Cp4.1LG08g04610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g04610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	serine/arginine-rich SC35-like splicing factor SCL28
Location	Cp4.1LG08: 1481480 .. 1486046 (-)
RNA-Seq Expression	Cp4.1LG08g04610
Synteny	Cp4.1LG08g04610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTTTTAGAACGTAGGGTTTGGGTTTTCACTGTTTCTGCGATTTCGTTCGCGCGTATTTGTTACCAGTAACCAACCCACTATGGCCAGGTACCGGAGCCGGAGCAGAAGTTACAGTCCTCGCCGGCGTAGCAGAAGCCCCCCACGCGACCGGAAGCGGTACGACGACGACCACTCTCGAGACCGGTACCATGAAAGCAGGTCTTACAGGGACCGTCGCTCTCCTGCTTCTTCTGGATTACTCGTGCGTAATCTCCCCCTTGATGCTAGGTATTTCATGTTCTTCTTTGAACTTTCTGTGTTCTTTCCAATGTACCATTTTTTTAGTTTGTTGGAGGAATTGAATGGCTTAGCTTCCGCTTTTGGGGCTGTAGGGAATTGCGGCTTATTGTAGTAATTTTGATTAGTAGTTATATGTAGAGTGGATCAAGTAGAGCCTTTGTTGCTAGTAACTTATTGTCAAGCTTTGTGCAATCGCTCTTCACTGTGTTGTTTTCTCGTTTCTAATGTCTATCCAATCTATAAATTATGAAGAGTAATGGTTTAGTGTTTTGGTTGCACTCCATACAGGCCGGAAGATCTTAGGACCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAGAACTACTACACTGGGTATGGTCGCATTCATGTTAACTTGTGCGCAATTGGGTGTTGAAGAAACTAATTTATTTTTCCCGGTACTTCTTCTCTTAATTATCAGGTTATCGACGCTCGAAAGTAGAGTTTTGGCTACAACACTCATGAAAGAAAAATTTGAGAAAATCAAAATTATTTTTTAGATTAAGTTGCGAGATCAGAATTTCCGAGCATTGTTGGAGTTTCAAAGTTTGCCTCTACCAAAGTGAAAATTAATTAAATTGACATCACTGTGGTTTTAATAGTGGTTTTGCATTAAATTTGGGCCTGAACATTAGTAATGCTTCTCGTGTAAGATTGTGGGTTTGGATTTCTCTTGTTTTGAATTAGTGGAATTTTGTTCATGTTGTGTTCTGAAATATTTTTAGTAATGATCTATTTTGTTGTCAACATTTTTGTTTCGTGATGATATAATTTCCTTCATTGCCTATTTTTAGGGAACCCCGAGGATTTGGATTTGTGAAGTTTCGATTTTCAGAAGATGCAATTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATTGTTTTTGCTGAGGAGAACAGAAAAACTCCTCAAGAAATGCGATCGACTTCACGCTCGAGGTTCTATGACCTTCCTTCTAACTTCTATTTTGCAGTACCTTTTTGGTTTAAATATCTTCTCCTTAAAAAGGAGTTCTTAATCTTGAACTAATATATCAATTGTTTTTTTCATGCTTCTCATATATAGTGGCAGAAGCTACAGAAGGCGTTCTCCAGGAAGGTCTCCTAGACGTCGAAATCGTTGTTAGTGTTGATACATTTATCATGATTTTTTTTCTGACTTTCATTAAAAAGAAGAAATTGTATTTTGGTTAATGTTGATGTTTGATGAACATCATTGTGATGCAATATTGTAAGTACATGCTCATTTTTGTTCAATAAGCTTTTTCTATTTGACTGCAGCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTAATTGTCTCACTCATTCTATTACTGGCAACACTAATGTCATTATTGTCCTGCTGTTTCTATTGCTGCTTGATACTACCATGTTTTGAAACATTGTTTGTTCGTATCTTGATAATTAGAAAGCCGTGCATGATTTCGTTGAACCATATATTTTTGTACTAGATCTTGTCAAAACATTCTTTATGGATGAGAAACATATTATAATATTTTGAATTTTGGTGCTTGTCGTATACAAACCTCCATTGAAGCACTTGTTCATTGTTTTTATTTTCAGTCTAACCAAAAGGATTTTGTCTGTAAATTTAATGTAAGTCTAAGTTTATAGATTTTATGGTCTAATGCTTGCAGAGCTCTTCTTTGGGCTTAAGGAAAGAAAAAAACAACATACTATTTTCAGATAATTCTAAGCAATTCTTTTTTGTGTAAGTGTTCAGTTTACTGCCTCTACTTGGAGTGTTTTACCCAAATCTTTTTGTAATGCAAGATTGGAGGCCTTTTTTTTTCTTTTTATCACTGTTTTAAGCTTAGGGATTCCGCATCCCTAAGTCCTTTTGGCTGTGTTCTTCATCTTTTGATGATTATTTGATTTCCTTGTTTCCTATAAAAAAAATGTGAAATATTTTGATTAACACATCGTAATTCTATTTTCTCAACCTGATCCTCATGAATTCCATTTTGTTTTAAAGAACTACTTAAAGTTATCAATCGTGTGTCAATTCTAAGAAACACAATCCATTTCTAATGGATGAATTACTTAGTTCATATTTCATGTTGTGATGTGTGTTGTTAGTAAATCCAAGTGGTACTCTGGTATGGTTTCAGTTGCAGATTAATATTGGTGTCGTAGACCAACAATAATGGCACTTGTAATCTTCTTTTCTCCATTATGGTTATAATGTCAGCCCAATATATAAATTCTAAGCCACACTTTTAGTTTTTTGTTTTTCTACGTGCTTTAATGGTAGACTTCTTATTTCATTTGCTTGAATGTTATCATGTTTAAACAAAGTGATTAAATTTAATGTTTGATGTGGTGCACGTGGAATATTCCACTCCCTACATAGTATGCAGAGTTGCATTGCAGGATATTGTATACAATTTACTTAATTCCTTGTTTATGCAGATATTAAAGTGTAAAGGGAGACTTTAGAGAGTTGTTAATTTATAAAGTTTAACAAGAAGTATGTTAGCCTGTGTACAGAATATCTGCATATCTTCTGCCTACTTTTTAATTAGCAAGCAATTTTTAAGTTTGATATCTTCTTTTGCATATACCATCCAGTTAAGAAAGATTAGAGCTTATAGTGGCCAAAGAAAGAATTCATCTTCAAAGGAGAAAGGCCAAAGTTTTACTGGTTGTGTTATGGTGACATTGTGCAAGAAAAGATAATGTGATTTTTAGAAAGTTGGGGCAAAGAAAGCTATGAGCTTGTCAGAAGCTGATCAACCAATACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAATTGGTGCAGGTAAAAGTCATGTTTTGTTGATATGTTTTGAAAATGATGTTAATACAAACTTCTGCATGTAAAAGTATGATATAGTTTCATAAGTACCTATTCAACCTACCTCATCGGAGCCCTTGAAGACTGCTCGGACAGGCTTCCTTTCCTGTTACAGAGAGAGATGGTCATATTTTGCTGTTCTATGTCTGAATGGAAGTCTTATCTGTTCGATATGTTAATTTATTTGACTATTAATCTTTTCCCATCATTGTGGCTGATGCAGGAACCGTGGGGCAAGGGGCGAGTATTACTCTCCTGCACGATCTAGGTCAATTTCACAATCTCGTTTCCCTCATGACAAACGGGATTACAGCCAATCTCCGAGGCCAAAGGAGAATGGTCGGAGCTCTCGTGAAGTGAACATTGCATGCAGTGGGTCAAGGAGTCCAAGGGCTGTTAGCCGCAGTCCTTCTGGATCTCGTTCACGATCCTATAGGTATTTTGCCTTTCAAGTTCCTTTTACTGACTTTCTAAAAGACAAATGTCCCCAAGTTAGAATAAGTGGATCTATGCAGGGAACCATTTTGTATTGTTGCTTGCTGAAAAGTTGATTAATGCGTATCATTTGTATTGGTAGTTTCAAGTTTCAAGATTCATGTGATTATTTAAACTAAATCAATAAAGCTTTTATTACTGTTTACTTTTTCCTTGGTGATTCACGTGAAATGTCCAAGTGGATTAAGGAGGCCCTATGCTAGATATCAATAGATTTACAATATGTATGTGTGACCATAGAAGATAAAAATTGCTTGTGATGAAGTTCGGTGTATTTAAGAAGCTCGTGATATTTCCTAACAGACGTTCGTCGATTAATTCATTGAAGGGGCAGGAAGGAAATGACATGCTTTAGTTAGGAATAGCAAAGTTGTCGAGTTCGATTTGTCGTTATTGAACATTTCTCCTGGTGTCCCTAGTGTGTTGTGTTTAGCCGGTAGTCCTTTCAGCTGGTTGATTGAAGAATTTAGAAAGTTGACTAACACCCTGCAATCTTGCTTCTGCAGTCCTCGCTGATGGATGCGTTTTGGGTTTGCACGGAGCTTCCTGAAGATATGTTAGCCTGCCTTCAGTTGTGGCCCAATGAAGTATGCTATTCCATGCCATGTAGTTGCTTAAAGAATTCACTTTATTATATGCGAGTCTGGAGGGCTGGACTTGAGTTGTGGATTGAAGAACAGTGAGTGTAATAGTGGTGTTTCTCAAGCAGTCAACTTGATGTGAATGCATGCTGGTAGACTACTTCTTGACCTGTCCTTTACTAGATCTACGATTTTGGGTTCAGCTGTGGGTTTCGACTTTACTCTTGAATATGTCGAGTGGCTGTATTTGATGAAACCATAG

mRNA sequence

TGGGTTTTAGAACGTAGGGTTTGGGTTTTCACTGTTTCTGCGATTTCGTTCGCGCGTATTTGTTACCAGTAACCAACCCACTATGGCCAGGTACCGGAGCCGGAGCAGAAGTTACAGTCCTCGCCGGCGTAGCAGAAGCCCCCCACGCGACCGGAAGCGGTACGACGACGACCACTCTCGAGACCGGTACCATGAAAGCAGGTCTTACAGGGACCGTCGCTCTCCTGCTTCTTCTGGATTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGACCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAGAACTACTACACTGGTGGCAGAAGCTACAGAAGGCGTTCTCCAGGAAGGTCTCCTAGACGTCGAAATCGTTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGAACCGTGGGGCAAGGGGCGAGTATTACTCTCCTGCACGATCTAGGTCAATTTCACAATCTCGTTTCCCTCATGACAAACGGGATTACAGCCAATCTCCGAGGCCAAAGGAGAATGGTCGGAGCTCTCGTGAAGTGAACATTGCATGCAGTGGGTCAAGGAGTCCAAGGGCTGTTAGCCGCAGTCCTTCTGGATCTCGTTCACGATCCTATAGGTATTTTGCCTTTCAAGTTCCTTTTACTGACTTTCTAAAAGACAAATGTCCCCAATCCTCGCTGATGGATGCGTTTTGGGTTTGCACGGAGCTTCCTGAAGATATGTTAGCCTGCCTTCAGTTGTGGCCCAATGAAGTATGCTATTCCATGCCATGTAGTTGCTTAAAGAATTCACTTTATTATATGCGAGTCTGGAGGGCTGGACTTGAGTTGTGGATTGAAGAACAATCTACGATTTTGGGTTCAGCTGTGGGTTTCGACTTTACTCTTGAATATGTCGAGTGGCTGTATTTGATGAAACCATAG

Coding sequence (CDS)

ATGGCCAGGTACCGGAGCCGGAGCAGAAGTTACAGTCCTCGCCGGCGTAGCAGAAGCCCCCCACGCGACCGGAAGCGGTACGACGACGACCACTCTCGAGACCGGTACCATGAAAGCAGGTCTTACAGGGACCGTCGCTCTCCTGCTTCTTCTGGATTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGACCCCGTTTGAGCGATTTGGTCCTGTTAAGGATGTGTATCTGCCGAAGAACTACTACACTGGTGGCAGAAGCTACAGAAGGCGTTCTCCAGGAAGGTCTCCTAGACGTCGAAATCGTTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGAACCGTGGGGCAAGGGGCGAGTATTACTCTCCTGCACGATCTAGGTCAATTTCACAATCTCGTTTCCCTCATGACAAACGGGATTACAGCCAATCTCCGAGGCCAAAGGAGAATGGTCGGAGCTCTCGTGAAGTGAACATTGCATGCAGTGGGTCAAGGAGTCCAAGGGCTGTTAGCCGCAGTCCTTCTGGATCTCGTTCACGATCCTATAGGTATTTTGCCTTTCAAGTTCCTTTTACTGACTTTCTAAAAGACAAATGTCCCCAATCCTCGCTGATGGATGCGTTTTGGGTTTGCACGGAGCTTCCTGAAGATATGTTAGCCTGCCTTCAGTTGTGGCCCAATGAAGTATGCTATTCCATGCCATGTAGTTGCTTAAAGAATTCACTTTATTATATGCGAGTCTGGAGGGCTGGACTTGAGTTGTGGATTGAAGAACAATCTACGATTTTGGGTTCAGCTGTGGGTTTCGACTTTACTCTTGAATATGTCGAGTGGCTGTATTTGATGAAACCATAG

Protein sequence

MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPLDARPEDLRTPFERFGPVKDVYLPKNYYTGGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSGSRSRSYRYFAFQVPFTDFLKDKCPQSSLMDAFWVCTELPEDMLACLQLWPNEVCYSMPCSCLKNSLYYMRVWRAGLELWIEEQSTILGSAVGFDFTLEYVEWLYLMKP

Homology

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BLAST of Cp4.1LG08g04610 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-28
Identity = 111/247 (44.94%), Postives = 131/247 (53.04%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60
           MAR RSRSRSYSPR R RSPPR+RK YDD+  R+R     S RD  S   SGLL+RNLPL
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDNRLRER----PSSRDHESSGPSGLLIRNLPL 60

Query: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------- 120
           DARP DLR  FERFGP+KD+YLP+NYYTG                               
Sbjct: 61  DARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGR 120

Query: 121 ---------------------GRSYR----RRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                G S R    +R+  RSPRRR RS+SRS SP R +SR+  
Sbjct: 121 EIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSK 180

Query: 181 AR-GEYYSP-ARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRS 190
            R  + YSP  RSRSIS+S  P ++R+Y        N RS RE  +  +  RS R +SRS
Sbjct: 181 VREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPREERV-LTPIRS-RCLSRS 236

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BLAST of Cp4.1LG08g04610 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-11
Identity = 88/257 (34.24%), Postives = 108/257 (42.02%), Query Frame = 0


Query: 4   YRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPLDAR 63
           Y    R Y  R RS  PP  R+ Y                 RR  +   LLVRN+PLD R
Sbjct: 9   YSPPRRGYGGRGRSPPPPPPRRGYGGGGGGG---------GRRGSSHGSLLVRNIPLDCR 68

Query: 64  PEDLRTPFERFGPVKDVYLPKNYYTG-------------------GRSYRRRS-PGRSPR 123
           PE+LR PFERFGPV+DVY+P++YY+G                    RS  RRS  GR   
Sbjct: 69  PEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREIT 128

Query: 124 RRNRSYSRS-PSPARHDSRNR-----GARGEYYSPARSRSISQSRFP---------HDKR 183
               S SR  P   R  +R R     G+R   +  +RSRSIS+SR P         +  R
Sbjct: 129 VVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSR 188

Query: 184 DYSQSPR--------PKENGRSSREVNIACSGS--------------------------- 191
            YS +PR         ++   S R  +    G+                           
Sbjct: 189 SYSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKPGYEAEDRR 248

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BLAST of Cp4.1LG08g04610 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-10
Identity = 94/243 (38.68%), Postives = 106/243 (43.62%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRDRKRYDDDHS-RDRYHESRSYRDRRSPASSGLLVRNLPLDARPE 66
           R RSY+P     SPPR   R     S R RY      R R  P S  LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRY----GGRSRDLPTS--LLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTG-----------------------------GRSY--- 126
           DLR  FE+FGPVKD+YLP++YYTG                             GR     
Sbjct: 62  DLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVV 121

Query: 127 --------------RRRSPGRSPRRRN---RSYSRSPSPARHDSRNRGARGEYYSPA--- 186
                         R R  GR   RR    R YSRS SP     R+R   G+YYSP    
Sbjct: 122 FAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR 181

Query: 187 -RSRSISQSRFPHD-KRDYSQSPRPK-ENGRSSREVNIACSGSRSP---RAVSRSPSGSR 191
              RSIS     +D +R YS+SP      GRS   V    S S SP   R++SRSP  SR
Sbjct: 182 HHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVR-GKSRSLSPSPRRSISRSPRRSR 232

[Close]

BLAST of Cp4.1LG08g04610 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.2e-10
Identity = 88/241 (36.51%), Postives = 105/241 (43.57%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRDRKRYDDDHS-RDRYHESRSYRDRRSPASSGLLVRNLPLDARPE 66
           R RSY+P     SPPR   R     S R R+  SR      S   + LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTG-----------------------------GRSY--- 126
           DLR PFE+FGPVKD+YLP++YYTG                             GR     
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 ----RRRSP---------GRSPRRRNR-----SYSRSPSPARHDSRNRGARGEYYSPARS 186
                R+ P         GRS R ++R      YSRSP P R   R+R     Y SP   
Sbjct: 122 FAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYSRSP-PPRRGRRSRSRSRGYNSPPAK 181

Query: 187 RSISQSRFPHDK-----RDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSGSRSRS 192
           R  S+S  P D+     R YS+SP    +   S       S SRSPR   RS S  ++RS
Sbjct: 182 RHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPR---RSVSPRKNRS 228

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BLAST of Cp4.1LG08g04610 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 1.7e-05
Identity = 67/170 (39.41%), Postives = 85/170 (50.00%), Query Frame = 0


Query: 33  RDRY-HESRS-----YRDRRSPASSGLLVRNLPLDARPEDLRTPFERFGPVKDVY----- 92
           RDRY  ESR      + D+R    +   +    LD R  +LR    R+G   D +     
Sbjct: 47  RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR--ELRVQMARYGRPPDSHHSRRG 106

Query: 93  -LPKNYYTGGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGARGEYYSPARSRSISQ 152
             P+ Y  GG  Y RRS  RSPRRR RS SRS S +R  SR+R +R +  S  RSRS S 
Sbjct: 107 PPPRRY--GGGGYGRRS--RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRST 166

Query: 153 SRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSGSRSRS 191
           S+    +R  S+S     +   SR    + S SRSP  VS+  S SRSRS
Sbjct: 167 SKSRSARRSKSKSSSVSRSRSRSR----SRSRSRSPPPVSKRESKSRSRS 206

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BLAST of Cp4.1LG08g04610 vs. NCBI nr
Match: XP_023539925.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335 bits (858), Expect = 2.17e-112
Identity = 191/246 (77.64%), Postives = 191/246 (77.64%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60
           MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60

Query: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------- 120
           DARPEDLRTPFERFGPVKDVYLPKNYYTG                               
Sbjct: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNHTVIGGR 120

Query: 121 ------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGA 180
                                   GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGA
Sbjct: 121 EIRIVFAEENRKTPQEMRSTSRSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGA 180

Query: 181 RGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSG 191
           RGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSG
Sbjct: 181 RGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSG 240

[Close]

BLAST of Cp4.1LG08g04610 vs. NCBI nr
Match: XP_022939180.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata])

HSP 1 Score: 314 bits (805), Expect = 2.53e-104
Identity = 185/247 (74.90%), Postives = 186/247 (75.30%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDH-SRDRYHESRSYRDRRSPASSGLLVRNLP 60
           MARYRSRSRSYSPRRRSRSPPRDRKRYDDD  SRDRYHESRSYRDRRSPA SGLLVRNLP
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDDDSRDRYHESRSYRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------ 120
           LDARPEDLRTPFERFGPVKDVYLPKNYYTG                              
Sbjct: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNQTVIGG 120

Query: 121 -------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                    GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG
Sbjct: 121 REIRIVFAEENRKTPQEMRSTSCSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180

Query: 181 ARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPS 191
           ARGEYYSPARSRSISQS FPHDKRDYSQSPRPKENGRSSREVNIACSGSR PRAVSRS S
Sbjct: 181 ARGEYYSPARSRSISQSCFPHDKRDYSQSPRPKENGRSSREVNIACSGSRGPRAVSRSLS 240

[Close]

BLAST of Cp4.1LG08g04610 vs. NCBI nr
Match: KAG7028947.1 (Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312 bits (800), Expect = 1.45e-103
Identity = 184/247 (74.49%), Postives = 185/247 (74.90%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDH-SRDRYHESRSYRDRRSPASSGLLVRNLP 60
           MARYRSRSRSYSPRRRSRSPPRDRKRYDDD  SRDRYHESRSYRDRRSPA SGLLVRNLP
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDDDSRDRYHESRSYRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------ 120
           LDARPEDLRTPFERFGPVKDVYLPKNYYTG                              
Sbjct: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNQTVIGG 120

Query: 121 -------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                    GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRN G
Sbjct: 121 REIRIVFAEENRKTPQEMRSTSRSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNHG 180

Query: 181 ARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPS 191
           ARGEYYSPARSRSISQS FPHDKRDYSQSPRPKENGRSSREVNIACSGSR PRAVSRS S
Sbjct: 181 ARGEYYSPARSRSISQSCFPHDKRDYSQSPRPKENGRSSREVNIACSGSRGPRAVSRSLS 240

[Close]

BLAST of Cp4.1LG08g04610 vs. NCBI nr
Match: XP_022973749.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima])

HSP 1 Score: 308 bits (789), Expect = 6.80e-102
Identity = 181/247 (73.28%), Postives = 185/247 (74.90%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDD-DHSRDRYHESRSYRDRRSPASSGLLVRNLP 60
           M RYRSRSRSYSPRRRSRSPPR+RKRYDD D SR+RYHESRSYRDRRSPA SGLLVRNLP
Sbjct: 1   MPRYRSRSRSYSPRRRSRSPPRERKRYDDNDDSRNRYHESRSYRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------ 120
           LDARPEDLRTPFERFGPVKDVYLPKNYYTG                              
Sbjct: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNHTVIGG 120

Query: 121 -------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                    GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRN G
Sbjct: 121 REIRIVFAEENRKTPQEMRSTSRSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNHG 180

Query: 181 ARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPS 191
           ARGE+YSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIA SGSRSPR+ SRSPS
Sbjct: 181 ARGEHYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIARSGSRSPRSASRSPS 240

[Close]

BLAST of Cp4.1LG08g04610 vs. NCBI nr
Match: KAG6597486.1 (Serine/arginine-rich SC35-like splicing factor SCL28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (788), Expect = 9.65e-102
Identity = 182/247 (73.68%), Postives = 184/247 (74.49%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDH-SRDRYHESRSYRDRRSPASSGLLVRNLP 60
           MARYRSRSRSYSPRRRSRSPPRDRKRYDDD  SRDRYHESRSYRDRRSPA SGLLVRNLP
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDDDSRDRYHESRSYRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------ 120
           LDARPEDLR+ FERFGPVKDVYLPKNYYTG                              
Sbjct: 61  LDARPEDLRSSFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNQTVIGG 120

Query: 121 -------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                    GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG
Sbjct: 121 REIRIVFAEENRKTPQEMRSTSRSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180

Query: 181 ARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPS 191
           ARGEYYSPARSRSISQS FPHDKRDYS SPRPKENGRSSREVNIACSGSR PRAVSRS S
Sbjct: 181 ARGEYYSPARSRSISQSCFPHDKRDYSHSPRPKENGRSSREVNIACSGSRGPRAVSRSLS 240

[Close]

BLAST of Cp4.1LG08g04610 vs. ExPASy TrEMBL
Match: A0A6J1FLY4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=3662 GN=LOC111445171 PE=3 SV=1)

HSP 1 Score: 314 bits (805), Expect = 1.22e-104
Identity = 185/247 (74.90%), Postives = 186/247 (75.30%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDH-SRDRYHESRSYRDRRSPASSGLLVRNLP 60
           MARYRSRSRSYSPRRRSRSPPRDRKRYDDD  SRDRYHESRSYRDRRSPA SGLLVRNLP
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDDDSRDRYHESRSYRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------ 120
           LDARPEDLRTPFERFGPVKDVYLPKNYYTG                              
Sbjct: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNQTVIGG 120

Query: 121 -------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                    GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG
Sbjct: 121 REIRIVFAEENRKTPQEMRSTSCSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180

Query: 181 ARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPS 191
           ARGEYYSPARSRSISQS FPHDKRDYSQSPRPKENGRSSREVNIACSGSR PRAVSRS S
Sbjct: 181 ARGEYYSPARSRSISQSCFPHDKRDYSQSPRPKENGRSSREVNIACSGSRGPRAVSRSLS 240

[Close]

BLAST of Cp4.1LG08g04610 vs. ExPASy TrEMBL
Match: A0A6J1IFJ5 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111472320 PE=4 SV=1)

HSP 1 Score: 308 bits (789), Expect = 3.29e-102
Identity = 181/247 (73.28%), Postives = 185/247 (74.90%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDD-DHSRDRYHESRSYRDRRSPASSGLLVRNLP 60
           M RYRSRSRSYSPRRRSRSPPR+RKRYDD D SR+RYHESRSYRDRRSPA SGLLVRNLP
Sbjct: 1   MPRYRSRSRSYSPRRRSRSPPRERKRYDDNDDSRNRYHESRSYRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------ 120
           LDARPEDLRTPFERFGPVKDVYLPKNYYTG                              
Sbjct: 61  LDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDAIEAKQQLNHTVIGG 120

Query: 121 -------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                    GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRN G
Sbjct: 121 REIRIVFAEENRKTPQEMRSTSRSSGRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNHG 180

Query: 181 ARGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPS 191
           ARGE+YSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIA SGSRSPR+ SRSPS
Sbjct: 181 ARGEHYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIARSGSRSPRSASRSPS 240

[Close]

BLAST of Cp4.1LG08g04610 vs. ExPASy TrEMBL
Match: A0A6J1C7W4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3673 GN=LOC111009197 PE=3 SV=1)

HSP 1 Score: 278 bits (712), Expect = 1.48e-90
Identity = 170/246 (69.11%), Postives = 175/246 (71.14%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60
           MARYRSRSRSYSPRRRSRSPPR RKRYDDD  RDRYHESRSYRDRRSPA SGLLVRNLPL
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDD-PRDRYHESRSYRDRRSPAPSGLLVRNLPL 60

Query: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------- 120
           DARPEDLRTPFERFGPVKDVYLPKNYYTG                               
Sbjct: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGR 120

Query: 121 ------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGA 180
                                   GRSYRRRSP RSPRRR RSYSRSPSPARHDSRNRGA
Sbjct: 121 EIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGA 180

Query: 181 RGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSG 191
           R EY SPARSRSIS+SR PHD+RDYS+SP PKENGRS REV+I  S SRS RA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSG 240

[Close]

BLAST of Cp4.1LG08g04610 vs. ExPASy TrEMBL
Match: A0A5D3CXM8 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00340 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 4.12e-85
Identity = 163/247 (65.99%), Postives = 172/247 (69.64%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60
           MARYRSRSRSYSPRRRSR+PPR RKRYDDD  RDRY ESRS+RDRRSPA SGLLVRNLPL
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDD-PRDRYRESRSHRDRRSPAPSGLLVRNLPL 60

Query: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------- 120
           DARPEDLR PFERFGPVKDVYLPKNYYTG                               
Sbjct: 61  DARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGR 120

Query: 121 ------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGA 180
                                   GRSYRRRSP RSPRRR RSYSRSPSPARHDSR+RGA
Sbjct: 121 EIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGA 180

Query: 181 RGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSG 192
           R EY SPARSRSIS SR P D++DYS+SP PK+NGRS REV+ A S SRSP+  SRSPSG
Sbjct: 181 RDEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSG 240

[Close]

BLAST of Cp4.1LG08g04610 vs. ExPASy TrEMBL
Match: A0A6J1IQ05 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111479462 PE=3 SV=1)

HSP 1 Score: 264 bits (674), Expect = 8.52e-85
Identity = 163/246 (66.26%), Postives = 170/246 (69.11%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60
           MARYRSRSRSYSPRRRSR+PPR RKRYDDD  RDRY ESRS+RDRRSPA SGLLVRNLPL
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDD-PRDRYRESRSHRDRRSPAPSGLLVRNLPL 60

Query: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------- 120
           DARPEDLR PFERFGPVKDVYLPKNYYTG                               
Sbjct: 61  DARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGR 120

Query: 121 ------------------------GRSYRRRSPGRSPRRRNRSYSRSPSPARHDSRNRGA 180
                                   GRS RRRSP RSPRRR  SYSRSPSPARHDSR+RGA
Sbjct: 121 EIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGA 180

Query: 181 RGEYYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSG 191
           R EY SPARSRSIS+S  P D+RDYS+SP PKENGRS R V+IA S SRSPRA SRSPSG
Sbjct: 181 RDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSG 240

[Close]

BLAST of Cp4.1LG08g04610 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-29
Identity = 111/247 (44.94%), Postives = 131/247 (53.04%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPL 60
           MAR RSRSRSYSPR R RSPPR+RK YDD+  R+R     S RD  S   SGLL+RNLPL
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDNRLRER----PSSRDHESSGPSGLLIRNLPL 60

Query: 61  DARPEDLRTPFERFGPVKDVYLPKNYYTG------------------------------- 120
           DARP DLR  FERFGP+KD+YLP+NYYTG                               
Sbjct: 61  DARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGR 120

Query: 121 ---------------------GRSYR----RRSPGRSPRRRNRSYSRSPSPARHDSRNRG 180
                                G S R    +R+  RSPRRR RS+SRS SP R +SR+  
Sbjct: 121 EIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSK 180

Query: 181 AR-GEYYSP-ARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRS 190
            R  + YSP  RSRSIS+S  P ++R+Y        N RS RE  +  +  RS R +SRS
Sbjct: 181 VREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPREERV-LTPIRS-RCLSRS 236

[Close]

BLAST of Cp4.1LG08g04610 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-12
Identity = 88/257 (34.24%), Postives = 108/257 (42.02%), Query Frame = 0


Query: 4   YRSRSRSYSPRRRSRSPPRDRKRYDDDHSRDRYHESRSYRDRRSPASSGLLVRNLPLDAR 63
           Y    R Y  R RS  PP  R+ Y                 RR  +   LLVRN+PLD R
Sbjct: 9   YSPPRRGYGGRGRSPPPPPPRRGYGGGGGGG---------GRRGSSHGSLLVRNIPLDCR 68

Query: 64  PEDLRTPFERFGPVKDVYLPKNYYTG-------------------GRSYRRRS-PGRSPR 123
           PE+LR PFERFGPV+DVY+P++YY+G                    RS  RRS  GR   
Sbjct: 69  PEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREIT 128

Query: 124 RRNRSYSRS-PSPARHDSRNR-----GARGEYYSPARSRSISQSRFP---------HDKR 183
               S SR  P   R  +R R     G+R   +  +RSRSIS+SR P         +  R
Sbjct: 129 VVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSR 188

Query: 184 DYSQSPR--------PKENGRSSREVNIACSGS--------------------------- 191
            YS +PR         ++   S R  +    G+                           
Sbjct: 189 SYSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKPGYEAEDRR 248

[Close]

BLAST of Cp4.1LG08g04610 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-12
Identity = 94/243 (38.68%), Postives = 106/243 (43.62%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRDRKRYDDDHS-RDRYHESRSYRDRRSPASSGLLVRNLPLDARPE 66
           R RSY+P     SPPR   R     S R RY      R R  P S  LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRY----GGRSRDLPTS--LLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTG-----------------------------GRSY--- 126
           DLR  FE+FGPVKD+YLP++YYTG                             GR     
Sbjct: 62  DLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVV 121

Query: 127 --------------RRRSPGRSPRRRN---RSYSRSPSPARHDSRNRGARGEYYSPA--- 186
                         R R  GR   RR    R YSRS SP     R+R   G+YYSP    
Sbjct: 122 FAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRR 181

Query: 187 -RSRSISQSRFPHD-KRDYSQSPRPK-ENGRSSREVNIACSGSRSP---RAVSRSPSGSR 191
              RSIS     +D +R YS+SP      GRS   V    S S SP   R++SRSP  SR
Sbjct: 182 HHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVR-GKSRSLSPSPRRSISRSPRRSR 232

[Close]

BLAST of Cp4.1LG08g04610 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-11
Identity = 88/241 (36.51%), Postives = 105/241 (43.57%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRDRKRYDDDHS-RDRYHESRSYRDRRSPASSGLLVRNLPLDARPE 66
           R RSY+P     SPPR   R     S R R+  SR      S   + LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTG-----------------------------GRSY--- 126
           DLR PFE+FGPVKD+YLP++YYTG                             GR     
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 ----RRRSP---------GRSPRRRNR-----SYSRSPSPARHDSRNRGARGEYYSPARS 186
                R+ P         GRS R ++R      YSRSP P R   R+R     Y SP   
Sbjct: 122 FAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYSRSP-PPRRGRRSRSRSRGYNSPPAK 181

Query: 187 RSISQSRFPHDK-----RDYSQSPRPKENGRSSREVNIACSGSRSPRAVSRSPSGSRSRS 192
           R  S+S  P D+     R YS+SP    +   S       S SRSPR   RS S  ++RS
Sbjct: 182 RHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPR---RSVSPRKNRS 228

[Close]

BLAST of Cp4.1LG08g04610 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 62.4 bits (150), Expect = 7.0e-10
Identity = 93/256 (36.33%), Postives = 106/256 (41.41%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRDRKRYDDDHS-RDRYHESRSYRDRRSPASSGLLVRNLPLDARPE 66
           R RSY+P     SPPR   R     S R RY      R R  P S  LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRY----GGRSRDLPTS--LLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTG------------------------------------ 126
           DLR  FE+FGPVKD+YLP++YYTG                                    
Sbjct: 62  DLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMD 121

Query: 127 -----GRSY-----------------RRRSPGRSPRRRNRS----YSRSPSPARHDSRNR 186
                GR                   R R  G   R R R+    YSRS SP     R+R
Sbjct: 122 GYLLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSR 181

Query: 187 GARGEYYSPA----RSRSISQSRFPHD-KRDYSQSPRPK-ENGRSSREVNIACSGSRSP- 191
              G+YYSP       RSIS     +D +R YS+SP      GRS   V    S S SP 
Sbjct: 182 SRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVR-GKSRSLSPS 241

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g04610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PDV2	2.5e-28	44.94	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	2.8e-11	34.24	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q9SEU4	1.1e-10	38.68	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	5.2e-10	36.51	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q3MHR5	1.7e-05	39.41	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]

BLAST of Cp4.1LG08g04610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539925.1	2.17e-112	77.64	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo...	[more]
XP_022939180.1	2.53e-104	74.90	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]	[more]
KAG7028947.1	1.45e-103	74.49	Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma sub...	[more]
XP_022973749.1	6.80e-102	73.28	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]	[more]
KAG6597486.1	9.65e-102	73.68	Serine/arginine-rich SC35-like splicing factor SCL28, partial [Cucurbita argyros...	[more]

BLAST of Cp4.1LG08g04610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLY4	1.22e-104	74.90	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=36...	[more]
A0A6J1IFJ5	3.29e-102	73.28	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1C7W4	1.48e-90	69.11	serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3...	[more]
A0A5D3CXM8	4.12e-85	65.99	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa...	[more]
A0A6J1IQ05	8.52e-85	66.26	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661...	[more]

BLAST of Cp4.1LG08g04610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18810.1	1.8e-29	44.94	SC35-like splicing factor 28	[more]
AT3G55460.1	2.0e-12	34.24	SC35-like splicing factor 30	[more]
AT1G55310.1	7.5e-12	38.68	SC35-like splicing factor 33	[more]
AT3G13570.1	3.7e-11	36.51	SC35-like splicing factor 30A	[more]
AT1G55310.3	7.0e-10	36.33	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 53..89 e-value: 7.2E-6 score: 25.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..109 e-value: 6.8E-11 score: 44.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..187
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 91..188
None	No IPR available	PANTHER	PTHR23147:SF133	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 1..82
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..82
None	No IPR available	PANTHER	PTHR23147:SF133	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 91..188
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g04610.1	Cp4.1LG08g04610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0007283	spermatogenesis
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding