Cp4.1LG08g05120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG08g05120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG08: 1052047 .. 1052334 (-)
RNA-Seq ExpressionCp4.1LG08g05120
SyntenyCp4.1LG08g05120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCGAGCGACCCGATTCCAGAGGTTTTGATCCCGCCGTCACCACGCCCGCCACCGGAAATCAACCAACAAAGCCAGAGAAGAACCCGAGCTCGAAAGCCGCCGCCGCCACCGCGGCGAGCTCCAATGTGGGGAAGGCTTTGGCTCATAGAGCAGTTTATGGAGCTCAAAAGCGGTGGACAGGAAGAAGAAGAAACCCCGTCCATGGCGTCCGGCTGCTGCCTAGCCGCCTCAGCAAAGTTTCTTTAGCTGATAACTCCTCACCCTCTGATTCTAATTTTTAA

mRNA sequence

ATGAGTTCCGAGCGACCCGATTCCAGAGGTTTTGATCCCGCCGTCACCACGCCCGCCACCGGAAATCAACCAACAAAGCCAGAGAAGAACCCGAGCTCGAAAGCCGCCGCCGCCACCGCGGCGAGCTCCAATGTGGGGAAGGCTTTGGCTCATAGAGCAGTTTATGGAGCTCAAAAGCGGTGGACAGGAAGAAGAAGAAACCCCGTCCATGGCGTCCGGCTGCTGCCTAGCCGCCTCAGCAAAGTTTCTTTAGCTGATAACTCCTCACCCTCTGATTCTAATTTTTAA

Coding sequence (CDS)

ATGAGTTCCGAGCGACCCGATTCCAGAGGTTTTGATCCCGCCGTCACCACGCCCGCCACCGGAAATCAACCAACAAAGCCAGAGAAGAACCCGAGCTCGAAAGCCGCCGCCGCCACCGCGGCGAGCTCCAATGTGGGGAAGGCTTTGGCTCATAGAGCAGTTTATGGAGCTCAAAAGCGGTGGACAGGAAGAAGAAGAAACCCCGTCCATGGCGTCCGGCTGCTGCCTAGCCGCCTCAGCAAAGTTTCTTTAGCTGATAACTCCTCACCCTCTGATTCTAATTTTTAA

Protein sequence

MSSERPDSRGFDPAVTTPATGNQPTKPEKNPSSKAAAATAASSNVGKALAHRAVYGAQKRWTGRRRNPVHGVRLLPSRLSKVSLADNSSPSDSNF
Homology
BLAST of Cp4.1LG08g05120 vs. NCBI nr
Match: KAG6597562.1 (hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (411), Expect = 6.10e-50
Identity = 89/98 (90.82%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MSSERPDSRGFDPAVTTPATG---NQPTKPEKNPSSKAAAATAASSNVGKALAHRAVYGA 60
          MSSERPDSRGFDPA+T PATG   NQPTKPEKNPSSKAAA    SSNVGKALAHRAVYGA
Sbjct: 1  MSSERPDSRGFDPAITMPATGVTGNQPTKPEKNPSSKAAA----SSNVGKALAHRAVYGA 60

Query: 61 QKRWTGRRRNPVHGVRLLPSRLSKVSLADNSSPSDSNF 95
          QKRWTGRRRNPVHGVRLLPSRLSKVSLADNSSPSDSNF
Sbjct: 61 QKRWTGRRRNPVHGVRLLPSRLSKVSLADNSSPSDSNF 94

BLAST of Cp4.1LG08g05120 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_011148 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 7.50e-21
Identity = 64/96 (66.67%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 8   SRGFDPAVTTPATGNQPTKPEKNPSSKA----AAATAASSNVGKALAHRAVYGAQKRWTG 67
           S  FDPA TT      PTK EKNP+SKA    A ATAAS+NVGKALA RAVYG+Q+R TG
Sbjct: 12  SSAFDPAATTGGI-QPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRRTG 71

Query: 68  RRR-NPVH---GVRLLPSRLSKVSLAD---NSSPSD 92
           RRR N +H     RLLPSRLSKVSLAD   NSSPSD
Sbjct: 72  RRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

BLAST of Cp4.1LG08g05120 vs. NCBI nr
Match: KAA0049530.1 (hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK16208.1 hypothetical protein E5676_scaffold209G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 9.80e-18
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 8   SRGFDPAVTTPATGNQPTKPEKNPSSKAA-AATAASSNVGKALAHRAVYGAQKRWTGRRR 67
           S  FDPA TT   G QP   EKNP+SKAA AATAAS+N+GKALA RAVYG Q+R TGRRR
Sbjct: 12  SSAFDPASTTG--GIQPA--EKNPNSKAATAATAASNNMGKALAERAVYGTQQRRTGRRR 71

Query: 68  -NPVH---GVRLLPSRLSKVSLAD---NSSPSD 92
            N +H    +RLLPS LS+VSLAD   NS PSD
Sbjct: 72  RNLIHEHGAIRLLPSTLSRVSLADHHYNSPPSD 100

BLAST of Cp4.1LG08g05120 vs. NCBI nr
Match: KAG2726969.1 (hypothetical protein I3760_01G138000 [Carya illinoinensis])

HSP 1 Score: 62.4 bits (150), Expect = 2.44e-10
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 1  MSSERPDSRGFDPAVTTPATGNQPTKPEKNPSSKAAAATAASSNVGKALAHRAVYGAQKR 60
          M+SE+ ++ G D    T  + NQ T  +K P +K AA    +SN+GKALA RA+YG+  R
Sbjct: 1  MASEKANANGSDLDART--SSNQATTIDKKPDTKGAA----NSNLGKALAQRALYGSHNR 60

Query: 61 WTGRRRNPVHGVRLLPSRLSKVSLADNS 88
            G R+    G RLLPSRLSKVSL ++S
Sbjct: 61 RVGGRKITNSGARLLPSRLSKVSLGEDS 82

BLAST of Cp4.1LG08g05120 vs. NCBI nr
Match: KAG6668024.1 (hypothetical protein CIPAW_01G142300 [Carya illinoinensis])

HSP 1 Score: 60.8 bits (146), Expect = 9.83e-10
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 1  MSSERPDSRGFDPAVTTPATGNQPTKPEKNPSSKAAAATAASSNVGKALAHRAVYGAQKR 60
          M+SE+ ++ G D    T  + NQ T  +K P +K  A    +SN+GKALA RA+YG+  R
Sbjct: 1  MASEKANANGSDLDART--SSNQATTIDKKPDTKGTA----NSNLGKALAQRALYGSHNR 60

Query: 61 WTGRRRNPVHGVRLLPSRLSKVSLADNS 88
            G R+    G RLLPSRLSKVSL ++S
Sbjct: 61 RVGGRKVTNSGARLLPSRLSKVSLGEDS 82

BLAST of Cp4.1LG08g05120 vs. ExPASy TrEMBL
Match: A0A0A0L5C0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.63e-21
Identity = 64/96 (66.67%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 8   SRGFDPAVTTPATGNQPTKPEKNPSSKA----AAATAASSNVGKALAHRAVYGAQKRWTG 67
           S  FDPA TT      PTK EKNP+SKA    A ATAAS+NVGKALA RAVYG+Q+R TG
Sbjct: 12  SSAFDPAATTGGI-QPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRRTG 71

Query: 68  RRR-NPVH---GVRLLPSRLSKVSLAD---NSSPSD 92
           RRR N +H     RLLPSRLSKVSLAD   NSSPSD
Sbjct: 72  RRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

BLAST of Cp4.1LG08g05120 vs. ExPASy TrEMBL
Match: A0A5A7U2I2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001370 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.74e-18
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 8   SRGFDPAVTTPATGNQPTKPEKNPSSKAA-AATAASSNVGKALAHRAVYGAQKRWTGRRR 67
           S  FDPA TT   G QP   EKNP+SKAA AATAAS+N+GKALA RAVYG Q+R TGRRR
Sbjct: 12  SSAFDPASTTG--GIQPA--EKNPNSKAATAATAASNNMGKALAERAVYGTQQRRTGRRR 71

Query: 68  -NPVH---GVRLLPSRLSKVSLAD---NSSPSD 92
            N +H    +RLLPS LS+VSLAD   NS PSD
Sbjct: 72  RNLIHEHGAIRLLPSTLSRVSLADHHYNSPPSD 100

BLAST of Cp4.1LG08g05120 vs. ExPASy TrEMBL
Match: A0A5C7I2V2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010332 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.07e-06
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 44 NVGKALAHRAVYGAQKRWTGRRRNPVHGVRLLPSRLSKVSLAD 86
          N GKALAHRAVYG+  R  G R++  +  R LPSRLSKVSLAD
Sbjct: 36 NFGKALAHRAVYGSGTRRAGSRKDRTNDARTLPSRLSKVSLAD 78

BLAST of Cp4.1LG08g05120 vs. ExPASy TrEMBL
Match: A0A2N9HF98 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38497 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.94e-06
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 28 EKNPSSKAAAATAASSNVGKALAHRAVYGAQKRWTGRRRNPVHGVRLLPSRLSKVSLADN 87
          E++P+SK +  T    + GKALA+RAVYG+  R TG R+   + V+ LPSRLSKVSLA  
Sbjct: 24 EQSPNSKQSTTT----HFGKALAYRAVYGSSSRRTGSRKVTTNDVKSLPSRLSKVSLAKG 80

BLAST of Cp4.1LG08g05120 vs. ExPASy TrEMBL
Match: A0A803Q4Y8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.81e-06
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 14 AVTTPATGNQPTKPEKNPSSKAAAATAASSNVGKALAHRAVYGAQK-RWTGRRRNPVHGV 73
          A T+ +T    +  EK P++K +  T+++SN+ KAL  RA++G++  R  G RRN   GV
Sbjct: 9  ACTSTSTSQVMSMQEKKPNTKGS--TSSNSNMEKALVKRALFGSRHHRHGGGRRNSNSGV 68

Query: 74 RLLPSRLSKVSLAD 86
          R LPSRLSKVSLAD
Sbjct: 69 RSLPSRLSKVSLAD 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6597562.16.10e-5090.82hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57150.17.50e-2166.67hypothetical protein Csa_011148 [Cucumis sativus][more]
KAA0049530.19.80e-1865.59hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK162... [more]
KAG2726969.12.44e-1047.73hypothetical protein I3760_01G138000 [Carya illinoinensis][more]
KAG6668024.19.83e-1046.59hypothetical protein CIPAW_01G142300 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
A0A0A0L5C03.63e-2166.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1[more]
A0A5A7U2I24.74e-1865.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5C7I2V21.07e-0665.12Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010332 PE=4 SV=1[more]
A0A2N9HF981.94e-0652.46Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38497 PE=4 SV=1[more]
A0A803Q4Y82.81e-0648.65Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05120.1Cp4.1LG08g05120.1mRNA