Sbjct: 132 GILDISPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKHSKEGEDWGPYD 191
Query: 62 WLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS 121
WLDGEIERLNND EW KSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS
Sbjct: 192 WLDGEIERLNNDLEWNKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS 251
Query: 122 WLWETEIDRCIES 134
WLWETE DRCIES
Sbjct: 252 WLWETETDRCIES 264
BLAST of Cp4.1LG08g05230 vs. ExPASy TrEMBL
Match:
A0A6J1I444 (transcription factor MYB111-like OS=Cucurbita maxima OX=3661 GN=LOC111470793 PE=4 SV=1)
HSP 1 Score: 249 bits (635), Expect = 2.58e-81
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYD 61
GILDI P PKRRKN TDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK SKEGEDLGPYD
Sbjct: 132 GILDISPTPKRRKNMTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKHSKEGEDLGPYD 191
Query: 62 WLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISS 121
WLDGEIERLNND EW KSNEKMAFEDD+QNGERSSSSS+NSALEMDQWLNFDWELHKISS
Sbjct: 192 WLDGEIERLNNDFEWNKSNEKMAFEDDLQNGERSSSSSMNSALEMDQWLNFDWELHKISS 251
Query: 122 WLWETEIDRCI 132
WLWE+EIDRCI
Sbjct: 252 WLWESEIDRCI 262
BLAST of Cp4.1LG08g05230 vs. ExPASy TrEMBL
Match:
A0A5A7U7J5 (Transcription factor MYB12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001380 PE=4 SV=1)
HSP 1 Score: 117 bits (294), Expect = 1.23e-30
Identity = 82/178 (46.07%), Postives = 102/178 (57.30%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKD----------- 61
GILDI PA KR++N R +QQT ++ KT EKE+ E GLSS+D
Sbjct: 14 GILDITPASKRKRNV--RKGQQQTATVKVKTT----EKEKVENGLSSEDDEKEDQDGLGN 73
Query: 62 ----SKEG---EDLGPYDWLDGEIERLNNDP-EW--IKS--------NEKMAFEDDVQNG 121
S +G EDLGPYDWLDGEI RLNN+ EW ++S NEK+ +D N
Sbjct: 74 NQVVSTDGGGEEDLGPYDWLDGEIMRLNNEIIEWGMVESRGNNNNGCNEKVRCNEDNHNN 133
Query: 122 ERSSSSSINSALEMDQWLNFDW----------------ELHKISSWLWETEIDRCIES 134
S SSS+NSALEMD+WLN++W EL +ISSWLWETEID+C +S
Sbjct: 134 YGSCSSSVNSALEMDKWLNWEWDHQDNGSMEGCSLDQWELDEISSWLWETEIDQCFDS 185
BLAST of Cp4.1LG08g05230 vs. ExPASy TrEMBL
Match:
A0A1S3AX58 (LOW QUALITY PROTEIN: transcription factor MYB12 OS=Cucumis melo OX=3656 GN=LOC103483880 PE=4 SV=1)
HSP 1 Score: 118 bits (295), Expect = 1.42e-29
Identity = 80/178 (44.94%), Postives = 102/178 (57.30%), Query Frame = 0
Query: 2 GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEG------- 61
GILDI PA KR++N R +QQT ++ KT EKE+ E+GLSS+D ++
Sbjct: 132 GILDITPASKRKRNV--RKGQQQTATVKVKTT----EKEKVEKGLSSEDDEKEDQDGLGN 191
Query: 62 -----------EDLGPYDWLDGEIERLNNDP-EW--IKS--------NEKMAFEDDVQNG 121
EDLGPYDWLDGEI RLNN+ EW ++S NEK+ +D N
Sbjct: 192 NQVVLTDGGGEEDLGPYDWLDGEIMRLNNEIIEWGMVESRGNNNNGCNEKVRCNEDNHNN 251
Query: 122 ERSSSSSINSALEMDQWLNFD----------------WELHKISSWLWETEIDRCIES 134
S SSS+NSALEMD+WLN++ WEL +ISSWLWETEID+C +S
Sbjct: 252 YGSCSSSVNSALEMDKWLNWEKDHQDNGSMEGCSLDQWELDEISSWLWETEIDQCFDS 303
BLAST of Cp4.1LG08g05230 vs. TAIR 10
Match:
AT5G49330.1 (myb domain protein 111 )
HSP 1 Score: 42.7 bits (99), Expect = 2.6e-04
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 0
Query: 11 KRRKNTTDRAS----RQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYDWLDGE 70
K++K T R+S +Q A + + P +E + E G + EGE LGPY+WLDGE
Sbjct: 154 KKKKGRTSRSSMKKHKQMVTASQCFSQPKELESDFSEGG--QNGNFEGESLGPYEWLDGE 213
Query: 71 IERLNNDPEWIKSNEKMAF----EDDVQNGERSS 97
+ERL + W ++E+ E ++G+ SS
Sbjct: 214 LERLLSSCVWECTSEEAVIGVNDEKVCESGDNSS 245
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| AXF54235.1 | 2.47e-91 | 100.00 | MYB14 [Cucurbita pepo] | [more] |
| XP_023540671.1 | 7.44e-91 | 100.00 | transcription factor MYB111-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022934658.1 | 7.35e-84 | 95.49 | transcription factor MYB111-like [Cucurbita moschata] >KAG6597563.1 Transcriptio... | [more] |
| XP_022972182.1 | 5.32e-81 | 93.13 | transcription factor MYB111-like [Cucurbita maxima] | [more] |
| KAA0049531.1 | 2.53e-30 | 46.07 | transcription factor MYB12 [Cucumis melo var. makuwa] >TYK16209.1 transcription ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A345BTH8 | 1.20e-91 | 100.00 | MYB14 OS=Cucurbita pepo OX=3663 PE=2 SV=1 | [more] |
| A0A6J1F899 | 3.56e-84 | 95.49 | transcription factor MYB111-like OS=Cucurbita moschata OX=3662 GN=LOC111441783 P... | [more] |
| A0A6J1I444 | 2.58e-81 | 93.13 | transcription factor MYB111-like OS=Cucurbita maxima OX=3661 GN=LOC111470793 PE=... | [more] |
| A0A5A7U7J5 | 1.23e-30 | 46.07 | Transcription factor MYB12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A1S3AX58 | 1.42e-29 | 44.94 | LOW QUALITY PROTEIN: transcription factor MYB12 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G49330.1 | 2.6e-04 | 34.04 | myb domain protein 111 | [more] |
