Cp4.1LG08g05080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g05080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pectin lyase-like superfamily protein
Location	Cp4.1LG08: 1105773 .. 1112306 (-)
RNA-Seq Expression	Cp4.1LG08g05080
Synteny	Cp4.1LG08g05080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAGTAATTGTTAAGCATGTTTTGTTACCGTCGTTGTCGTTATCATAGTTGTCGGTCATTGTTGTTTAATGATGTCTTTTTTGGTAGACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTGTAAGGACAAACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATTCTTTCCTCGTTCTTCGTTCTAGAGTTTTAAACTCAATGGCATCCGACACGGACTCGTGAAAGGCCTCACTTCCCTTAACAGTAAAGGGAATCATATGTTCATCACGAATTCTGAAAATATTAGGGTTCGAAAGCTACACCTGATCGCACCGGATGATAGTCCAAACACTGATGGTATACATCTTAGTCGCTCCACTAATGTGAGAATTACAAAATCTACCATTACTACAGGTGACGACTGTATCTCTGTCGGTAGAGGATCGATGAATGTTGTTATCAACCAAATTAAATGCGGGCCAGGACATGGTATCAGGTACGTGTTTTGTGTTCTTGTTTAGCTATGTAATATTGTATACGACGTGATGATCAACAAGGGTTCTACTATGACAGTATTGGTAGCCTCGGGAAGTACCCAAATGAGGAGGACGTGCGGGGTATTATCGTTAGGAACTGCACGTTATTTAACACTGACAACGGGCTTAGAATCAAAACATGGGCAGACTCCCCCCCGAGTGCAGCGGTAGGCATACTATTCCAAGACATCAATTTGATCAATGTAAAGAATCCGATCATCATCGACCAACAGTACAGCTGCTCAAAAGTTTGCAAAAAGCCGGTTCGTTATCGTTTTTGTTTTCGTCTTTCGTTGCTCAATCAAACTTAACCCGCTTCTAACGTGATTTTATCGGGCACGATGCAGCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGGTCTGCAATTTCCAGCCCCCTGCAAGTGATCATAGTCTGAGAGCTGCAGTTGAAGCTTCTTTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTAGCTTAATTTGTAACATGACATGATTCAATTAGCATGTCACCTAGACTTGATGTTTTTGAGTCTAATTCTAAATGCACAAAATTCTTTTTGAAACTAGGGTCTTGTATGTGTCAAACTAACCTAAAATATTTCAATCGAGTTATCTAAGGAATATTGTTGCTTATGCACCGAGACAGATCTTCAAGAGCTCATATCGATGTGAAAGTTTGGTACCTTGATGTCGGCTTTTTGTCACCTAAGACCTTAGTTTACTCTAGGGATAACAGGCTCTTGTTCCCCAAGAGCTCACATCAAGTTTGACACTTCGATGTTGGCTCTTTGCCACTTGGGGTTATAGTATGTTCGCCCGTTAAAGCAGTACTTAAGTTGGATTCATGGGAAAGTTTGTCACCTCGATGTCAGCTTGTTTGCTCATTAAAGTGGTACGTAAGTTGGGTTCAGAATGTTGTGAGACAGTTTGGTCCATATCAGGTACTTTTACCTAGTATGAGAGGTCCATATCAGGTGTGGATGTTAGAGCATTGAGAAGACGTTTACCTAGTATGAGCGAGAGGTCTGGTGTACTAGCGTTTATGTACGAATCTAAATAGTATTTAAACTCTTCTTTAGTAACTCTTTTTTTAATAAATTTCATAATTAAGGAGAATTTACCCTCCTTAAACAATCCGTCACAGCTTAATAAAAGGCTTAAAAACTGAATAAAGAGATGGTAATCCAGAATTAAATTAGATACGACCAGAAACGAACCAGTCCCAAGTAATTAATTAATCGTAATTACTTCAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGTAATTATAAACAATTTCTATCTTCTATTTTATTTTTTAAGAAAAATATTATAACCTTAATATTGAGTAAATTTAGACTAATTTCATTGAAATTTACCTCTGAATATGATTAAATGTGACTTTAGAACTAAATTAGAAAATTACTCATTAATTAACCAATAAATTATACCAAACTAAAGTAATAATAAAGTCAAAATTGAGCATGCAAAATTTTAAATGTAGCCAGAAAGTCAAACAAATTAAAAGAAAAGAGTACTGGTCCTTCAATAAAATGGTCAAACCTAGTTAACAAATATTAAATTTTCAACTAGGTATATATTTTAATTAATAAAAATGAAATTTTAACGTACTAATTTCATCAAAAATATTTTTTAAAAAAAAAAAAATCAAATATTTGTCCATTTAAGAGAAGTAAAAATGACTATTAATATTGAATTGTTTTTTTAAAATAATTTTTTAAAATTATAAAAACTAAATTTTAATTCTCTGTTGCTATAGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACAGTAAGTATGAACAAGTTAAAAATGAATCAGAGGGTAAATTTAAAAAGTTGAAAATTCACCTTTTTTTTGCGGAATTTTCTATCTGAATTTGCTGTGATCATCTGCTTCTCTCCCATCAAAGACACCAAAGCTTTAACCATTTTTACACAGTTCCATGCATTGATGCAAGTTTCCTTTATATGCGCAGTCTTTGAAGCTGAGTGATGTGTCAAATGCGACAGTGAGCAATATTAGCCTTGTGAACAGCAAGGGCTTTCATGTAGCCCTCAATGGGTGTGACAATATTCATCTTTCTGGGTTCAACATTACAGCTCCTTGGAATAGTCAGAACACTGATGGCATTCATATCAGTCAGTCCACCAATATCAACATCACAACCTCCGACATCAGTGTCGGCGACGACTGTGTTTCCATCGGACCTGGTAGCATCAACGTCTCGGTTTCTAACGTTAGATGTGGTCCTGGTCATGGAATCAGGTATCGTATCTACCATCATTCCTAGCATCACAATTCAACATTGCATCTCACTATTAATTGCATGTACATCATTTACACATACAATAGTATTGAAACATTTAGTAAAAGTAGAAGAGCATTAAAATGGTAATAGTTTTGAATGTGTTTGATATGGAATAATGCAGTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGGTAAATACTTATAATAGAATCCCTGCACTTTCAACTTCTTATTATCTCATTATAATTTAGTTCCTTCACTTTAAAAATTGTGATCCTAGTTGTAACCTTATTGACAAAACATTGACATGACATGTTTATAGGATAAACTTTGGTTGATTTGACTCGATGTGGCAAAGTAGAAATAACTCTGGCACAGATGCATGTTTACAGGATAGAAAGAACTCTTTCCCAAACAAAAATTATCTTCTACCTCAAGCTATCATGGTTTTTAGCCAAAAATAATCTACAGTTGAGCTTCGATTTATTCCTTCCCGGAAAAACACTTTTATGTTGCTCAATTTCGACAAATCCACATAATGGTAGATTTAAAAAGCTTATGTGCTAAATTTATTCTTCAACAGAGAAGTATGCTAAATGGTGTTTTTTTTTTTTTTTTTCAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAAGTTCATTACTCGATAAACAACAGTGCTTCCATGCATACTATTTGGTTATAGTTTACAAGCCTCCTGGAGTTTAGAATAAGGTTTAACTTCAGTGCATTTGTAACATTTTTCATTTTCTAGAGGTAGATTTTGATATAGATTTAGTGTTGTGAGAGGCATTGTATGTTGCAACTAGTGAAAAGGAAAGTTCAACTTGAGCATAGCGCAAGTGGTTGAGACATATACATCCTCAATCAAGAGGTCGAAAGTTTGAAGCTTCACTCTACATGTTTTTACCTAAAAAGAAACTAGTGAAGGAGAATGAGAGTGAATTTCAACATTTTTCGTTGGTTTTTTCTTTCCCTCTTCTCTATATGCCTTTATTTTCATTCACAATCATCAGCCATGTCAAATCAAAACATGAGCGTGAAAGTCTACAAAGTGAACATGATCAAAACATAAGCGTGAAAGTCTACAAAGTGAAGAGTAGTTCATATTAGTCCACAAAATTTCTTCTATAGAGGTCTCATTTGGTCTTACAACGAGGAGAAGGTGCATTGCAGCAGGTTCGAGTTGAGGAAGCACTCTCTAGAGAAGGTCTAGAGGAACGAGAAAGGCAGAATGAAGGGACTGCACACTTTTCCTTTTCTCCCAATCTTGTTGGTGGAAAGATGTATTACTTGCTTACCAGAGTCCAAATTTGCATTTTTTGTCAGGCAAAAAAATGGGGGAAGCTTCATTAATCACCTCCAAGAGTCTTCTAATCTAAGCTTCCCCTTTTCTTCTTCATGAAGGTTCCCCCTTTTGCCAAAATATTCTGTGATCTATTCGTTGAGGTTTAAAAAAACCCCGTTGCAGAGCAGCTTTGTTCTCAGAATACTGCATAAAAGTTGGAGGTTGCAATGCTAGAGGGATATCGCCCAGCCGAGAGTCTTGCCAAAATTTTGTTCTTCTTCCATCTCCAACCAAAGTGCTAGTAGGATCTACCAAAATGCTACTTCGGATATACTCCACCAAGGACCTCTCCGGCAATTTCCAATTTTCTGTATAGCGAATCTATCAAACTCATTAGTTTCATATATAACCACTTTGGTCCACAATTCAAGCAGCTCATTTGAATACCTCCATCACCTCTTTGAAATGGGCCTAAAGAAATAAAGGTGATTTGAAAAGGTTTCCGAGACCCAAACGTCCATGATCTAATAATGGCTTAGAAAGGAAGGATAGATAAGAAATAGGCAATTTTCAGCTTTGTACCATCCAGCTGAATAGCAGTTAACTCCACTCTTTTGGCCTCAATATTGATTCCACAATCTGATGATCTTTTCCAATTAATTTTCAAACCAGCTGCAGCTTCAGAAGCTCTAATTATAAAAAACAAGTCCTAAATTGCGAAGTCCTTATCCTAACAAAAAATGAGAAAAAAAGAAATACAA

mRNA sequence

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAAGTTCATTACTCGATAAACAACAGTGCTTCCATGCATACTATTTGGTTATAGTTTACAAGCCTCCTGGAGTTTAGAATAAGGTTTAACTTCAGTGCATTTGTAACATTTTTCATTTTCTAGAGGTAGATTTTGATATAGATTTAGTGTTGTGAGAGGCATTGTATGTTGCAACTAGTGAAAAGGAAAGTTCAACTTGAGCATAGCGCAAGTGGTTGAGACATATACATCCTCAATCAAGAGGTCGAAAGTTTGAAGCTTCACTCTACATGTTTTTACCTAAAAAGAAACTAGTGAAGGAGAATGAGAGTGAATTTCAACATTTTTCGTTGGTTTTTTCTTTCCCTCTTCTCTATATGCCTTTATTTTCATTCACAATCATCAGCCATGTCAAATCAAAACATGAGCGTGAAAGTCTACAAAGTGAACATGATCAAAACATAAGCGTGAAAGTCTACAAAGTGAAGAGTAGTTCATATTAGTCCACAAAATTTCTTCTATAGAGGTCTCATTTGGTCTTACAACGAGGAGAAGGTGCATTGCAGCAGGTTCGAGTTGAGGAAGCACTCTCTAGAGAAGGTCTAGAGGAACGAGAAAGGCAGAATGAAGGGACTGCACACTTTTCCTTTTCTCCCAATCTTGTTGGTGGAAAGATGTATTACTTGCTTACCAGAGTCCAAATTTGCATTTTTTGTCAGGCAAAAAAATGGGGGAAGCTTCATTAATCACCTCCAAGAGTCTTCTAATCTAAGCTTCCCCTTTTCTTCTTCATGAAGGTTCCCCCTTTTGCCAAAATATTCTGTGATCTATTCGTTGAGGTTTAAAAAAACCCCGTTGCAGAGCAGCTTTGTTCTCAGAATACTGCATAAAAGTTGGAGGTTGCAATGCTAGAGGGATATCGCCCAGCCGAGAGTCTTGCCAAAATTTTGTTCTTCTTCCATCTCCAACCAAAGTGCTAGTAGGATCTACCAAAATGCTACTTCGGATATACTCCACCAAGGACCTCTCCGGCAATTTCCAATTTTCTGTATAGCGAATCTATCAAACTCATTAGTTTCATATATAACCACTTTGGTCCACAATTCAAGCAGCTCATTTGAATACCTCCATCACCTCTTTGAAATGGGCCTAAAGAAATAAAGGTGATTTGAAAAGGTTTCCGAGACCCAAACGTCCATGATCTAATAATGGCTTAGAAAGGAAGGATAGATAAGAAATAGGCAATTTTCAGCTTTGTACCATCCAGCTGAATAGCAGTTAACTCCACTCTTTTGGCCTCAATATTGATTCCACAATCTGATGATCTTTTCCAATTAATTTTCAAACCAGCTGCAGCTTCAGAAGCTCTAATTATAAAAAACAAGTCCTAAATTGCGAAGTCCTTATCCTAACAAAAAATGAGAAAAAAAGAAATACAA

Coding sequence (CDS)

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA

Protein sequence

MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSIIHRKEVVFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINLTAIEPPETDDIGRFNCKGSLNNFSILNSTF

Homology

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BLAST of Cp4.1LG08g05080 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.2e-43
Identity = 141/507 (27.81%), Postives = 204/507 (40.24%), Query Frame = 0


Query: 50  VFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEP 109
           VFNV  +GAK  G  D +Q  MK W AAC S+ P+ V+IP G + + ++   GPC+ ++ 
Sbjct: 9   VFNVNDYGAK--GAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSK- 68

Query: 110 IVVQIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQ 169
           I  QID  +K   D S++ S  W+ F +I+GL V+G GTLDGQG   W  N+C  N NC+
Sbjct: 69  IGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCK 128

Query: 170 KLPVPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALP 229
              +       ++ F  +K   +  +    + SK F    +E  ++  ++          
Sbjct: 129 HAAM-------NLRFDFLKHAMVRDIT--SLNSKMFHINVLECEDITFQH---------- 188

Query: 230 FRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRN 289
                                                              + V+  G +
Sbjct: 189 ---------------------------------------------------VTVTAPGTS 248

Query: 290 FSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFMGA 349
            + +                             G+ V        I+ G T  +      
Sbjct: 249 INTD-----------------------------GIHV-------GISKGVTITNTKIA-- 308

Query: 350 WEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFK 409
                   G   + I  GS                                         
Sbjct: 309 -------TGDDCISIGPGS----------------------------------------- 347

Query: 410 SLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTW 469
             +++TIT  V  G   G G     +GSLGRY  EK+V GI V+ CT   T NGVRVKTW
Sbjct: 369 --QNVTIT-QVNCG--PGHGIS---IGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTW 347

Query: 470 PGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTY 529
           P     + AT+LTFQ++ M NV NP+I+DQ+YCP   C  +  S +KLSNIN  NI GT 
Sbjct: 429 PNSPPGA-ATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSRIKLSNINFNNIRGTS 347

Query: 530 NSEFAVNLQCSSAMPCENVQLSYINLT 557
             + AV + CS  MPC N+++  INL+
Sbjct: 489 TGKVAVVIACSHGMPCSNMKIGEINLS 347

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-38
Identity = 137/508 (26.97%), Postives = 199/508 (39.17%), Query Frame = 0


Query: 53  VLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVV 112
           V + G  P    D T   +K + +AC++  P++V+IP G F + + V  GPC++     +
Sbjct: 24  VFTAGGPP--NSDITAAVLKAFTSACQAPAPSQVLIPKGDFKLGETVMTGPCKSPIEFTL 83

Query: 113 QIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLP 172
           Q +    GG   S      W++FEKING  + G GT DG+G+  WK N+CH    C+KLP
Sbjct: 84  QGNVKTDGG---STQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKANNCHKTFECKKLP 143

Query: 173 VPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRS 232
           +  R    D                           N E+ +V                 
Sbjct: 144 ISVRFDFVD---------------------------NAEIKDV----------------- 203

Query: 233 DCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSP 292
                        SLD K                          F+F +   +SG+N + 
Sbjct: 204 ------------TSLDAK-------------------------NFHFNV---ISGKNMT- 263

Query: 293 EPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFMGAWED 352
                                             FD  +   IA  ++ N+         
Sbjct: 264 ----------------------------------FD--NIKIIAPAESPNT--------- 323

Query: 353 ACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFKSLR 412
                                 +  G C G     V IL T IA       V    K+L 
Sbjct: 324 --------------------DGIHLGRCEG-----VKILNTKIATGDDCISVGDGMKNLL 362

Query: 413 HLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGG 472
              +    G GI          VGSLGRY  E+DV  I V+NCT++ T NG+R+KTWP  
Sbjct: 384 IEKVVCGPGHGI---------SVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKTWPSA 362

Query: 473 DHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSE 532
              + A  + F++I++  VSNPI+IDQ+YCP + C+  + S +KL +I  +NI GT  ++
Sbjct: 444 ACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENK 362

Query: 533 FAVNLQCSSAMPCENVQLSYINLTAIEP 561
            AV L CS   PCENV++  IN+    P
Sbjct: 504 DAVKLLCSKGHPCENVEIGDINIEYTGP 362

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-35
Identity = 129/508 (25.39%), Postives = 205/508 (40.35%), Query Frame = 0


Query: 50  VFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRN--T 109
           V+++  FGA   G+ +  + F+ TW+  C S  PA +++P G FL   ++FAGPC++  T
Sbjct: 51  VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVT 110

Query: 110 EPIVVQIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQN 169
             ++  I AT  G      Y + EW LFE+++ L++TG GT  G+G  VWK + C     
Sbjct: 111 VNVIGTIIATTSG------YATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKKVQ 170

Query: 170 CQKLPVPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKA 229
           C   P       + + F N+K                    N+E++ ++           
Sbjct: 171 CNLPP-------TSLKFRNMK--------------------NVEINGIS----------- 230

Query: 230 LPFRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSG 289
                   NAK  +              +FLV+  +   + +KL+A              
Sbjct: 231 ------SVNAKAFH--------------MFLVKTENVNIQNIKLTA-------------- 290

Query: 290 RNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFM 349
                                    AE P  D   G+ + +  +   +            
Sbjct: 291 ------------------------PAESPNTD---GIHLSNADNVSIL------------ 350

Query: 350 GAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIY 409
               D+    G   + +  GS              +++ + +I G               
Sbjct: 351 ----DSTIATGDDCVSVGRGS-------------NNVTVERVICGP-------------- 382

Query: 410 FKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVK 469
                        G G+          VGSLG+Y+ E+DV GI V NCT+ +T NG+R+K
Sbjct: 411 -------------GHGL---------SVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIK 382

Query: 470 TWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISG 529
           TW GG   SKA ++ F+NI+M +V NPIIIDQ Y           S V +S+I  KNI G
Sbjct: 471 TW-GGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSR-----GGDSQVAISDILFKNIRG 382

Query: 530 TYNSEFAVNLQCSSAMPCENVQLSYINL 556
           T  ++  V + CS ++PC+ V +  +NL
Sbjct: 531 TTITKDVVQIMCSKSVPCQGVNVVDVNL 382

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-34
Identity = 100/342 (29.24%), Postives = 149/342 (43.57%), Query Frame = 0


Query: 329 VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 388
           V  +GA ADGKT+ S  F+ AW++ACA    ST++IP+G++ L++V   GPC   +  ++
Sbjct: 32  VAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPI--EI 91

Query: 389 IILGTLIAPTTLTA---DVWIYFKSLRHLTITGNVGSGILDGQGAETW------------ 448
            + GT+ AP   +A     W+ F S+ +  +    G GI DGQG+  +            
Sbjct: 92  NVQGTIQAPADPSAFKDPNWVRFYSVENFKM---FGGGIFDGQGSIAYEKNTCENREFRS 151

Query: 449 ------------------------------------------------------------ 508
                                                                       
Sbjct: 152 KLPVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGK 211

Query: 509 ----------------------------------------FVGSLGRYREEKDVMGIRVE 556
                                                    +GSLG+++ E+ V GI++ 
Sbjct: 212 SEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKIS 271

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-34
Identity = 100/342 (29.24%), Postives = 149/342 (43.57%), Query Frame = 0


Query: 329 VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 388
           V  +GA ADGKT+ S  F+ AW++ACA    ST++IP+G++ L++V   GPC   +  ++
Sbjct: 32  VAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPI--EI 91

Query: 389 IILGTLIAPTTLTA---DVWIYFKSLRHLTITGNVGSGILDGQGAETW------------ 448
            + GT+ AP   +A     W+ F S+ +  +    G GI DGQG+  +            
Sbjct: 92  NVQGTIQAPADPSAFKDPNWVRFYSVENFKM---FGGGIFDGQGSIAYEKNTCENREFRS 151

Query: 449 ------------------------------------------------------------ 508
                                                                       
Sbjct: 152 KLPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGK 211

Query: 509 ----------------------------------------FVGSLGRYREEKDVMGIRVE 556
                                                    +GSLG+++ E+ V GI++ 
Sbjct: 212 SEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKIS 271

[Close]

BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: XP_023539060.1 (exopolygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 595 bits (1533), Expect = 1.96e-207
Identity = 316/430 (73.49%), Postives = 316/430 (73.49%), Query Frame = 0


Query: 269 MKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 328
           MKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD
Sbjct: 1   MKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60

Query: 329 VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 388
           VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV
Sbjct: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120

Query: 389 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWF-------------- 448
           IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETW               
Sbjct: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180

Query: 449 ------------------------------------------------------------ 508
                                                                       
Sbjct: 181 TTSLKLSDVSNATVSNISLVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQST 240

Query: 509 ---------------------------------------VGSLGRYREEKDVMGIRVENC 568
                                                  VGSLGRYREEKDVMGIRVENC
Sbjct: 241 NINITTSDISVGDDCVSIGPGSINVSVSNVRCGPGHGISVGSLGRYREEKDVMGIRVENC 300

Query: 569 TIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGV 585
           TIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGV
Sbjct: 301 TIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGV 360

[Close]

BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: KAG7028995.1 (Exopolygalacturonase-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 587 bits (1512), Expect = 3.01e-204
Identity = 310/430 (72.09%), Postives = 315/430 (73.26%), Query Frame = 0


Query: 269 MKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 328
           MKLS+L++FYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD
Sbjct: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60

Query: 329 VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 388
           VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV
Sbjct: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120

Query: 389 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWF-------------- 448
           IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETW               
Sbjct: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIF 180

Query: 449 ------------------------------------------------------------ 508
                                                                       
Sbjct: 181 TTSLKLSDVSNATVSNISLVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQST 240

Query: 509 ---------------------------------------VGSLGRYREEKDVMGIRVENC 568
                                                  VGSLGRYREEKDV+GIRVENC
Sbjct: 241 NINITASDISVGDDCVSIGPGSINVSVSNVRCGPGHGISVGSLGRYREEKDVIGIRVENC 300

Query: 569 TIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGV 585
           TIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNH CDIKESSGV
Sbjct: 301 TIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHLCDIKESSGV 360

[Close]

BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: KAG6597551.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 452 bits (1164), Expect = 3.15e-154
Identity = 241/317 (76.03%), Postives = 247/317 (77.92%), Query Frame = 0


Query: 269 MKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 328
           MKLS+L++FYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD
Sbjct: 1   MKLSSLVMFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFD 60

Query: 329 VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 388
           VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV
Sbjct: 61  VTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKV 120

Query: 389 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVM 448
           IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETW  G   R+R      
Sbjct: 121 IILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRL----- 180

Query: 449 GIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCD 508
                +C I  T                                                
Sbjct: 181 -----SCGIFTT------------------------------------------------ 240

Query: 509 IKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINLTAIEPPETDDIGR 568
              SSGVKLSNINIKNISGTYNSEFAVNLQCSSA+PCENVQLSYINLTAIEPPETDDIGR
Sbjct: 241 ---SSGVKLSNINIKNISGTYNSEFAVNLQCSSAVPCENVQLSYINLTAIEPPETDDIGR 256

Query: 569 FNCKGSLNNFSILNSTF 585
           FNCKGSLNNFSILNSTF
Sbjct: 301 FNCKGSLNNFSILNSTF 256

[Close]

BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: XP_022941512.1 (exopolygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 435 bits (1119), Expect = 6.25e-146
Identity = 235/352 (66.76%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 347 MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 406
           MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 407 YFKSLRHLTITGNVGSGILDGQGAETWF-------------------------------- 466
           YFKSLRHLTITGNVGSGILDGQGAETW                                 
Sbjct: 61  YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 467 ------------------------------------------------------------ 526
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

Query: 527 ---------------------VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGD 585
                                VGSLGRYREEKDV+GIRVENCTIKDTQNGVRVKTWPGGD
Sbjct: 181 GPGSINVSVSNVRCGPGHGISVGSLGRYREEKDVIGIRVENCTIKDTQNGVRVKTWPGGD 240

[Close]

BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: XP_022972285.1 (exopolygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 432 bits (1112), Expect = 7.14e-145
Identity = 234/352 (66.48%), Postives = 235/352 (66.76%), Query Frame = 0


Query: 347 MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 406
           MGAWEDACAYRGSST LIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTFLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 407 YFKSLRHLTITGNVGSGILDGQGAETWF-------------------------------- 466
           YFKSLR LTITGN+GSGILDGQGAETW                                 
Sbjct: 61  YFKSLRQLTITGNIGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 467 ------------------------------------------------------------ 526
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFKITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

Query: 527 ---------------------VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGD 585
                                VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPG D
Sbjct: 181 GPGSINVSVSNVICGPGHGISVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGED 240

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy TrEMBL
Match: A0A6J1FMM1 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111446788 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 3.03e-146
Identity = 235/352 (66.76%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 347 MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 406
           MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 407 YFKSLRHLTITGNVGSGILDGQGAETWF-------------------------------- 466
           YFKSLRHLTITGNVGSGILDGQGAETW                                 
Sbjct: 61  YFKSLRHLTITGNVGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 467 ------------------------------------------------------------ 526
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFNITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

Query: 527 ---------------------VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGD 585
                                VGSLGRYREEKDV+GIRVENCTIKDTQNGVRVKTWPGGD
Sbjct: 181 GPGSINVSVSNVRCGPGHGISVGSLGRYREEKDVIGIRVENCTIKDTQNGVRVKTWPGGD 240

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy TrEMBL
Match: A0A6J1I855 (exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470865 PE=3 SV=1)

HSP 1 Score: 432 bits (1112), Expect = 3.46e-145
Identity = 234/352 (66.48%), Postives = 235/352 (66.76%), Query Frame = 0


Query: 347 MGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 406
           MGAWEDACAYRGSST LIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI
Sbjct: 1   MGAWEDACAYRGSSTFLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWI 60

Query: 407 YFKSLRHLTITGNVGSGILDGQGAETWF-------------------------------- 466
           YFKSLR LTITGN+GSGILDGQGAETW                                 
Sbjct: 61  YFKSLRQLTITGNIGSGILDGQGAETWLYGFNCRHRLSCGIFTTSLKLSDVSNATVSNIS 120

Query: 467 ------------------------------------------------------------ 526
                                                                       
Sbjct: 121 LVNSKGFHVALNGCDNIHLSGFKITAPWNSQNTDGIHISQSTNINITASDISVGDDCVSI 180

Query: 527 ---------------------VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGD 585
                                VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPG D
Sbjct: 181 GPGSINVSVSNVICGPGHGISVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGED 240

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy TrEMBL
Match: A0A6J1FTU0 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111446770 PE=3 SV=1)

HSP 1 Score: 397 bits (1021), Expect = 2.08e-130
Identity = 232/414 (56.04%), Postives = 236/414 (57.00%), Query Frame = 0


Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSIIHRKEVVFNVLSFGAKP 60
           MNSSSKLP+LLGLFLASFVAA+AKALIGPSTPDPFSSISL+SI HRKE VFNVLSFGAK 
Sbjct: 1   MNSSSKLPVLLGLFLASFVAAKAKALIGPSTPDPFSSISLNSITHRKEAVFNVLSFGAKL 60

Query: 61  GGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLKG 120
           GGTKDNTQ FMKTWVAACRSKQPARVVIPSGVFLI QIVFAGPCRNTEPIVVQIDATLKG
Sbjct: 61  GGTKDNTQNFMKTWVAACRSKQPARVVIPSGVFLINQIVFAGPCRNTEPIVVQIDATLKG 120

Query: 121 GDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPV------- 180
           G DVS+YVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPV       
Sbjct: 121 GVDVSEYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVSFKLNGI 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 RHGLVKGLTSLNSKGNHMFITNSENIRVRKLHLIAPDDSPNTDGIHLSRSTNVRITKSII 240

Query: 241 ------------------------------------------------------------ 242
                                                                       
Sbjct: 241 ATGDDCISVGRGSMNVVITQIKCGPGHGISIGSLGKYPNEEDVRGIIVRNCTLINTDNGL 300

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy TrEMBL
Match: A0A6J1I470 (exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470806 PE=3 SV=1)

HSP 1 Score: 386 bits (991), Expect = 6.80e-126
Identity = 227/414 (54.83%), Postives = 232/414 (56.04%), Query Frame = 0


Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSIIHRKEVVFNVLSFGAKP 60
           MNSSSKLP+LL LFLASFVAAEAK LIGPSTPDPFSSI+LDSI HRKEVVFNVLSFGAK 
Sbjct: 1   MNSSSKLPVLLWLFLASFVAAEAKVLIGPSTPDPFSSINLDSIRHRKEVVFNVLSFGAKF 60

Query: 61  GGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLKG 120
             TKDNTQTFMKTWVAACRSKQ ARVVIPSGVFLI QI FAGPCRNTEPIVVQIDATLKG
Sbjct: 61  SSTKDNTQTFMKTWVAACRSKQAARVVIPSGVFLINQIAFAGPCRNTEPIVVQIDATLKG 120

Query: 121 GDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPV------- 180
           G DVSQYVSAEWILFEKINGLIVTGRGTLDGQGS+VWKYNDCHVN+NCQKLPV       
Sbjct: 121 GVDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSEVWKYNDCHVNENCQKLPVSLKLNGI 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 RHGLVKGLTSLNSKGNHMFITNSENIRVRKLHLIAPDDSPNTDGIHLSRSTKVRITKSTI 240

Query: 241 ------------------------------------------------------------ 242
                                                                       
Sbjct: 241 ATGDDCISVGRGSMNVVIDQIKCGPGHGISIGSLGKYPNEEDVRGIIVRNCTLTNTDNGL 300

[Close]

BLAST of Cp4.1LG08g05080 vs. ExPASy TrEMBL
Match: A5AMR9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012014 PE=3 SV=1)

HSP 1 Score: 389 bits (1000), Expect = 9.11e-122
Identity = 271/829 (32.69%), Postives = 350/829 (42.22%), Query Frame = 0


Query: 48  EVVFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNT 107
           E +FNVL +GAKPGG KD+T+ FMK WVAAC  +  AR++IP G+FLI Q+ F GPC + 
Sbjct: 53  ETIFNVLQYGAKPGGKKDSTEAFMKAWVAACHWRGKARLLIPQGIFLIGQVTFQGPCNSP 112

Query: 108 EPIVVQIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQN 167
            PI+VQ+ ATLK   D+S++ S EW+ FE INGLIVTG GT DGQG  VWKYNDC  N N
Sbjct: 113 TPIIVQVAATLKAVTDISEFASPEWVTFEDINGLIVTGGGTFDGQGDVVWKYNDCRRNSN 172

Query: 168 CQKLPV------------------------------------------------------ 227
           CQ LP                                                       
Sbjct: 173 CQLLPTSIKFNSITNGNLRGINSVNAKSFHIAMNRCQNFRAFGLXITAPEDSPNTDGIHI 232

Query: 228 ------------------------------------------------------------ 287
                                                                       
Sbjct: 233 SSSNFVKVSKSIISTGDDCISIGQGSTNISINKVTCGPGHGISIGSLGKYPDEKDVMGII 292

Query: 288 -----------------------------------------------------------P 347
                                                                      P
Sbjct: 293 VKNSTLMNTDNGLRIKTWPGSPPSQASGILFQDIIMKNVKNPIIIDQLYCPSGSSCRTQP 352

Query: 348 SRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRSDC 407
           SRVRIS++H+ NI+GT+ SP+ V L+CS +FPCQN+E+ ++NL+YSG+    AL   S C
Sbjct: 353 SRVRISNIHYRNIRGTSSSPLGVNLMCSPQFPCQNVELFDINLRYSGKRRVSALT--SSC 412

Query: 408 TNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSPEP 467
           +N K G+  + +                SK  KT +  A            S    SP  
Sbjct: 413 SNVKAGFGGEETCLTN------------SKHLKTYESEAS---NSRSHACGSAHAASPPR 472

Query: 468 ALESAAGSWDFLLLPPDM-AEPPVGDPWRGLA-VFDVTDYGAIADGKTENSLAFMGAWED 527
              SA      L   P + AE P  DP    A +FDVT YGA+ DGKTEN +AF+ AW+D
Sbjct: 473 ITSSAPAPAPALAPAPALSAESPENDPAPDAAMIFDVTMYGAVGDGKTENGMAFLAAWDD 532

Query: 528 ACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTA---DVWIYFK 585
           AC + G STLL+P G+FF+  + F GPC  + SPKV I GTL AP++L A     WI F+
Sbjct: 533 ACNHPGKSTLLVPNGTFFIGPISFIGPCQNNQSPKVEIRGTLKAPSSLKAFPTPSWIMFR 592

[Close]

BLAST of Cp4.1LG08g05080 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 177.2 bits (448), Expect = 3.9e-44
Identity = 139/520 (26.73%), Postives = 211/520 (40.58%), Query Frame = 0


Query: 53  VLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVV 112
           VL   + PG   D TQ  ++ +  AC+S  P +VVIP G F + +I+ +GPC++  P+ +
Sbjct: 25  VLRLTSSPG--SDITQALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKS--PVEI 84

Query: 113 QIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLP 172
            +  T+   D  S +   +W++F++++G  + G GT DG+G+  W+ N+CH    C+KLP
Sbjct: 85  TLLGTVL-ADGNSIHGKEKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKLP 144

Query: 173 VPSR------VRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGR-PND 232
           +  R        I D+  ++ K   I+ +  K          N+   NV +      PN 
Sbjct: 145 ISIRFDFVTNAEIRDISSIDAKNFHINVIGAK----------NMTFDNVKIMAPAESPNT 204

Query: 233 KALPFRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSV 292
             +          VG  + NS              RIS                      
Sbjct: 205 DGIHL-----GRSVGVSIINS--------------RIS---------------------- 264

Query: 293 SGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLA 352
                                           GD           D  ++ DG       
Sbjct: 265 -------------------------------TGD-----------DCVSVGDGMVN---- 324

Query: 353 FMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVW 412
                                    L + +  GP                          
Sbjct: 325 ------------------------LLVKNVVCGP-------------------------- 368

Query: 413 IYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVR 472
                          G GI          VGSLGRY  E+DV GIRV NCT+++T NG+R
Sbjct: 385 ---------------GHGI---------SVGSLGRYGHEQDVSGIRVINCTLQETDNGLR 368

Query: 473 VKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNI 532
           +KTWP    ++ A+N+ F+NI++ NVSNPI+IDQ+YCP + C+ ++SS +KL+NI+ + I
Sbjct: 445 IKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRI 368

Query: 533 SGTYNSEFAVNLQCSSAMPCENVQLSYINL--TAIEPPET 564
            GT  ++ AV L CS   PCENVQ+  IN+  T  + P T
Sbjct: 505 RGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPAT 368

[Close]

BLAST of Cp4.1LG08g05080 vs. TAIR 10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 8.2e-42
Identity = 108/348 (31.03%), Postives = 152/348 (43.68%), Query Frame = 0


Query: 323 GLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFG 382
           G  VFDV  YGA  DGKT+N++AF  AW+DAC ++G   + IP G+F+L  V F+GPC  
Sbjct: 31  GRKVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKS 90

Query: 383 DLSPKVIILGTLIA---PTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETW------ 442
            +S   II GTL+A   P  +  D WI F+ + +LT++   G GILDGQG+ +W      
Sbjct: 91  RIS--FIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVS---GGGILDGQGSYSWPLNNCR 150

Query: 443 ------------------------------------------------------------ 502
                                                                       
Sbjct: 151 QTHNCRALPMNMGFQFVRFSRLTRIKSINSKMGHLNFFSVQHFDITRVNIKAPGDSPNTD 210

Query: 503 ----------------------------------------------FVGSLGRYREEKDV 556
                                                          VGSLG+++ EK V
Sbjct: 211 GIKIGSSNHMKIHHVDIATGDDCIAILSGTFNLDINKVNCGPGHGISVGSLGKFKGEKSV 270

[Close]

BLAST of Cp4.1LG08g05080 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-41
Identity = 134/511 (26.22%), Postives = 206/511 (40.31%), Query Frame = 0


Query: 53  VLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVV 112
           V + G+  G   D TQ  +K + +AC+S  P++VVIP G F + +I   GPC+   PI V
Sbjct: 24  VFTIGSSSG--SDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCK--APIEV 83

Query: 113 QIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLP 172
            +  T+K   +  Q    +W++F  I+G  + G G  DG+G+  W+ N+CH    C+KLP
Sbjct: 84  TLQGTVKADGNAIQ-GKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLP 143

Query: 173 VPSRV------RISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL-KYSGRPND 232
           +  R        I D+  ++ K   I+ +  K          N+ M+N+ +      PN 
Sbjct: 144 ISIRFDFILNSEIRDISSIDAKNFHINVLGAK----------NMTMNNIKIVAPEDSPNT 203

Query: 233 KALPF-RSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVS 292
             +   RSD      G ++ NS                                      
Sbjct: 204 DGIHLGRSD------GVKILNS-------------------------------------- 263

Query: 293 VSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSL 352
                               F+    D     VGD  + L V  VT              
Sbjct: 264 --------------------FISTGDDCIS--VGDGMKNLHVEKVT-------------- 323

Query: 353 AFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADV 412
                                            GP                         
Sbjct: 324 --------------------------------CGP------------------------- 357

Query: 413 WIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGV 472
                           G GI          VGSLGRY  E+DV GI+V NCT+++T NG+
Sbjct: 384 ----------------GHGI---------SVGSLGRYGHEQDVSGIKVINCTLQETDNGL 357

Query: 473 RVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKN 532
           R+KTWP    ++ A+++ F++I++ +VSNPI+IDQ+YCP + C+ +++S +KL NI+ KN
Sbjct: 444 RIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKN 357

Query: 533 ISGTYNSEFAVNLQCSSAMPCENVQLSYINL 556
           I GT  ++ AV L CS   PC+NV++  I++
Sbjct: 504 IRGTSGNKDAVKLLCSKGYPCQNVEIGDIDI 357

[Close]

BLAST of Cp4.1LG08g05080 vs. TAIR 10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 166.8 bits (421), Expect = 5.3e-41
Identity = 145/517 (28.05%), Postives = 206/517 (39.85%), Query Frame = 0


Query: 42  SIIHRKEV-VFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPA-RVVIPSGVFLIYQIV 101
           +I+ +  V + +V SFGA+    +D+T+ F+  W  AC+S   +  ++IP G F +  + 
Sbjct: 25  NIVDKSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLIIPRGEFSVGSLR 84

Query: 102 FAGPCRNTEPIVVQIDATLKGGDDVSQYVS-AEWILFEKINGLIVTGRGTLDGQGSKVWK 161
           F+GPC N   + V++    K   D+S+Y S   WI F  INGL +TG GT DGQG+  W 
Sbjct: 85  FSGPCTNVSNLTVRV----KASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWP 144

Query: 162 YNDCHVNQNCQKLPVPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLK 221
           +N+C  + NC+ LP       + + FV +  T                            
Sbjct: 145 FNNCTSDSNCKLLP-------TSLKFVGMNRT---------------------------- 204

Query: 222 YSGRPNDKALPFRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFY 281
                                                  +VRRIS  +           +
Sbjct: 205 ---------------------------------------VVRRISSVNSK---------F 264

Query: 282 FLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADG 341
           F +A+ V  R+F                                       T     A  
Sbjct: 265 FHIAL-VECRDFKG-------------------------------------TRLNITAPS 324

Query: 342 KTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPT 401
            + N+        D      SS +      F  + +     C        + +G   +  
Sbjct: 325 DSPNT--------DGIHIERSSNVY-----FSRSHIATGDDC--------VSIGQGNSQI 373

Query: 402 TLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIK 461
           T+T             +I    G GI          VGSLGRY  EKDV G+ V++C I 
Sbjct: 385 TIT-------------SIKCGPGHGI---------SVGSLGRYPNEKDVNGLVVKDCKIS 373

Query: 462 DTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLS 521
            T NG+R+KTW      S ATN+TF+NI+M NV+NPIIIDQ YCP   C     S V+LS
Sbjct: 445 GTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNVPSKVELS 373

Query: 522 NINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINL 556
            I  KNI GT +S  AV L CS  MPC+ V L  ++L
Sbjct: 505 EIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHL 373

[Close]

BLAST of Cp4.1LG08g05080 vs. TAIR 10
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein )

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-40
Identity = 110/348 (31.61%), Postives = 152/348 (43.68%), Query Frame = 0


Query: 326 VFDVTDYGAIADGKTENSLAFMGAWEDACAYR-GSSTLLIPEGSFFLAQVLFSGPCFGDL 385
           +FDV +YGA AD + +N+ AF  AW +AC +  G ST+ IP G F+L QV FSGPC   +
Sbjct: 31  IFDVRNYGARADSQRDNAFAFTKAWNEACQWSYGRSTVYIPSGIFYLRQVTFSGPCKSSI 90

Query: 386 SPKVIILGTLIAPT---TLTADVWIYFKSLRHLTITGNVGSGILDGQGAETW-------- 445
           +    I GTL+AP     +  + WI FK + +LT+T   G G+LDGQG+ +W        
Sbjct: 91  T--FFIRGTLLAPRNPYAINQEEWILFKYVDNLTVT---GGGLLDGQGSYSWPLNDCNKN 150

Query: 446 ------------------------------------------------------------ 505
                                                                       
Sbjct: 151 TNCRTLAMNIGFAFVKSSKINGLRSINSKMGHFNLFSVEDFNITGVTITAPGDSPNTDGI 210

Query: 506 --------------------------------------------FVGSLGRYREEKDVMG 556
                                                        VGSLGRY+EEK+V G
Sbjct: 211 KIGKSSHMQIYNVTIGTGDDCIAILDGTSNLDISDVRCGPGHGISVGSLGRYKEEKNVQG 270

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6H9K0	4.2e-43	27.81	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
P35337	3.1e-38	26.97	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P49062	1.5e-35	25.39	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
Q39766	3.6e-34	29.24	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	3.6e-34	29.24	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of Cp4.1LG08g05080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539060.1	1.96e-207	73.49	exopolygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028995.1	3.01e-204	72.09	Exopolygalacturonase-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6597551.1	3.15e-154	76.03	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022941512.1	6.25e-146	66.76	exopolygalacturonase-like [Cucurbita moschata]	[more]
XP_022972285.1	7.14e-145	66.48	exopolygalacturonase-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g05080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMM1	3.03e-146	66.76	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111446788 PE=3 SV=...	[more]
A0A6J1I855	3.46e-145	66.48	exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470865 PE=3 SV=1	[more]
A0A6J1FTU0	2.08e-130	56.04	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111446770 PE=3 SV=...	[more]
A0A6J1I470	6.80e-126	54.83	exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470806 PE=3 SV=1	[more]
A5AMR9	9.11e-122	32.69	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012014 PE=3 SV=1	[more]

BLAST of Cp4.1LG08g05080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07830.1	3.9e-44	26.73	Pectin lyase-like superfamily protein	[more]
AT1G78400.1	8.2e-42	31.03	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	2.4e-41	26.22	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	5.3e-41	28.05	Pectin lyase-like superfamily protein	[more]
AT2G33160.1	1.2e-40	31.61	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family pro...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 174..196 e-value: 4900.0 score: 2.3 coord: 447..468 e-value: 0.73 score: 18.9 coord: 478..499 e-value: 2500.0 score: 4.4 coord: 512..539 e-value: 5900.0 score: 1.7 coord: 207..245 e-value: 7000.0 score: 1.2
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 435..557 e-value: 8.2E-35 score: 120.4 coord: 175..237 e-value: 1.2E-9 score: 37.7 coord: 78..172 e-value: 2.4E-13 score: 49.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 168..228 e-value: 4.7E-10 score: 40.8
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 435..572 e-value: 1.4E-35 score: 124.7
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 322..434 e-value: 1.2E-19 score: 72.6 coord: 41..167 e-value: 7.3E-24 score: 86.4
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 316..433 coord: 435..574 coord: 36..168 coord: 167..241
None	No IPR available	PANTHER	PTHR31375:SF117	EXOPOLYGALACTURONASE-LIKE	coord: 435..574 coord: 167..241
None	No IPR available	PANTHER	PTHR31375:SF117	EXOPOLYGALACTURONASE-LIKE	coord: 316..433 coord: 36..168
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 46..158
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 323..559
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 173..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05080.1	Cp4.1LG08g05080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity